genome.fa.s124.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  27  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6720060--6720125	9	7.4	9	69	20	50	34	12	18	34	1.88
6720113--6720146	17	2.0	17	88	0	50	35	11	8	44	1.72
6720287--6720359	33	2.2	34	85	2	94	49	6	6	36	1.56
6720309--6720549	17	14.1	17	71	14	122	40	9	9	40	1.70
6720185--6720558	34	11.0	34	69	9	160	43	10	9	37	1.71
6720124--6720367	101	2.4	101	82	3	260	45	11	10	33	1.74
6720307--6720557	69	3.7	67	74	8	166	41	10	9	39	1.71
6722314--6722354	16	2.6	16	84	0	55	2	12	0	85	0.70
6726120--6726154	18	1.9	18	88	11	54	60	0	0	40	0.97
6726469--6726503	14	2.7	13	91	8	54	71	11	2	14	1.25
6728716--6728749	14	2.3	15	90	5	52	79	2	8	8	1.03
6729472--6729505	16	2.2	15	89	5	50	82	2	2	11	0.89
6729985--6730173	104	1.8	105	85	5	267	37	15	6	40	1.73
6730228--6730483	108	2.4	105	80	7	282	33	14	4	46	1.66
6735242--6735267	2	13.0	2	100	0	52	50	0	0	50	1.00
6740452--6740494	22	2.0	21	82	13	52	55	4	4	34	1.41
6740493--6740536	21	2.2	20	87	4	61	61	0	0	38	0.96
6740481--6740549	29	2.5	27	83	9	77	57	0	1	40	1.07
6741979--6742013	14	2.4	14	90	4	52	40	0	5	54	1.24
6746929--6747392	39	12.0	39	88	2	666	31	35	14	18	1.91
6746992--6747353	192	1.9	192	94	0	643	31	35	13	19	1.90
6746953--6747401	231	1.9	231	94	0	799	31	36	13	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6751125--6751168	18	2.4	18	85	7	54	29	4	2	63	1.26
6753107--6753144	19	2.0	19	94	0	67	47	13	0	39	1.42
6753126--6753525	49	8.3	48	78	8	377	38	20	12	29	1.88
6753146--6753525	191	2.0	189	83	5	482	38	20	12	28	1.89
6756915--6757009	46	2.1	46	95	0	172	30	20	12	36	1.89
6760526--6761115	39	15.1	39	85	4	751	29	36	14	19	1.91
6761258--6761455	99	2.0	99	100	0	396	28	12	21	38	1.89
6767426--6767459	13	2.7	13	90	4	52	76	0	20	2	0.92
6767554--6767668	35	3.3	35	70	9	108	60	10	10	18	1.56
6768455--6768497	3	14.7	3	95	4	79	30	0	0	69	0.88
6770214--6770270	26	2.2	26	84	9	73	56	5	1	36	1.32
6774109--6774147	17	2.4	17	83	8	55	69	0	5	25	1.09
6774104--6774146	20	2.2	20	87	4	61	67	0	4	27	1.10
6774289--6774355	34	1.9	35	87	3	100	46	23	10	19	1.81
6775191--6775242	17	2.8	19	80	8	54	34	7	3	53	1.48
6777659--6777706	20	2.4	20	89	0	69	27	20	8	43	1.80
6777680--6777714	8	4.4	8	85	0	52	22	25	8	42	1.82
6780694--6780728	15	2.3	15	95	0	61	42	14	28	14	1.84
6781639--6781736	48	2.0	48	88	0	142	60	12	14	13	1.60
6783019--6783072	3	18.0	3	94	0	81	27	0	3	68	1.06
6783151--6783192	22	1.9	22	85	9	59	69	2	0	28	1.01
6784277--6784303	12	2.2	12	100	0	54	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6785246--6785291	22	2.1	22	87	0	65	43	10	8	36	1.71
6788968--6789021	23	2.4	23	96	3	101	46	16	24	12	1.82
6789168--6789213	22	2.1	22	88	8	67	45	10	8	34	1.70
6790167--6790200	15	2.3	15	94	0	59	82	8	5	2	0.93
6790167--6790204	15	2.5	15	91	0	58	81	7	7	2	0.96
6790844--6790886	17	2.6	16	82	10	50	23	0	2	74	0.93
6791295--6791368	16	4.6	16	77	9	69	51	32	0	16	1.45
6791267--6791363	32	3.0	33	75	14	94	49	31	0	18	1.48
