genome.fa.s124.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  20  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5512698--5512740	16	2.6	17	78	10	54	41	4	2	51	1.35
5520218--5520253	17	2.1	17	94	0	63	47	11	8	33	1.69
5520514--5520563	20	2.5	21	80	9	59	66	10	0	24	1.22
5521160--5521202	23	2.0	23	81	9	54	32	2	9	55	1.44
5521856--5521949	36	2.6	36	81	8	102	43	15	2	38	1.59
5521891--5521961	36	2.0	36	88	0	106	40	16	1	40	1.58
5522483--5522541	26	2.3	26	82	8	68	37	16	5	40	1.71
5522638--5522690	25	2.2	25	87	9	76	39	3	7	49	1.49
5528122--5528175	23	2.4	22	87	9	74	74	0	18	7	1.05
5528094--5528208	31	3.8	29	76	18	94	76	1	15	6	1.06
5529864--5530095	117	2.0	117	83	7	290	34	8	6	50	1.59
5530261--5530299	21	1.9	20	84	5	51	25	7	0	66	1.18
5531619--5531652	17	2.1	17	88	5	52	5	8	8	76	1.15
5531677--5531714	19	2.1	17	90	9	58	63	0	0	36	0.95
5532153--5532292	57	2.5	56	80	5	165	45	18	12	23	1.84
5534135--5534184	19	2.6	19	84	12	66	8	2	4	86	0.78
5534135--5534187	26	2.1	25	85	3	70	7	1	3	86	0.75
5534137--5534187	18	2.8	17	82	11	57	7	1	3	86	0.77
5534137--5534189	13	4.1	13	79	13	56	7	1	5	84	0.82
5538719--5538770	23	2.3	23	80	6	61	26	0	9	63	1.25
5546051--5546094	20	2.2	20	84	8	54	47	0	0	52	1.00
5546051--5546098	21	2.4	19	77	16	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5546109--5546172	27	2.3	28	84	7	78	51	3	1	43	1.26
5546300--5546337	17	2.1	19	90	9	62	60	0	5	34	1.19
5548349--5548404	26	2.2	26	83	0	67	19	14	25	41	1.89
5559920--5560095	40	4.3	41	82	5	205	30	15	20	33	1.93
5559925--5560117	81	2.4	80	78	10	221	31	13	20	35	1.91
5560829--5560949	62	2.0	62	90	3	190	18	19	28	33	1.96
5560891--5561001	52	2.2	51	85	1	141	18	20	29	31	1.96
5560915--5561001	26	3.4	24	76	7	75	17	19	31	32	1.95
5561073--5561174	52	2.0	52	82	7	127	16	8	1	72	1.19
5561070--5561178	55	2.0	55	83	7	141	16	9	1	72	1.19
5561153--5561197	15	3.1	15	76	23	51	2	17	2	77	0.97
5564377--5564414	2	19.0	2	88	0	58	50	0	2	47	1.15
5585740--5585794	25	2.2	25	79	17	62	41	1	5	50	1.36
5588490--5588644	75	2.1	75	88	2	231	37	6	21	34	1.80
5588507--5588681	37	4.7	35	74	15	129	38	6	22	32	1.79
5588614--5588691	37	2.1	38	82	2	95	37	6	24	32	1.81
5589225--5589258	17	2.0	17	94	0	59	29	14	17	38	1.90
5589189--5589325	71	1.9	70	88	1	202	34	14	19	31	1.92
5589327--5589400	38	1.9	38	83	5	96	41	8	22	27	1.82
5589955--5589995	16	2.7	15	85	7	55	48	2	0	48	1.14
5589971--5590029	25	2.4	23	81	15	73	49	3	1	45	1.28
5593125--5593160	18	1.9	19	94	5	65	50	0	16	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5593176--5593210	13	2.7	13	90	0	52	51	0	11	37	1.38
5595031--5595096	34	1.9	34	87	0	96	33	19	16	30	1.94
5595050--5595273	70	3.2	70	79	3	238	38	15	16	29	1.89
5595079--5595272	36	5.5	35	72	9	144	38	14	17	29	1.89
5606589--5606634	18	2.4	18	83	16	58	71	10	0	17	1.13
5606604--5606645	19	2.2	19	83	8	50	73	9	0	16	1.08
5608393--5608450	26	2.3	25	85	8	73	48	1	3	46	1.29
5608463--5608522	19	3.2	18	83	7	57	55	0	0	45	0.99
5608624--5608665	17	2.7	15	82	13	57	47	2	0	50	1.14
5608831--5608910	41	2.0	41	87	5	117	47	1	1	50	1.17
5609014--5609068	24	2.3	23	81	12	67	50	0	0	49	1.00
5609153--5609234	17	4.9	17	67	15	55	46	1	1	51	1.16
5609134--5609181	25	2.0	23	84	11	62	52	0	0	47	1.00
5609924--5610021	33	2.9	34	80	5	112	28	15	19	36	1.92
5609938--5610031	33	2.8	33	80	6	102	29	14	17	38	1.89
5609991--5610244	134	1.9	134	82	6	318	25	13	21	38	1.90
