genome.fa.s124.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  33  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7810087--7810133	12	3.9	12	85	0	67	0	38	10	51	1.37
7812210--7812241	11	2.8	12	90	9	57	0	12	0	87	0.54
7818768--7818827	29	2.1	29	100	0	120	41	13	15	30	1.85
7828008--7828057	16	3.2	16	75	16	52	30	4	0	66	1.10
7828025--7828057	15	2.3	15	89	5	50	30	0	0	69	0.88
7828000--7828057	30	1.9	30	83	13	75	31	5	0	63	1.16
7829012--7829098	23	3.5	24	73	21	65	43	0	0	56	0.99
7829271--7829306	17	2.1	18	89	5	56	69	2	2	25	1.15
7834365--7834535	93	1.8	93	96	0	315	45	17	6	30	1.73
7837026--7837112	36	2.4	36	80	12	92	51	0	1	47	1.08
7837938--7837982	22	2.0	23	86	8	65	46	2	2	48	1.26
7839096--7839129	7	4.9	7	96	0	50	50	0	0	50	1.00
7841552--7841584	10	3.3	10	100	0	66	9	39	0	51	1.34
7841546--7841596	20	2.5	20	75	12	59	11	31	5	50	1.62
7859290--7859383	40	2.3	40	88	0	143	44	14	19	21	1.86
7863074--7863177	52	2.0	52	84	0	136	33	6	29	29	1.83
7864095--7864175	15	5.6	15	74	21	66	12	1	34	51	1.47
7864114--7864167	27	2.0	27	89	7	83	11	0	35	53	1.36
7864118--7864175	20	2.8	19	87	12	80	10	0	34	55	1.34
7864124--7864196	28	2.5	28	80	13	76	12	0	35	52	1.39
7864124--7864175	20	2.5	22	90	9	83	9	0	34	55	1.32
7864165--7864225	25	2.4	24	86	8	77	19	0	31	49	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7864325--7864405	31	2.6	31	86	5	103	27	2	23	46	1.65
7864731--7864764	15	2.3	15	89	0	50	26	0	2	70	1.01
7866462--7866741	106	2.7	106	79	2	260	33	10	17	38	1.84
7866610--7866651	22	2.0	22	90	4	68	28	9	23	38	1.86
7866652--7866886	129	1.8	127	81	4	292	35	12	17	34	1.88
7866780--7867160	106	3.6	105	84	4	446	33	13	16	35	1.88
7866424--7867059	341	1.9	340	84	4	870	34	12	16	36	1.87
7867362--7867417	24	2.3	25	79	14	64	3	30	1	64	1.21
7867479--7867549	18	3.8	18	74	9	61	39	12	19	28	1.88
7876554--7876611	22	2.6	23	73	13	57	25	0	22	51	1.48
7876571--7876604	16	2.2	16	89	5	52	29	0	17	52	1.45
7876571--7876611	15	2.7	15	84	3	55	24	0	21	53	1.46
7876578--7876672	36	2.5	38	80	14	99	22	0	26	51	1.48
7876617--7876651	17	2.1	17	89	10	54	25	0	28	45	1.54
7876951--7876986	12	2.6	15	75	25	51	47	0	0	52	1.00
7877228--7877267	6	6.3	6	83	11	53	20	0	12	67	1.22
7877230--7877273	20	2.2	20	92	4	72	22	0	11	65	1.24
7877232--7877281	26	1.9	26	88	8	75	26	0	8	66	1.19
7877230--7877281	20	2.6	20	87	6	61	25	0	9	65	1.23
7882549--7882776	107	2.1	107	98	0	438	30	14	15	40	1.86
7887598--7887646	20	2.5	19	87	6	71	81	6	10	2	0.94
7888968--7889047	32	2.5	31	80	8	79	31	20	16	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7890079--7890130	15	3.3	15	71	23	52	75	17	3	3	1.11
7891920--7892841	372	2.5	367	80	5	1038	21	27	20	29	1.98
7893235--7893273	17	2.2	17	86	9	51	74	0	25	0	0.82
7894311--7894353	19	2.3	19	80	8	52	6	6	6	79	1.07
7895408--7895458	21	2.4	22	81	15	63	13	1	5	78	1.02
7900078--7900123	23	2.0	23	95	0	83	43	15	17	23	1.87
7901449--7901489	18	2.2	18	86	4	55	65	7	19	7	1.41
7903348--7903502	82	1.9	81	93	4	267	41	10	16	31	1.81
7904468--7904714	63	3.9	63	80	1	242	39	14	12	33	1.84
7904714--7904817	46	2.3	46	82	0	118	34	18	11	35	1.87
7905055--7905082	12	2.3	12	100	0	56	46	10	0	42	1.38
7905171--7905219	21	2.3	21	100	0	98	26	4	28	40	1.74
7910057--7910129	38	1.9	38	83	5	94	50	17	0	31	1.47
7916245--7916302	29	2.0	29	89	0	89	15	17	12	55	1.70
7916488--7916614	68	1.9	68	90	3	202	35	7	14	42	1.74
7916972--7917021	23	2.2	23	96	0	91	12	4	28	56	1.54
