genome.fa.s124.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  117  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17074444--17074945	159	3.2	157	78	4	449	19	27	29	22	1.98
17075992--17076360	158	2.3	158	79	4	366	21	24	28	26	1.99
17077057--17077193	26	5.0	26	76	16	127	26	22	21	29	1.99
17079251--17079615	158	2.3	157	78	6	387	18	26	29	24	1.98
17079588--17079640	26	2.0	26	92	0	88	24	24	20	30	1.99
17079969--17080020	26	2.0	26	88	0	77	30	28	15	25	1.96
17081137--17081186	26	1.9	26	92	8	84	24	24	22	30	1.99
17081330--17081382	26	2.0	26	85	7	72	32	26	16	24	1.97
17081025--17081417	196	2.0	196	82	4	481	22	26	28	23	1.99
17082202--17082920	366	2.0	353	79	7	752	21	25	29	23	1.99
17082702--17083690	159	6.2	158	75	8	728	19	25	30	23	1.98
17082754--17083690	488	1.9	486	82	3	1152	19	26	30	23	1.98
17083664--17083716	26	2.0	26	85	7	72	33	22	16	26	1.96
17084044--17084096	26	2.0	26	96	0	97	26	28	20	24	1.99
17085557--17085609	26	2.0	26	88	0	79	26	24	20	28	1.99
17085740--17085792	26	2.0	26	85	7	72	26	22	22	28	1.99
17086437--17086489	26	2.0	26	92	0	88	28	28	18	24	1.98
17086504--17086807	159	1.9	158	86	2	430	16	27	32	23	1.96
17086780--17086832	26	2.0	26	89	7	81	26	22	20	30	1.98
17087489--17087544	26	2.2	26	86	0	76	35	25	12	26	1.91
17087834--17087886	26	2.0	26	89	7	81	30	26	16	26	1.97
17088856--17088908	26	2.0	26	85	0	70	30	24	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17089357--17089409	26	2.0	26	85	7	72	26	24	18	30	1.98
17090720--17090771	26	2.0	26	82	14	63	25	23	21	30	1.99
17091075--17091127	26	2.0	26	85	7	72	30	22	18	28	1.98
17091581--17091634	26	2.1	26	92	0	90	14	27	18	38	1.90
17092081--17092574	159	3.1	159	74	7	410	19	27	29	24	1.98
17093114--17093161	21	2.3	21	96	0	87	20	22	41	14	1.89
17093414--17093466	26	2.0	26	89	7	81	26	24	22	26	2.00
17093258--17093625	184	2.0	182	83	4	463	20	26	29	23	1.99
17092977--17093988	520	1.9	520	91	1	1643	20	26	29	23	1.99
17093628--17093681	21	2.6	21	87	0	81	24	24	38	12	1.90
17093934--17093986	26	2.0	26	89	7	81	26	22	20	30	1.98
17094667--17094719	26	2.0	26	82	7	63	26	22	18	32	1.97
17094853--17094902	26	1.9	26	88	8	75	32	22	16	30	1.95
17095571--17095621	26	2.0	26	84	0	66	29	27	15	27	1.96
17095597--17095972	159	2.4	158	75	7	366	19	27	30	22	1.98
17096794--17096844	26	2.0	26	88	0	75	29	27	13	29	1.94
17096820--17097320	158	3.2	157	76	5	422	18	24	30	26	1.98
17096882--17097320	159	2.8	158	77	4	454	17	25	30	26	1.97
17097295--17097346	26	2.0	26	88	7	79	28	23	17	30	1.97
17097503--17097555	26	2.0	26	92	0	88	28	26	20	24	1.99
17097668--17098190	159	3.3	158	78	5	482	19	25	30	23	1.98
17098543--17098595	26	2.0	26	82	13	65	28	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17098569--17099070	158	3.2	157	73	6	415	19	27	28	24	1.99
17099044--17099096	26	2.0	26	88	0	79	28	22	16	32	1.96
17098670--17099782	514	2.2	514	82	3	1294	19	26	29	24	1.99
17099207--17099587	159	2.4	159	80	8	427	18	25	30	24	1.98
17099559--17099611	26	2.0	26	85	7	72	28	22	18	30	1.98
17100480--17100529	26	1.9	26	95	0	91	28	30	16	26	1.96
17100506--17100997	158	3.1	158	74	9	365	19	27	28	24	1.98
17100591--17101007	158	2.6	157	77	6	412	17	28	28	25	1.98
17100980--17101032	26	2.0	26	85	7	72	28	22	18	30	1.98
17108002--17108052	26	2.0	26	84	0	66	31	29	13	25	1.94
17108161--17108530	158	2.3	158	81	4	404	18	27	30	23	1.98
17108563--17109595	171	5.9	170	65	13	460	19	28	30	22	1.98
17108871--17108921	26	2.0	26	88	7	77	33	29	11	25	1.91
17108593--17109815	355	3.4	356	78	6	1472	20	27	29	22	1.99
17108274--17109977	710	2.4	710	94	0	2928	20	28	28	22	1.99
17109923--17109975	26	2.0	26	89	7	81	28	24	18	28	1.98
