genome.fa.s124.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  4  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653639--653734	26	3.8	26	78	12	85	9	13	0	77	1.00
654102--654138	15	2.5	15	86	0	56	2	8	5	83	0.88
657732--657826	50	1.9	50	91	0	154	28	9	7	54	1.59
658031--658434	207	2.0	205	80	11	445	33	9	5	51	1.57
668212--668249	4	9.5	4	94	0	67	47	2	0	50	1.15
674632--674687	29	1.9	29	89	7	87	30	10	33	25	1.90
683847--683890	22	2.0	22	100	0	88	18	13	27	40	1.88
687069--687111	2	21.5	2	100	0	86	51	0	48	0	1.00
695954--696020	22	3.2	21	67	16	50	38	0	0	61	0.96
698406--698443	19	2.0	20	84	5	51	50	10	5	34	1.59
699524--699559	2	18.5	2	94	5	65	50	0	0	50	1.00
699802--699844	22	2.0	21	81	4	50	48	4	4	41	1.44
703026--703094	36	1.9	36	85	5	95	56	4	2	36	1.34
703220--703318	35	2.9	37	79	11	113	61	0	0	38	0.96
712393--712434	22	2.0	22	85	4	59	38	7	19	35	1.79
719804--719847	2	22.0	2	100	0	88	0	50	0	50	1.00
734858--734999	53	2.6	53	79	9	137	35	10	7	45	1.68
735121--735154	14	2.4	14	90	5	50	35	0	2	61	1.11
735208--735242	16	2.2	16	90	5	54	48	0	2	48	1.16
736085--736141	24	2.3	24	85	8	71	63	0	5	31	1.17
736096--736194	6	14.4	7	76	14	75	68	0	2	29	1.00
736127--736189	4	16.5	4	78	15	71	73	0	1	25	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
736110--736189	32	2.5	33	87	2	108	70	0	1	28	0.96
736132--736189	16	3.5	17	86	6	84	74	0	0	25	0.82
736397--736497	44	2.3	43	83	5	130	41	19	13	24	1.88
736450--736631	84	2.2	82	81	10	199	40	18	17	24	1.91
736524--736631	42	2.6	42	86	0	153	41	19	14	24	1.89
737996--738025	15	2.0	15	93	0	51	20	23	6	50	1.71
742442--742477	17	2.1	17	94	0	63	44	13	5	36	1.68
748126--748222	51	1.9	51	83	8	126	31	8	6	53	1.55
748331--748364	14	2.3	15	90	5	52	29	0	8	61	1.26
749254--749339	26	3.3	24	69	18	66	66	0	6	26	1.17
749305--749382	4	20.2	4	74	10	56	69	0	2	28	1.02
749274--749382	22	4.9	22	72	11	80	66	0	4	29	1.12
749257--749383	46	2.8	46	80	11	145	67	0	4	27	1.10
782331--782455	66	1.9	66	90	3	198	24	16	20	39	1.92
784393--784654	84	3.1	84	96	1	472	26	22	31	19	1.98
786786--786814	13	2.2	13	100	0	58	48	6	13	31	1.69
800232--800286	3	18.3	3	100	0	110	34	0	32	32	1.58
800526--800581	2	28.0	2	81	0	67	48	8	0	42	1.34
803224--803262	14	2.8	13	84	7	51	48	0	0	51	1.00
819787--819828	20	2.1	20	90	0	66	57	11	2	28	1.47
819946--819994	25	2.0	24	92	4	80	51	10	4	34	1.55
819978--820064	24	3.6	24	69	23	58	60	10	2	26	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
820068--820131	21	3.2	19	78	12	65	53	9	6	31	1.58
820181--820292	32	3.7	32	72	17	112	56	10	5	27	1.55
820089--820297	112	1.9	109	88	4	312	55	11	5	28	1.58
820089--820291	55	3.6	56	86	3	293	55	11	5	27	1.58
820256--820297	20	2.1	20	90	0	66	54	9	4	30	1.53
820270--820342	16	4.2	16	74	10	56	53	9	5	31	1.56
820261--820342	20	4.5	18	74	14	71	51	10	6	31	1.62
832564--832599	7	5.1	7	96	0	63	30	30	25	13	1.94
835567--835635	27	2.6	27	90	2	113	56	8	8	26	1.58
837781--837813	5	6.8	5	89	3	50	81	0	3	15	0.80
841217--841245	14	2.1	14	100	0	58	34	0	0	65	0.93
849744--849787	22	2.0	22	95	0	79	43	13	11	31	1.80
853430--853501	25	3.1	23	86	6	92	38	16	26	18	1.91
853640--853683	22	2.0	22	95	0	79	43	13	11	31	1.80
864580--864635	20	2.8	20	89	10	96	55	3	7	33	1.45
866282--866319	16	2.4	16	86	4	51	52	0	0	47	1.00
