genome.fa.s124.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  85  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14485370--14485788	159	2.6	159	77	6	391	24	30	28	16	1.97
14486116--14486168	26	2.0	26	92	0	88	28	20	26	24	1.99
14486141--14486641	158	3.2	156	73	6	427	23	30	27	18	1.98
14486615--14486667	26	2.0	26	88	0	79	22	20	28	28	1.99
14486809--14486860	26	2.0	26	92	7	88	32	15	21	30	1.94
14486595--14486968	194	1.9	196	84	3	495	23	27	27	21	1.99
14486992--14487600	328	1.9	327	80	7	734	22	29	27	20	1.99
14487320--14487728	157	2.6	159	76	6	377	22	29	28	19	1.98
14487938--14488353	158	2.6	157	76	8	412	24	28	28	18	1.98
14488414--14488464	26	2.0	26	92	0	84	27	17	25	29	1.98
14492394--14492776	158	2.4	158	77	6	391	23	31	26	18	1.97
14492394--14492810	159	2.6	159	75	7	384	24	30	27	17	1.97
14492869--14492921	26	2.0	26	89	7	81	30	18	24	26	1.98
14493593--14493645	26	2.0	26	92	7	90	28	20	22	28	1.99
14493618--14494079	158	2.9	157	75	7	414	23	29	27	19	1.98
14494093--14494145	26	2.0	26	85	0	70	26	16	26	30	1.97
14500707--14500731	13	1.9	13	100	0	50	24	16	48	12	1.79
14501014--14501066	26	2.0	26	92	7	90	28	16	24	30	1.97
14501514--14501564	26	2.0	26	92	0	84	25	13	29	31	1.94
14501890--14502273	157	2.4	158	78	6	377	23	29	26	20	1.99
14502887--14503396	159	3.2	158	76	4	497	23	28	27	20	1.99
14503369--14503419	26	2.0	26	88	7	77	27	15	29	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14504544--14505083	286	1.9	286	80	3	638	22	30	26	20	1.98
14505057--14505135	26	3.0	25	87	3	113	25	17	27	29	1.98
14505821--14505881	26	2.4	26	78	8	72	34	19	19	26	1.96
14505854--14506356	158	3.2	158	76	5	442	23	29	27	19	1.98
14506330--14506382	26	2.0	26	92	0	88	24	22	26	26	2.00
14507121--14507173	26	2.0	26	92	0	88	24	18	28	28	1.98
14507464--14507516	26	2.0	26	92	0	88	24	16	26	32	1.97
14507843--14507894	26	2.0	26	88	7	79	30	17	17	34	1.93
14507870--14508370	159	3.2	157	80	4	483	21	30	28	19	1.98
14508344--14508396	26	2.0	26	92	0	88	24	18	28	28	1.98
14508724--14508776	26	2.0	26	89	7	81	28	18	24	28	1.98
14507278--14509244	880	2.2	878	83	3	2412	22	29	27	20	1.99
14510254--14510306	26	2.0	26	85	0	70	26	16	28	28	1.97
14510575--14510616	12	3.5	12	93	0	75	2	35	28	33	1.70
14510677--14511170	159	3.1	159	76	4	505	21	30	28	19	1.98
14511144--14511196	26	2.0	26	92	0	88	26	16	28	28	1.97
14511471--14511500	12	2.5	12	94	0	51	3	33	30	33	1.74
14511524--14511575	26	2.0	26	88	7	79	26	19	26	26	1.99
14511550--14512050	158	3.2	156	75	7	447	22	30	27	19	1.98
14512200--14512252	26	2.0	26	89	7	81	28	18	26	26	1.98
14512712--14512764	26	2.0	26	85	7	72	26	15	28	30	1.96
14513847--14513897	26	2.0	26	92	0	84	31	19	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14514038--14514460	158	2.7	158	83	1	490	25	30	26	16	1.97
14515023--14515583	171	3.4	172	80	6	532	22	29	27	20	1.98
14515298--14515734	158	2.8	157	80	3	448	25	28	25	20	1.99
14515811--14516271	159	2.9	157	76	7	439	23	29	26	19	1.98
14516402--14516692	158	1.8	158	78	5	329	25	28	25	20	1.99
14516915--14516967	26	2.0	26	89	7	81	28	18	24	28	1.98
14516940--14517515	317	1.8	316	79	2	681	24	28	26	20	1.99
14518110--14518162	26	2.0	26	89	7	81	28	18	24	28	1.98
14519248--14519738	158	3.1	158	76	5	373	21	26	28	23	1.99
14519839--14519889	26	1.9	27	88	4	77	27	15	29	27	1.96
14520589--14521083	159	3.1	157	74	8	363	23	29	26	20	1.99
14521057--14521109	26	2.0	26	88	0	79	24	16	28	30	1.97
14521450--14522017	159	3.6	158	76	6	500	24	29	26	19	1.98
14522649--14522975	171	1.9	170	80	5	372	24	31	25	18	1.98
14523340--14523392	26	2.0	26	85	0	70	24	18	28	28	1.98
14524061--14524113	26	2.0	26	92	0	88	28	18	26	26	1.98