17110983--17111352	184	2.0	184	83	0	470	22	27	27	22	1.99
17110623--17111884	501	2.5	502	82	2	1408	21	27	28	23	1.99
17111167--17111663	159	3.1	158	74	4	446	20	27	28	22	1.99
17111638--17111698	26	2.3	28	83	8	74	22	19	24	32	1.97
17111489--17111856	184	2.0	185	85	4	494	20	26	29	24	1.99
17112015--17112064	26	1.9	26	91	0	82	26	30	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17112923--17112975	26	2.0	26	88	0	79	26	28	20	24	1.99
17113404--17113454	26	2.0	26	88	7	77	31	23	13	31	1.93
17113599--17113646	25	1.9	25	86	0	69	27	29	18	25	1.98
17113624--17114116	158	3.1	159	73	7	466	20	27	29	22	1.98
17114099--17114151	26	2.0	26	85	7	72	28	22	18	30	1.98
17115310--17115362	26	2.0	26	89	7	81	26	22	20	30	1.98
17115745--17116213	158	3.0	158	77	8	463	19	27	30	23	1.98
17116179--17116231	26	2.0	26	89	7	81	28	24	18	28	1.98
17116898--17116950	26	2.0	26	85	7	72	30	28	15	26	1.96
17116924--17117425	158	3.2	158	75	6	361	20	26	28	24	1.99
17117399--17117451	26	2.0	26	82	7	63	28	24	20	26	1.99
17117862--17117899	20	1.9	20	100	0	76	28	21	42	7	1.81
17117945--17118316	159	2.4	159	80	7	411	19	25	30	24	1.98
17116861--17119036	891	2.4	884	83	4	2652	20	26	28	23	1.99
17118746--17119046	155	1.9	156	84	4	401	19	28	29	22	1.98
17119549--17119920	159	2.3	158	80	3	408	18	26	30	23	1.98
17119895--17119947	26	2.0	26	85	7	72	30	24	16	28	1.97
17120093--17120143	26	2.0	26	96	0	93	27	25	19	27	1.99
17119791--17120145	196	1.8	197	86	4	520	20	27	28	23	1.99
17121140--17121192	26	2.0	26	92	0	88	28	24	18	28	1.98
17121647--17121698	26	2.0	25	96	3	95	26	23	21	28	1.99
17122388--17122440	26	2.0	26	85	0	70	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17122414--17123093	158	4.3	158	80	3	659	20	26	30	22	1.99
17122414--17123242	158	5.2	156	79	5	599	20	25	30	23	1.99
17123399--17123451	26	2.0	26	85	7	72	32	26	16	24	1.97
17123867--17123919	26	2.0	26	85	7	72	32	28	15	24	1.95
17124848--17124900	26	2.0	26	89	7	81	32	24	15	28	1.95
17125597--17126097	158	3.2	158	79	4	517	20	25	28	24	1.99
17125697--17126098	159	2.5	158	78	4	425	19	26	28	25	1.99
17126071--17126123	26	2.0	26	89	7	81	28	24	18	28	1.98
17127494--17127546	26	2.0	26	89	7	81	30	28	16	24	1.97
17134595--17134645	26	2.0	26	92	0	84	29	31	15	23	1.95
17135096--17135148	26	2.0	26	85	7	72	26	24	18	30	1.98
17134937--17135306	184	2.0	185	85	1	501	20	25	28	25	1.99
17136174--17136226	26	2.0	26	85	7	72	32	26	16	24	1.97
17139127--17139178	26	2.0	26	88	7	79	26	25	21	26	1.99
17140347--17140399	26	2.0	26	96	0	97	26	24	20	28	1.99
17140505--17141982	158	9.3	157	70	9	722	21	26	28	23	1.99
17140468--17142141	316	5.3	315	80	4	1778	21	27	28	23	1.99
17140474--17142141	633	2.6	631	92	1	2682	21	27	28	23	1.99
17140504--17142141	159	10.3	159	71	7	899	21	27	28	23	1.99
17143364--17143879	158	3.3	158	75	7	407	19	25	30	24	1.98
17143847--17143904	26	2.2	26	87	9	82	29	24	18	27	1.98
17143999--17144032	13	2.6	13	85	0	50	8	47	17	26	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17144424--17144732	165	1.9	166	81	3	381	20	28	29	22	1.98
17144740--17144792	26	2.0	26	85	7	72	28	24	18	28	1.98
17145549--17146042	158	3.1	157	73	9	423	20	25	29	24	1.99
17151459--17151511	26	2.0	26	82	13	65	26	24	20	28	1.99
17152154--17152206	26	2.0	26	92	7	90	26	24	20	28	1.99
17159817--17159869	26	2.0	26	92	0	88	26	26	22	24	2.00
17160306--17160358	26	2.0	26	85	7	72	28	24	18	28	1.98
17160662--17160740	26	3.0	26	92	0	131	29	20	18	31	1.97
17161055--17161107	26	2.0	26	92	0	88	35	28	15	20	1.93
17161252--17161303	26	2.0	26	88	7	79	30	28	15	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138