genome.fa.s124.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  68  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13188564--13188979	159	2.6	159	78	4	437	19	27	28	24	1.98
13188467--13188963	158	3.1	157	75	4	476	20	26	29	23	1.99
13188945--13188997	26	2.0	26	89	7	81	28	22	18	30	1.98
13189664--13189716	26	2.0	26	88	0	79	28	26	20	24	1.99
13190888--13190940	26	2.0	26	96	0	97	26	28	20	24	1.99
13191386--13191438	26	2.0	26	82	7	63	28	24	20	26	1.99
13191753--13192274	158	3.3	156	76	6	509	20	25	29	25	1.99
13190863--13193270	875	2.8	875	83	6	3058	21	26	28	23	1.99
13193123--13193175	26	2.0	26	85	7	72	28	22	20	28	1.99
13193360--13193854	159	3.1	159	77	6	441	19	27	30	22	1.98
13193829--13193881	26	2.0	26	85	7	72	28	22	18	30	1.98
13194027--13194077	26	2.0	26	88	0	75	31	25	15	27	1.96
13194367--13194418	26	2.0	26	92	7	88	26	25	19	28	1.98
13195090--13195141	26	2.0	26	92	0	86	28	28	17	25	1.97
13195116--13195617	158	3.2	158	74	6	460	20	28	28	22	1.98
13195800--13195852	26	2.0	26	88	0	79	28	26	18	26	1.98
13195996--13196048	26	2.0	26	89	7	81	28	26	18	26	1.98
13196118--13196150	11	3.0	11	95	0	57	18	30	36	15	1.91
13196607--13196659	26	2.0	26	88	0	79	28	26	18	26	1.98
13196633--13197291	159	4.2	158	78	6	498	21	25	29	24	1.99
13197267--13197317	26	2.0	26	88	7	77	29	23	17	29	1.97
13198111--13198163	26	2.0	26	88	0	79	30	28	16	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13198454--13198504	26	2.0	25	96	3	93	27	23	19	29	1.98
13199782--13199839	26	2.2	27	84	12	84	31	20	20	27	1.98
13200281--13200338	26	2.2	27	84	12	84	29	24	18	27	1.98
13200995--13201046	26	2.0	26	88	7	79	25	26	19	28	1.98
13201752--13202235	159	3.1	157	74	7	435	20	25	28	25	1.99
13209353--13209405	26	2.0	26	85	7	72	26	24	18	30	1.98
13209194--13209563	184	2.0	185	85	2	503	19	25	29	25	1.98
13209720--13209772	26	2.0	26	85	7	72	32	18	16	32	1.94
13210429--13210481	26	2.0	26	85	7	72	30	26	16	26	1.97
13210455--13210946	158	3.1	158	76	5	489	20	27	29	22	1.98
13211309--13211358	26	1.9	26	91	0	82	26	26	20	28	1.99
13211332--13211833	158	3.2	156	74	7	476	19	25	30	24	1.98
13212529--13212581	26	2.0	26	85	7	72	28	26	16	28	1.97
13212555--13213056	158	3.2	156	75	8	478	19	27	30	22	1.98
13213111--13213422	171	1.8	169	82	4	394	18	26	32	22	1.97
13213396--13213447	26	2.0	26	88	7	79	26	25	21	26	1.99
13214618--13214670	26	2.0	26	92	7	90	26	22	20	30	1.98
13214685--13215782	159	6.9	159	77	3	895	20	27	29	21	1.98
13214651--13215782	318	3.6	317	83	3	1283	20	27	29	22	1.98
13216031--13216323	149	1.9	148	84	10	385	17	26	33	23	1.96
13216296--13216348	26	2.0	26	85	7	72	30	24	16	28	1.97
13217331--13217388	26	2.2	26	87	9	82	29	22	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13217483--13217522	13	3.1	13	81	0	53	7	52	22	17	1.69
13217839--13218217	165	2.3	166	78	5	364	19	27	28	25	1.99
13218225--13218277	26	2.0	26	96	0	97	28	22	20	28	1.99
13218992--13219485	158	3.1	156	73	9	437	20	25	28	25	1.99
13220326--13220747	184	2.3	185	87	1	587	21	24	28	25	1.99
13220669--13220720	26	2.0	26	85	7	70	26	26	17	28	1.97
13221733--13221783	26	2.0	26	96	0	93	27	27	19	25	1.99
13222063--13222115	26	2.0	26	92	0	88	30	22	18	28	1.98
13222269--13222321	26	2.1	26	89	3	81	26	24	20	28	1.99
13222331--13222603	145	1.9	143	82	3	341	19	27	32	20	1.97
13221604--13222616	536	1.9	536	88	2	1532	21	27	28	22	1.99
13223294--13223346	26	2.0	26	89	7	81	26	24	20	28	1.99
13223644--13223714	26	2.7	26	95	0	124	28	26	16	28	1.97
13225203--13225255	26	2.0	26	89	7	81	28	22	18	30	1.98
13225098--13225621	196	2.7	195	82	4	617	20	25	29	24	1.99
13225752--13225804	26	2.0	26	92	0	88	32	28	15	24	1.95