14524258--14524308	26	2.0	26	92	7	86	31	21	19	27	1.97
14524060--14524417	197	1.8	197	88	2	558	24	27	26	20	1.99
14524285--14524648	159	2.3	159	79	5	387	24	28	26	20	1.99
14525498--14525550	27	2.0	25	86	13	72	28	16	26	28	1.97
14526228--14526727	158	3.2	156	76	7	438	24	29	26	19	1.98
14527021--14527514	157	3.1	157	79	5	505	22	30	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14528216--14528268	26	2.0	26	92	7	90	28	20	24	26	1.99
14528703--14529056	197	1.8	196	80	4	435	24	26	27	21	1.99
14528926--14529365	157	2.8	156	78	4	461	22	28	29	19	1.98
14533552--14533604	26	2.0	26	89	7	81	28	18	24	28	1.98
14533736--14533788	26	2.0	26	85	7	72	24	20	26	28	1.99
14534033--14534085	26	2.0	26	100	0	106	26	20	26	26	1.99
14533581--14534145	297	1.9	297	87	2	830	23	27	29	19	1.98
14534353--14534405	26	2.0	26	88	0	79	26	22	24	26	2.00
14535073--14535125	26	2.0	26	85	7	72	30	22	20	26	1.98
14535098--14535537	159	2.8	157	77	6	415	22	30	28	18	1.98
14536296--14536347	26	2.0	26	88	7	79	28	17	25	28	1.97
14537000--14537051	26	2.0	26	85	7	70	34	15	21	28	1.94
14535711--14537110	704	2.0	702	89	1	2153	28	22	21	27	1.99
14537024--14537621	318	1.9	318	83	2	770	25	29	26	18	1.98
14537025--14537637	159	3.9	160	72	5	465	25	29	26	18	1.98
14537843--14537891	26	1.9	26	87	4	73	34	18	18	28	1.94
14538345--14538394	26	1.9	26	91	0	82	28	14	28	30	1.95
14539080--14539132	26	2.0	26	85	7	72	32	18	22	26	1.97
14539480--14539534	26	2.1	26	83	6	67	27	20	25	27	1.99
14539850--14539902	26	2.0	26	85	0	70	22	16	30	30	1.96
14540047--14540099	26	2.0	26	89	7	81	32	20	20	26	1.98
14539830--14540208	197	1.9	197	81	3	449	24	26	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14540072--14540519	159	2.8	157	73	8	406	23	28	27	20	1.99
14541270--14541698	159	2.7	158	79	4	427	23	29	28	17	1.97
14541747--14541797	26	2.0	26	85	14	70	23	17	29	29	1.97
14541431--14542350	343	2.6	350	81	6	987	23	28	27	20	1.99
14542100--14542152	26	2.0	26	86	13	74	28	13	24	33	1.93
14542773--14542829	26	2.2	26	80	3	60	21	12	7	59	1.56
14543243--14543295	26	2.0	26	85	7	72	33	20	18	26	1.96
14543268--14543613	159	2.2	159	84	3	446	23	30	26	19	1.98
14543797--14543849	26	2.0	26	89	7	81	28	18	24	28	1.98
14544294--14544343	26	1.9	26	95	0	91	26	22	30	22	1.99
14546179--14546231	26	2.0	26	85	0	70	24	15	28	32	1.95
14546375--14546427	26	2.0	26	89	7	81	28	20	22	28	1.99
14546877--14546929	26	2.0	26	92	0	88	24	18	28	28	1.98
14547233--14547285	26	2.0	26	85	0	70	30	20	22	26	1.98
14546724--14547387	356	1.9	355	83	2	866	23	27	27	21	1.99
14547083--14547444	185	2.0	185	82	4	444	23	28	26	21	1.99
14547259--14547833	158	3.6	157	76	5	408	24	29	26	19	1.99
14548376--14548426	26	2.0	26	88	7	77	31	17	21	29	1.96
14548401--14548853	158	2.9	157	73	5	412	24	30	26	18	1.98
14548878--14548928	26	2.0	26	88	7	77	27	17	27	27	1.98
14549245--14549296	26	2.0	26	88	7	79	26	19	25	28	1.98
14548699--14549584	368	2.4	367	81	3	1008	23	27	27	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14549954--14550006	26	2.0	26	92	0	88	28	18	24	28	1.98
14549616--14550536	512	1.8	501	82	4	1195	23	29	26	20	1.99
14549979--14550425	159	2.8	157	77	5	450	23	30	26	18	1.98
14550454--14550506	26	2.0	26	92	0	88	24	18	28	28	1.98
14551203--14552021	158	5.2	158	75	6	708	24	30	26	18	1.98
14551202--14552021	316	2.6	316	83	4	992	24	30	26	18	1.98
14559185--14559544	184	2.0	184	84	0	468	24	28	26	21	1.99
14559369--14559827	158	2.9	158	80	5	496	22	30	28	19	1.98
14560472--14560526	11	5.0	11	93	0	83	14	34	30	20	1.92
14560595--14560647	26	2.0	26	92	7	90	28	20	24	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138