genome.fa.s124.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  130  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18185765--18185843	15	5.1	15	75	14	72	13	7	1	77	1.05
18185772--18185858	40	2.1	41	81	6	106	13	9	2	74	1.15
18185754--18185853	5	19.6	5	69	17	55	16	7	2	75	1.12
18185708--18185858	9	16.0	9	71	21	71	18	5	3	72	1.17
18185774--18185857	21	4.1	20	78	17	66	13	8	2	76	1.11
18185870--18186086	58	3.7	58	90	6	332	45	7	11	35	1.68
18186798--18186846	25	2.0	25	83	0	62	20	16	22	40	1.91
18187821--18187880	22	2.7	22	82	5	68	35	25	10	30	1.88
18189812--18190237	50	8.6	49	75	6	239	31	11	19	38	1.86
18189810--18190237	100	4.3	99	74	6	321	31	10	19	37	1.86
18189935--18190230	150	2.0	149	81	4	344	30	10	20	38	1.86
18191117--18191270	22	7.3	21	72	14	120	44	16	7	31	1.74
18191115--18191277	66	2.6	62	81	12	181	44	15	7	32	1.74
18191627--18191671	21	2.2	21	88	4	65	57	17	4	20	1.56
18196990--18197030	14	3.0	14	82	10	50	65	0	0	34	0.93
18196992--18197034	12	3.4	12	87	6	50	62	0	0	37	0.95
18198241--18198265	1	25.0	1	100	0	50	0	0	100	0	0.00
18199276--18199411	62	2.1	63	81	11	161	34	14	13	37	1.85
18199362--18199602	62	4.0	59	78	11	227	42	12	17	27	1.85
18199393--18199631	61	3.9	59	78	11	214	42	11	18	27	1.85
18199368--18199588	121	1.8	121	83	3	293	40	12	18	29	1.86
18199535--18199649	61	1.9	61	87	0	167	42	10	20	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18215187--18215224	3	12.7	3	94	0	67	36	0	28	34	1.58
18215217--18215388	3	56.3	3	75	7	141	60	8	2	28	1.39
18218734--18218859	50	2.5	48	78	15	123	49	19	3	27	1.66
18220529--18220699	42	4.0	42	77	4	157	40	15	14	29	1.86
18220534--18220698	84	2.0	85	85	3	226	41	15	13	30	1.85
18220748--18220894	41	3.6	40	74	14	120	38	10	17	34	1.83
18221085--18221180	42	2.3	42	85	3	122	42	15	9	32	1.79
18221416--18221453	19	2.0	19	94	0	67	44	10	5	39	1.61
18223828--18223869	21	2.0	21	85	4	57	33	0	9	57	1.31
18229928--18230189	129	2.0	129	89	1	400	42	17	9	30	1.81
18245366--18245417	25	2.1	25	92	0	86	34	28	11	25	1.91
18253811--18253942	25	5.2	25	78	8	101	48	9	11	30	1.71
18253821--18253942	51	2.5	51	81	11	146	47	9	11	31	1.71
18254612--18254662	13	3.8	13	80	16	59	0	15	5	78	0.93
18254617--18254666	15	3.4	15	75	5	57	0	14	6	80	0.90
18255405--18255475	32	2.2	33	82	9	85	36	5	16	40	1.73
18260312--18260358	21	2.3	20	82	7	58	31	0	29	38	1.58
18260355--18260507	7	23.7	6	67	18	51	16	0	37	44	1.53
18260405--18260515	7	16.3	7	73	9	95	15	0	37	46	1.46
18264086--18264118	17	1.9	17	93	0	57	36	15	9	39	1.79
18269989--18270017	14	2.0	15	93	6	51	37	0	27	34	1.57
18274605--18274648	22	2.0	22	95	0	79	43	13	11	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18278091--18278125	18	1.9	18	88	0	52	37	25	14	22	1.92
18278297--18278381	23	3.6	23	91	3	125	40	18	27	14	1.89
18278529--18278572	22	2.0	22	95	0	79	43	13	11	31	1.80
18278722--18278766	22	2.0	22	91	8	74	44	8	8	37	1.67
18287298--18287708	145	2.8	144	79	5	454	41	12	13	31	1.83
18291090--18291167	39	2.0	39	87	2	111	17	8	17	55	1.68
18302613--18302650	2	19.0	2	100	0	76	50	0	0	50	1.00
18302744--18303245	255	2.0	250	92	2	844	38	17	10	32	1.85
18311474--18311531	29	2.0	30	83	16	77	15	13	5	65	1.43
18313203--18313233	12	2.6	12	94	0	53	64	32	3	0	1.09
18314432--18314463	16	2.1	16	94	5	57	25	0	0	75	0.81
18315367--18315425	28	2.1	28	87	3	93	40	20	22	16	1.91
18316554--18316944	144	2.7	143	82	5	434	42	12	13	31	1.81
18326722--18326760	20	2.0	20	89	0	60	64	7	2	25	1.33
18326832--18326885	3	17.7	3	88	11	83	66	0	1	31	1.02
18326960--18327011	19	2.6	21	84	9	72	61	1	0	36	1.07
