genome.fa.s124.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  122  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17481117--17481785	317	2.1	317	81	3	756	22	30	27	19	1.98
17481759--17481811	26	2.0	26	88	0	79	28	20	24	26	1.99
17482819--17482871	26	2.0	26	92	7	90	26	20	26	26	1.99
17483029--17483081	26	2.0	26	85	7	72	28	16	24	30	1.97
17483861--17483911	26	2.0	26	84	7	68	29	11	25	33	1.91
17483887--17484387	158	3.2	158	75	4	398	23	29	26	19	1.98
17484053--17484354	159	1.9	158	81	0	361	23	31	26	18	1.97
17484361--17484413	26	2.0	26	85	0	70	24	18	26	30	1.98
17485497--17485560	26	2.5	26	94	0	110	31	21	25	21	1.98
17486016--17486068	26	2.0	26	88	0	79	28	18	26	26	1.98
17485699--17486556	355	2.5	351	82	4	988	22	29	27	20	1.98
17486370--17486422	26	2.0	26	85	7	72	26	18	26	28	1.98
17485699--17486591	354	2.6	355	82	4	933	22	29	27	20	1.99
17486593--17487096	159	3.2	157	77	6	509	22	28	28	20	1.99
17487079--17487148	26	2.7	26	95	0	131	27	25	21	25	1.99
17487302--17487665	185	2.0	184	84	1	478	23	28	27	20	1.99
17488220--17488272	26	2.0	26	89	7	81	30	20	22	26	1.98
17488246--17488746	158	3.2	155	74	8	467	23	29	28	19	1.98
17488720--17488790	26	2.7	26	91	2	106	23	21	29	25	1.99
17495300--17495351	26	2.0	26	92	7	88	28	15	25	30	1.96
17495325--17495670	160	2.2	160	81	4	387	25	31	24	18	1.98
17495853--17495905	26	2.0	26	92	7	90	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17496331--17496386	26	2.2	26	86	0	76	28	17	23	30	1.97
17497518--17497570	26	2.0	26	85	7	72	32	20	20	26	1.98
17498019--17498071	26	2.0	26	92	7	90	26	20	26	26	1.99
17498254--17498754	158	3.2	158	76	8	480	22	29	26	21	1.99
17498728--17498780	26	2.0	26	96	0	97	24	20	28	26	1.99
17497515--17498865	709	1.9	702	83	3	1725	24	28	26	20	1.99
17498754--17499350	170	3.6	164	77	7	523	22	28	28	19	1.98
17499063--17499357	158	1.9	158	83	1	385	23	29	28	19	1.98
17499401--17499454	26	2.1	26	89	0	81	25	18	27	27	1.98
17500462--17500514	25	2.1	26	89	3	81	28	16	24	30	1.97
17501372--17501685	158	2.0	158	79	3	337	24	26	27	21	1.99
17502255--17502333	26	3.0	26	88	0	122	26	18	26	27	1.98
17503249--17503326	26	3.0	26	84	3	104	28	17	26	26	1.98
17503776--17503828	26	2.0	26	96	0	97	24	20	28	26	1.99
17503615--17504280	366	1.8	353	80	6	791	24	28	25	21	1.99
17504348--17504786	170	2.7	155	72	14	346	24	30	25	19	1.98
17504458--17504773	170	1.9	168	85	5	440	24	30	26	18	1.97
17505323--17505375	26	2.0	26	92	0	88	28	18	24	28	1.98
17506546--17506596	26	2.0	26	96	0	93	25	15	29	29	1.96
17507286--17507646	157	2.3	158	80	5	408	26	30	24	18	1.98
17508178--17508229	26	2.0	26	88	0	77	28	19	25	26	1.98
17509255--17509757	159	3.2	158	75	4	449	24	28	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17509232--17509616	158	2.4	158	78	3	425	25	29	25	19	1.98
17509731--17509783	26	2.0	26	92	0	88	24	18	28	28	1.98
17510177--17510229	26	2.0	26	85	7	72	30	18	22	28	1.98
17510202--17510652	158	2.9	156	70	9	389	25	29	25	18	1.98
17511022--17511084	21	3.0	21	95	0	108	15	41	17	25	1.89
17511822--17511873	26	2.0	26	88	7	79	28	17	25	28	1.97
17518309--17518361	26	2.0	26	89	7	81	28	18	24	28	1.98
17519124--17519155	12	2.7	12	95	0	55	3	31	31	34	1.73
17519177--17519229	26	2.0	26	85	7	72	32	20	20	26	1.98
17519680--17519733	27	2.0	26	89	3	81	25	18	22	33	1.97
17518979--17520158	514	2.3	503	81	3	1391	21	29	27	21	1.98
17519865--17520200	160	2.1	157	79	9	360	21	29	29	19	1.98
17520185--17520234	26	1.9	26	87	0	73	28	20	28	24	1.99
17520486--17520560	37	2.0	37	94	5	134	29	8	18	44	1.78
17520978--17521422	158	2.8	156	76	3	347	23	29	28	19	1.98
17521633--17521685	26	2.0	26	89	7	81	28	18	24	28	1.98