7917163--7917197	15	2.3	15	90	0	52	17	5	11	65	1.43
7917468--7917604	54	2.5	54	83	4	150	52	10	8	28	1.65
7917559--7917745	89	2.1	89	98	1	365	44	9	16	28	1.79
7922077--7922222	44	3.4	43	78	6	125	34	13	10	41	1.79
7922547--7922596	24	2.1	24	81	7	57	20	6	4	70	1.25
7925442--7925674	108	2.1	112	82	8	273	53	4	11	30	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7925644--7925702	22	2.6	21	79	12	55	49	1	3	45	1.28
7925756--7925796	19	2.3	17	87	8	55	60	2	0	36	1.10
7925755--7925802	18	2.7	18	78	12	55	58	4	0	37	1.18
7926057--7926117	24	2.6	24	87	5	90	49	0	0	50	1.00
7927163--7927224	3	21.7	3	71	15	51	30	3	0	66	1.08
7927163--7927227	26	2.7	25	77	18	75	30	3	0	66	1.07
7935581--7935629	22	2.2	23	92	3	82	12	4	28	55	1.55
7935770--7935804	15	2.3	15	90	0	52	17	5	11	65	1.43
7939468--7939492	11	2.3	11	100	0	50	92	0	8	0	0.40
7940599--7940744	44	3.4	43	78	10	145	34	13	11	41	1.80
7940627--7940789	44	3.7	44	77	3	114	33	12	14	39	1.84
7943959--7944193	113	2.1	110	82	7	278	53	5	10	31	1.56
7944163--7944221	22	2.6	21	79	12	55	49	1	3	45	1.28
7944276--7944316	19	2.3	17	87	8	55	60	2	0	36	1.10
7944275--7944322	18	2.7	18	78	12	55	58	4	0	37	1.18
7944343--7944406	7	8.9	7	79	14	51	78	1	3	17	0.96
7944582--7944642	24	2.6	24	87	5	90	49	0	0	50	1.00
7945441--7945466	3	8.7	3	100	0	52	65	0	0	34	0.93
7945680--7945752	5	14.8	5	75	21	57	31	4	0	64	1.12
7945687--7945759	38	2.1	33	82	12	83	27	5	0	67	1.13
7945755--7945815	10	5.7	10	72	14	50	4	18	0	77	0.95
7946787--7946834	21	2.3	22	82	17	66	77	14	4	4	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7947676--7947713	19	2.0	19	100	0	76	26	15	10	47	1.78
7953317--7953371	25	2.2	25	84	12	69	70	1	7	20	1.20
7953421--7953586	62	2.6	63	86	7	230	52	5	7	34	1.53
7954333--7954372	7	5.7	7	90	0	62	60	0	7	32	1.25
7954333--7954372	21	1.9	21	100	0	80	60	0	7	32	1.25
7963052--7963086	16	2.2	16	89	0	52	22	2	0	74	0.95
7966598--7966891	147	2.0	147	97	0	561	36	21	12	29	1.90
7979529--7979576	20	2.4	19	73	10	51	52	0	0	47	1.00
7983014--7983053	21	1.9	21	89	0	62	35	10	17	37	1.83
7984400--7984444	24	2.0	24	86	8	67	53	2	2	42	1.25
7988690--7988741	26	2.0	27	85	11	72	38	0	7	53	1.30
7988940--7989014	24	3.0	24	86	7	89	73	5	4	17	1.18
7989995--7990084	46	2.0	46	86	0	126	42	17	8	31	1.80
7990759--7991226	86	5.5	86	81	4	482	39	12	18	29	1.87
7990732--7991226	172	2.9	170	80	5	547	39	12	18	29	1.87
7991455--7992083	120	5.2	120	77	5	457	44	12	20	21	1.85
7991456--7992083	239	2.6	240	77	6	570	44	12	20	21	1.85
7992976--7993045	11	5.9	11	71	18	52	2	12	2	81	0.91
7996427--7996474	25	1.9	25	95	0	87	39	20	12	27	1.89
7996936--7996994	31	1.9	31	83	13	77	76	1	3	18	1.02
8002976--8003148	22	7.1	24	69	18	83	48	0	1	49	1.11
8003003--8003193	47	4.3	46	77	12	170	49	0	1	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8003003--8003197	21	8.9	22	72	19	99	50	0	1	47	1.14
8003066--8003145	25	3.1	26	76	18	69	47	0	1	51	1.08
8002968--8003142	80	2.2	79	79	8	194	49	0	1	49	1.11
8003067--8003218	47	3.3	45	82	6	169	48	1	1	48	1.21
8003091--8003212	62	1.9	64	83	9	162	49	2	1	46	1.25
8003182--8003280	42	2.4	42	85	10	123	43	4	0	52	1.20
8004035--8004064	6	5.0	6	100	0	60	0	33	16	50	1.46
8009232--8009645	204	2.0	205	94	1	733	21	12	16	49	1.79
8013540--8013584	21	2.2	20	84	4	54	11	11	13	64	1.50
8014357--8014412	27	2.1	27	100	0	112	44	23	21	10	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138