18331760--18331841	21	3.9	21	85	0	119	18	25	25	30	1.98
18332606--18332695	33	2.8	31	80	13	103	27	1	4	66	1.18
18344851--18345049	108	1.8	108	84	2	274	19	23	13	43	1.86
18345043--18345114	36	2.0	36	86	5	101	15	22	15	47	1.82
18345054--18345127	36	2.1	36	82	5	87	20	24	12	43	1.86
18344740--18345228	251	2.0	249	81	4	572	17	23	15	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18344992--18345230	71	3.4	71	70	1	190	17	21	15	45	1.85
18345209--18345445	104	2.3	104	78	3	255	18	21	13	46	1.83
18345501--18345536	6	6.2	6	87	6	56	88	11	0	0	0.50
18345504--18345536	11	3.1	11	86	4	50	90	9	0	0	0.44
18345709--18345771	28	2.3	28	81	8	67	17	23	23	34	1.96
18347718--18347860	71	2.0	71	87	0	205	32	9	19	38	1.85
18348438--18348505	24	2.8	25	71	17	70	30	5	20	42	1.76
18354004--18354031	14	2.0	14	100	0	56	0	14	7	78	0.95
18368902--18368948	11	3.9	12	77	8	51	76	8	14	0	1.01
18375243--18375300	30	1.9	30	89	6	91	17	5	12	65	1.43
18378000--18378025	13	2.0	13	100	0	52	46	15	7	30	1.74
18390604--18390678	27	2.5	30	78	18	77	33	2	2	61	1.24
18390657--18390700	21	2.0	22	83	12	56	34	4	0	61	1.16
18391452--18391508	16	3.6	17	78	17	61	59	0	0	40	0.97
18393636--18393663	6	4.7	6	100	0	56	67	14	0	17	1.22
18393857--18393953	32	3.2	32	61	19	80	35	17	7	40	1.77
18393698--18394086	117	3.4	114	83	8	482	34	14	7	43	1.72
18393698--18394081	59	6.6	58	88	4	481	34	14	7	43	1.73
18394009--18394172	86	1.9	89	93	3	289	34	14	5	45	1.68
18394090--18394251	60	2.7	60	86	5	197	32	12	8	47	1.70
18394126--18394251	60	2.1	61	92	1	209	32	11	9	46	1.71
18393951--18394232	146	1.9	147	89	5	446	34	14	6	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18394275--18394328	17	3.2	17	82	17	69	79	1	5	12	0.98
18394293--18394332	21	1.9	21	85	10	55	80	2	5	12	0.98
18394294--18394339	16	2.9	16	80	3	58	78	2	6	13	1.04
18395344--18395430	27	3.2	26	73	20	72	66	4	2	26	1.23
18401313--18401356	21	2.1	21	95	0	79	45	6	18	29	1.75
18415430--18415514	3	28.3	3	87	7	111	67	3	0	29	1.08
18415695--18415746	19	2.6	21	84	9	72	61	1	0	36	1.07
18419500--18419596	28	3.3	28	72	16	79	34	17	13	35	1.89
18419497--18419611	60	1.9	60	83	0	149	34	16	13	34	1.88
18419865--18419897	15	2.3	15	90	10	52	0	21	0	78	0.75
18421322--18421355	12	2.8	12	86	4	50	58	23	2	14	1.50
18424802--18424852	25	1.9	28	84	11	72	31	11	3	52	1.56
18432862--18432894	6	5.5	6	100	0	66	51	0	15	33	1.43
18444538--18444599	32	1.9	32	96	0	115	30	25	4	38	1.77
18446487--18446530	13	2.9	16	87	12	58	50	0	4	45	1.22
18455159--18455216	25	2.3	25	90	0	89	18	3	17	60	1.50
18462872--18462929	25	2.3	25	90	0	89	18	3	17	60	1.50
18465633--18465752	13	9.2	12	70	17	62	47	37	1	13	1.53
18465632--18465740	19	5.6	19	76	17	98	47	38	0	12	1.48
18465629--18465801	7	26.0	7	69	18	102	45	36	2	14	1.60
18465640--18465839	19	10.5	18	69	17	59	46	36	3	14	1.60
18465747--18465823	33	2.4	33	80	2	102	42	33	3	19	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18465786--18465828	20	2.2	20	87	8	61	44	34	2	18	1.63
18465793--18465839	20	2.4	19	79	10	51	46	34	2	17	1.59
18466019--18466351	164	2.0	164	87	3	474	33	21	15	29	1.94
18469927--18469996	19	3.7	19	90	0	113	42	38	4	14	1.65
18470072--18470109	19	2.0	20	94	5	69	42	39	2	15	1.61
18472944--18473042	19	5.3	19	76	11	105	45	36	4	14	1.63
18472945--18473042	37	2.6	38	86	1	144	45	36	4	13	1.62
18473032--18473111	19	4.3	19	76	6	65	41	38	3	16	1.66
18472945--18473056	37	3.0	37	79	10	120	44	37	3	14	1.62
18473050--18473127	12	6.4	13	71	15	60	42	38	3	15	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138