5616420--5616457	19	2.0	20	84	5	51	39	7	13	39	1.73
5620164--5620493	80	4.1	80	85	3	405	23	8	24	43	1.82
5620318--5620446	40	3.2	39	68	20	104	23	8	23	44	1.80
5620844--5620910	33	2.0	33	97	0	125	25	20	16	37	1.93
5630260--5630302	22	2.0	22	86	9	61	65	16	2	16	1.38
5630421--5630467	25	1.9	25	87	12	71	76	2	12	8	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5633826--5633898	22	3.4	21	79	9	85	5	16	0	78	0.94
5633824--5633885	10	6.0	10	76	14	63	3	16	0	80	0.83
5633829--5633913	21	3.8	23	78	10	79	7	17	0	75	1.02
5633876--5633909	15	2.4	15	90	9	54	8	17	0	73	1.08
5637724--5638187	59	7.7	59	86	6	623	33	13	8	45	1.73
5637710--5638193	245	2.0	242	88	5	726	32	12	8	45	1.73
5638265--5638333	16	4.8	14	78	15	54	81	2	2	13	0.92
5638287--5638330	23	1.9	23	90	0	70	81	4	4	9	0.96
5638272--5638335	31	2.1	31	81	0	74	82	3	3	10	0.89
5638653--5638690	20	1.9	20	94	0	67	23	18	26	31	1.97
5638654--5638698	20	2.3	20	88	3	65	26	22	24	26	2.00
5638751--5638821	31	2.3	31	87	0	97	25	23	23	26	2.00
5638830--5638883	25	2.2	24	83	6	63	40	18	5	35	1.74
5639356--5639382	3	9.0	3	100	0	54	66	0	0	33	0.92
5639563--5639600	20	1.9	20	94	0	67	34	5	15	44	1.69
5639685--5639730	12	3.9	12	81	13	51	39	0	0	60	0.97
5639684--5639718	12	2.8	13	86	8	54	40	0	0	60	0.97
5640690--5640738	23	2.1	23	92	0	80	28	14	10	46	1.77
5640894--5640958	15	4.3	15	86	7	62	67	1	3	27	1.14
5640910--5640952	3	14.3	3	95	0	77	65	0	2	32	1.06
5641106--5641345	48	5.1	45	77	16	152	39	20	12	27	1.89
5641122--5641760	49	12.9	48	79	10	526	40	19	10	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5641164--5641728	99	5.6	102	76	11	433	41	20	10	27	1.85
5641162--5641718	147	3.7	148	80	8	583	41	19	10	28	1.85
5648655--5648696	16	2.6	16	79	20	52	21	2	0	76	0.90
5648751--5648784	12	2.8	12	95	4	59	32	0	0	67	0.91
5648850--5648902	23	2.3	23	87	9	72	73	1	0	24	0.93
5649480--5649526	18	2.8	16	81	15	51	8	8	6	76	1.15
5649860--5649908	24	2.0	24	88	0	71	73	0	26	0	0.83
5649860--5649906	14	3.4	14	91	5	60	72	0	27	0	0.85
5649908--5649952	3	15.3	3	95	4	83	68	0	0	31	0.89
5650197--5650272	26	2.8	27	72	14	66	39	5	1	53	1.32
5662006--5662038	2	16.5	2	100	0	66	51	0	0	48	1.00
5662392--5662452	25	2.4	25	88	0	95	40	19	1	37	1.62
5662505--5662538	8	4.4	8	88	3	52	8	8	2	79	1.03
5662888--5662913	13	2.0	13	100	0	52	46	0	0	53	1.00
5662995--5663039	17	2.6	18	89	3	65	11	4	2	82	0.91
5662986--5663039	24	2.3	24	81	9	58	11	5	1	81	0.93
5663776--5663817	15	2.8	15	78	10	50	47	7	0	45	1.30
5665976--5666100	51	2.4	51	83	2	160	46	6	12	34	1.68
5665976--5666328	53	6.6	53	73	7	185	44	6	11	37	1.67
5665973--5666314	107	3.2	107	79	5	309	44	6	11	37	1.68
5666066--5666373	107	2.9	108	80	5	306	43	7	11	37	1.67
5668906--5668952	23	2.0	23	87	0	67	46	4	0	48	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5669962--5670114	24	6.4	23	74	8	108	37	13	6	42	1.71
5670418--5670520	52	2.0	53	92	1	172	39	11	13	34	1.81
5671525--5671575	21	2.5	21	84	9	70	74	0	3	21	0.98
5674890--5675179	149	1.9	148	84	6	381	41	11	12	34	1.79
5676813--5676865	3	17.7	3	96	0	97	66	1	0	32	1.03
5677176--5677233	21	2.6	21	78	13	55	72	1	3	22	1.09
5677313--5677337	8	3.1	8	100	0	50	88	0	0	12	0.53
5683356--5683397	17	2.5	17	81	14	59	61	0	11	26	1.30
5684186--5684301	42	2.8	42	80	2	144	30	7	17	44	1.76
5684348--5684530	57	3.2	58	79	3	165	24	13	14	47	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138