13225886--13226282	159	2.5	160	76	8	405	19	25	28	25	1.99
13226254--13226306	26	2.0	26	85	7	72	28	22	18	30	1.98
13226169--13226671	195	2.6	194	84	4	596	19	26	29	24	1.98
13226891--13227303	159	2.6	155	73	9	368	19	28	28	23	1.98
13227279--13227328	26	1.9	26	88	8	75	26	24	20	30	1.98
13227119--13227504	185	2.1	183	86	4	537	20	25	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13227875--13227927	26	2.0	26	88	0	79	28	26	18	26	1.98
13228373--13228424	26	2.0	26	88	7	79	25	25	19	30	1.98
13228569--13228621	26	2.0	26	96	0	97	26	28	20	24	1.99
13227870--13229122	697	1.8	695	82	4	1610	21	26	28	23	1.99
13228595--13229097	159	3.2	157	78	5	521	20	27	29	22	1.98
13229071--13229123	26	2.0	26	89	7	81	28	24	18	28	1.98
13227870--13229269	697	2.0	694	80	4	1559	21	26	28	23	1.99
13229437--13229489	26	2.0	26	92	0	88	24	26	20	28	1.99
13230108--13230160	26	2.0	26	92	7	90	26	22	20	30	1.98
13230190--13230478	159	1.8	158	87	0	425	17	27	30	24	1.97
13230451--13230503	26	2.0	26	92	7	90	26	24	20	28	1.99
13230565--13230601	14	2.6	14	95	0	65	18	37	32	10	1.86
13231188--13231240	26	2.0	26	92	0	88	26	26	20	26	1.99
13231885--13231935	26	2.0	26	88	7	77	29	23	17	29	1.97
13232581--13233311	341	2.1	342	81	2	833	20	25	29	24	1.99
13233521--13233553	12	2.8	12	95	0	57	36	21	33	9	1.85
13233839--13233891	26	2.0	26	85	0	70	28	24	20	26	1.99
13233865--13234367	159	3.2	160	77	7	472	18	26	30	24	1.98
13234339--13234391	26	2.0	26	85	7	72	28	22	18	30	1.98
13235076--13235128	26	2.0	26	92	0	88	26	22	20	30	1.98
13235230--13235611	159	2.4	163	78	8	388	19	27	29	24	1.98
13235583--13235635	26	2.0	26	89	7	81	26	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13235938--13235990	26	2.0	26	88	0	79	28	26	18	26	1.98
13235812--13236149	184	1.8	185	80	4	414	21	25	28	24	1.99
13236033--13236553	159	3.3	158	74	6	491	19	26	31	23	1.98
13236268--13236782	158	3.2	156	74	8	396	20	25	29	25	1.99
13235964--13236783	317	2.6	315	81	3	878	20	25	29	24	1.99
13236033--13236615	159	3.7	157	74	6	469	19	26	30	24	1.98
13236182--13236666	159	3.1	156	73	8	431	21	25	28	23	1.99
13236756--13236807	25	2.0	26	85	10	72	26	25	19	28	1.98
13237476--13237528	26	2.0	26	92	7	90	26	24	20	28	1.99
13242016--13242060	18	2.5	18	92	7	74	26	17	22	33	1.96
13244129--13244181	26	2.0	26	92	0	88	28	28	18	24	1.98
13244667--13244719	26	2.0	26	85	7	72	28	22	18	30	1.98
13244864--13244916	26	2.0	26	89	7	81	28	24	18	28	1.98
13244408--13245283	196	4.5	196	81	2	909	21	26	27	24	1.99
13244408--13245283	392	2.2	392	82	2	1044	21	26	27	24	1.99
13245441--13245491	26	2.0	26	88	0	75	27	25	17	29	1.98
13245939--13245991	26	2.0	26	89	7	81	26	22	20	30	1.98
13245780--13246150	184	2.0	184	81	6	439	22	25	26	25	2.00
13246797--13246849	26	2.0	26	89	7	81	28	24	18	28	1.98
13246993--13247045	26	2.0	26	88	0	79	26	28	20	24	1.99
13246638--13247204	196	3.0	185	79	9	565	20	25	29	24	1.99
13253080--13253380	158	1.9	158	79	8	344	18	29	30	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13254037--13254068	12	2.7	12	95	0	55	12	34	18	34	1.89
13254545--13254597	26	2.0	26	92	0	88	30	26	16	26	1.97
13254711--13255074	159	2.3	158	79	7	396	21	25	28	25	1.99
13254888--13255256	184	2.0	185	83	3	467	20	25	28	25	1.99
13255390--13255442	26	2.0	26	88	0	79	26	24	20	28	1.99
13254729--13255744	343	3.0	342	77	4	918	20	26	29	24	1.99
13256989--13257041	26	2.0	26	89	7	81	32	26	15	26	1.95
13257015--13257446	159	2.7	159	75	4	399	21	28	28	21	1.98
13257015--13257516	158	3.2	156	72	7	424	20	27	28	22	1.99
13257490--13257542	26	2.0	26	85	7	72	28	22	18	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138