870916--870945	13	2.3	13	94	0	51	50	0	0	50	1.00
871385--871423	18	2.2	18	86	9	53	51	5	2	41	1.38
883118--883159	20	2.2	19	83	8	50	30	2	0	66	1.04
883790--883829	2	20.5	2	89	5	64	0	50	2	47	1.14
896903--896975	31	2.5	28	80	10	74	46	0	8	45	1.33
905300--905341	21	2.0	21	85	0	57	0	23	35	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
909671--909704	14	2.4	14	90	0	50	50	17	0	32	1.47
909661--909703	12	3.6	12	80	0	50	51	13	0	34	1.42
911932--911993	21	3.0	21	77	13	67	45	0	0	54	0.99
911938--912054	40	2.9	40	77	6	94	38	0	0	60	1.03
911985--912045	13	5.0	13	72	20	51	32	0	1	65	1.02
915205--915239	12	2.8	13	86	8	54	34	0	0	65	0.93
915278--915342	13	5.0	12	74	20	51	50	0	1	47	1.10
918855--918944	33	2.8	30	77	13	83	64	5	1	28	1.23
918872--918934	29	2.3	27	84	10	76	65	1	0	33	1.03
918870--918948	30	2.7	29	86	4	95	67	2	1	29	1.12
920398--920475	37	2.1	37	90	0	120	42	7	42	7	1.62
921166--921200	2	17.5	2	100	0	70	48	0	0	51	1.00
922128--922168	2	20.5	2	100	0	82	51	0	0	48	1.00
922190--922219	2	15.5	2	93	6	53	50	0	0	50	1.00
923151--923190	2	20.0	2	100	0	80	50	0	0	50	1.00
928901--929009	52	2.1	52	87	3	157	30	22	6	40	1.79
929312--929359	25	1.9	25	91	0	78	22	29	6	41	1.78
929325--929372	24	2.0	25	83	4	62	18	29	10	41	1.84
929963--930119	52	3.0	52	88	1	226	26	23	8	41	1.83
930140--930175	11	3.3	11	84	0	54	44	30	0	25	1.54
958479--958513	14	2.3	16	90	9	56	31	0	0	68	0.90
958579--958613	18	1.9	18	94	0	61	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958501--958604	56	1.9	55	82	7	131	50	0	0	48	1.07
958649--958696	12	3.9	12	81	10	53	52	0	0	47	1.00
960161--960208	24	2.0	24	100	0	96	58	4	12	25	1.52
962303--962359	17	3.2	17	81	18	64	38	1	0	59	1.08
962379--962456	23	3.2	24	82	8	88	48	0	1	50	1.09
962526--962592	24	2.7	23	84	11	80	50	2	2	43	1.32
973406--973443	19	2.0	19	100	0	76	42	26	21	10	1.85
975967--976129	82	2.0	81	87	1	236	39	16	7	36	1.77
981180--981338	82	2.0	81	84	3	212	39	18	6	35	1.77
981594--981636	21	2.0	21	95	0	77	27	18	16	37	1.92
996658--996698	12	3.4	12	90	6	57	34	0	0	65	0.93
996703--996750	22	2.0	23	84	11	62	41	14	0	43	1.45
1009789--1009813	2	12.5	2	100	0	50	52	0	0	48	1.00
1013164--1013191	2	14.0	2	100	0	56	50	0	50	0	1.00
1019777--1019870	41	2.2	42	83	7	111	26	10	4	58	1.50
1019951--1020011	24	2.5	24	81	5	59	44	8	6	40	1.60
1020275--1020319	4	11.2	4	82	17	58	75	0	2	22	0.91
1021299--1021549	43	5.8	43	81	5	263	47	17	11	24	1.80
1021299--1021549	87	2.9	86	79	5	263	47	17	11	24	1.80
1021290--1021549	130	2.0	131	85	2	353	47	17	10	23	1.79
1021784--1021846	33	1.9	33	83	0	81	38	22	12	26	1.90
1023021--1023050	8	3.8	8	90	0	51	20	10	0	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1023008--1023115	16	6.7	15	70	19	51	9	12	0	76	1.05
1023045--1023107	18	3.6	18	76	4	65	4	11	1	82	0.88
1023035--1023122	30	3.1	27	78	14	81	9	13	1	76	1.08
1025095--1025169	31	2.5	31	82	10	84	30	21	18	29	1.97
1025550--1025589	15	2.5	17	77	22	50	75	2	5	17	1.10
1027591--1027629	10	3.8	10	86	3	51	20	0	7	71	1.10
1028640--1028685	9	5.1	9	84	7	58	26	0	0	73	0.83
1028635--1028683	22	2.3	20	83	13	62	24	0	0	75	0.80
1028635--1028682	4	11.2	4	83	16	53	25	0	0	75	0.81
1029370--1029395	13	2.0	13	100	0	52	84	0	0	15	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138