17522113--17522165	26	2.0	26	92	7	90	26	16	26	30	1.97
17522711--17523190	159	3.0	153	73	9	392	22	29	28	19	1.98
17523910--17524410	158	3.2	156	72	11	437	22	29	26	21	1.99
17524384--17524435	26	2.0	26	96	0	95	25	19	28	26	1.98
17524750--17524802	26	2.0	26	89	7	81	28	18	26	26	1.98
17525250--17525302	26	2.0	26	92	0	88	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17526471--17526523	26	2.0	26	82	7	63	26	18	26	28	1.98
17526637--17527220	158	3.7	159	79	3	599	23	30	27	18	1.97
17526637--17527242	159	3.8	156	78	5	603	24	30	27	17	1.97
17526665--17527242	316	1.8	317	84	2	786	24	29	27	17	1.98
17533413--17533465	26	2.0	26	85	7	72	30	18	22	28	1.98
17533847--17533897	26	2.0	26	92	0	84	27	15	27	29	1.96
17534227--17534278	26	2.0	26	85	7	70	28	15	25	30	1.96
17534410--17534462	26	2.0	26	85	0	70	26	18	24	30	1.98
17534766--17534818	26	2.0	26	85	0	70	28	18	24	28	1.98
17534252--17535223	355	2.7	356	80	4	997	24	28	27	20	1.99
17535135--17535186	26	2.0	26	88	7	79	28	17	25	28	1.97
17535602--17535654	26	2.0	26	92	7	90	26	20	26	26	1.99
17535785--17535837	26	2.0	26	85	0	70	28	18	24	28	1.98
17536664--17536715	26	2.0	26	88	0	77	25	19	26	28	1.98
17537033--17537085	26	2.0	26	85	7	72	32	18	22	26	1.97
17536873--17537243	185	2.0	184	85	1	492	25	29	25	19	1.99
17536874--17537612	355	2.1	350	79	5	807	24	28	25	21	1.99
17537888--17537940	26	2.0	26	96	0	97	28	20	24	26	1.99
17538052--17538453	158	2.5	156	75	6	405	23	29	26	21	1.99
17540297--17540349	26	2.0	26	85	0	70	28	18	24	28	1.98
17540663--17540715	26	2.0	26	92	7	90	30	18	22	28	1.98
17540701--17541105	157	2.6	160	77	9	368	22	31	28	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17541170--17541221	26	2.0	26	85	7	70	26	17	25	30	1.97
17549211--17549261	26	2.0	26	92	0	84	27	15	27	29	1.96
17549580--17549631	25	2.0	26	85	14	72	28	15	25	30	1.96
17550517--17550568	26	2.0	26	92	7	88	28	19	25	26	1.98
17550357--17550726	184	2.0	184	80	3	422	25	28	25	20	1.99
17550984--17551036	26	2.0	26	92	7	90	26	20	26	26	1.99
17551167--17551219	26	2.0	26	92	0	88	26	20	26	26	1.99
17551546--17551598	26	2.0	26	85	7	72	28	20	24	26	1.99
17552045--17552096	26	2.0	26	84	0	68	26	19	25	28	1.98
17552414--17552466	26	2.0	26	89	7	81	30	20	22	26	1.98
17552254--17552624	185	2.0	184	83	2	467	24	28	25	20	1.99
17553269--17553321	26	2.0	26	96	0	97	28	20	24	26	1.99
17555205--17555633	159	2.7	157	72	7	371	26	28	24	20	1.99
17555682--17555734	26	2.0	26	88	0	79	28	20	24	26	1.99
17555517--17556185	367	1.9	356	82	5	840	23	29	26	20	1.99
17556048--17556099	26	2.0	26	92	7	88	30	17	19	32	1.95
17556075--17556521	159	2.8	159	81	4	501	21	31	28	18	1.97
17557615--17557666	26	2.0	26	85	7	70	28	19	23	28	1.98
17558032--17558108	25	3.0	25	94	1	127	24	18	27	29	1.98
17558253--17558305	26	2.0	26	85	7	72	30	18	22	28	1.98
17558918--17558969	26	2.0	26	88	0	77	32	15	26	25	1.95
17558945--17559300	158	2.2	158	79	5	378	25	29	25	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17559419--17559471	26	2.0	26	88	0	79	26	18	26	28	1.98
17560900--17560951	26	2.0	26	96	0	95	25	19	28	26	1.98
17561091--17561143	26	2.0	26	92	7	90	28	20	24	26	1.99
17560738--17561401	184	3.5	184	78	8	629	24	27	26	20	1.99
17561275--17561327	26	2.0	26	96	0	97	28	20	24	26	1.99
17562025--17562453	159	2.7	157	79	4	450	24	28	27	18	1.98
17562600--17562933	170	2.0	171	82	1	411	22	30	25	21	1.98
17563039--17563091	26	2.0	26	92	7	90	30	20	22	26	1.98
17564434--17564486	26	2.0	26	89	7	81	26	18	26	28	1.98
17566152--17566204	26	2.0	26	92	7	90	26	20	26	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138