6791267--6791363	17	5.9	16	75	12	81	49	31	0	18	1.48
6791269--6791363	49	1.9	49	85	4	129	49	32	0	17	1.47
6793452--6793480	15	1.9	15	100	0	58	41	24	0	34	1.55
6796287--6796335	20	2.5	20	100	0	98	38	4	28	28	1.75
6799064--6799095	16	2.0	16	100	0	64	43	6	12	37	1.68
6799301--6799586	33	8.7	33	78	9	273	29	19	16	34	1.94
6799276--6799586	66	4.8	66	81	7	343	28	19	16	34	1.94
6799309--6799592	131	2.2	130	86	3	383	28	20	16	34	1.94
6800115--6800437	122	2.7	122	91	0	504	32	15	16	36	1.90
6800420--6800516	19	4.7	21	85	7	96	27	29	19	22	1.98
6800420--6800494	19	3.8	19	91	5	105	26	32	20	21	1.97
6800692--6800763	23	3.1	23	97	0	135	26	20	23	29	1.99
6800499--6800717	110	2.0	111	84	6	293	23	19	17	38	1.93
6801340--6801443	17	6.4	17	83	9	119	49	34	0	15	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6801330--6801443	33	3.5	33	79	11	126	49	34	0	15	1.51
6801340--6801456	17	7.2	16	82	9	105	49	32	1	16	1.56
6806651--6807095	75	5.7	75	75	11	374	28	38	12	20	1.89
6806691--6806824	36	3.6	36	72	15	135	29	41	7	21	1.81
6806690--6806815	42	3.2	40	70	17	111	32	38	7	21	1.81
6806820--6806923	48	2.2	48	94	0	181	25	45	12	16	1.83
6806745--6807346	123	5.0	123	88	4	844	28	39	11	19	1.88
6806947--6807142	39	5.2	37	70	7	144	28	36	14	21	1.92
6807084--6807230	75	2.0	75	87	2	215	30	39	9	20	1.84
6807174--6807278	48	2.2	48	91	0	165	27	45	11	15	1.80
6811055--6811103	26	1.9	26	91	4	82	32	6	8	53	1.55
6811153--6811193	11	3.6	11	83	6	55	75	7	0	17	1.02
6811154--6811229	23	3.2	22	71	20	64	73	6	2	17	1.16
6811663--6811715	20	2.6	20	77	14	54	52	26	1	18	1.56
6811669--6811715	20	2.3	21	81	7	60	53	27	2	17	1.55
6812087--6812155	3	23.3	3	88	2	95	66	0	2	30	1.06
6812375--6812488	31	3.6	31	72	17	92	48	11	19	21	1.80
6812430--6812892	120	3.9	120	79	3	416	46	15	19	19	1.85
6813199--6813223	9	2.8	9	100	0	50	36	12	20	32	1.89
6813232--6813600	86	4.4	85	76	9	335	42	14	15	27	1.86
6814884--6814922	18	2.2	18	90	0	60	0	7	2	89	0.56
6814884--6814922	12	3.4	11	85	7	51	0	7	2	89	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6817864--6817911	25	1.9	25	83	8	62	56	4	12	27	1.54
6817885--6817964	37	2.2	36	80	6	90	60	3	13	22	1.50
6819295--6819335	21	2.0	21	85	9	57	26	29	2	41	1.69
6819354--6819403	20	2.4	21	83	3	66	52	28	0	20	1.47
6819357--6819414	20	2.8	20	78	2	62	53	31	0	15	1.42
6819776--6819869	3	32.3	3	79	10	97	63	3	1	31	1.17
6820370--6820417	21	2.2	23	88	7	73	72	12	0	14	1.11
6820370--6820419	23	2.2	23	85	7	66	74	12	0	14	1.09
6821808--6821871	32	2.0	32	100	0	128	31	18	9	40	1.83
6823402--6823468	35	1.9	35	84	0	89	53	10	16	19	1.71
6824692--6824722	7	4.4	7	100	0	62	70	0	0	29	0.87
6826810--6826864	26	2.1	27	86	3	76	25	7	21	45	1.77
6828298--6828352	12	4.7	12	78	10	60	23	27	7	41	1.80
6828307--6828353	4	12.0	4	81	4	60	25	27	4	42	1.73
6837108--6837132	10	2.5	10	100	0	50	8	0	0	92	0.40
6837220--6837266	12	3.8	12	83	13	51	72	8	2	17	1.19
6837244--6837285	12	3.4	13	90	6	61	78	4	2	14	1.01
6838095--6838134	3	13.3	3	84	10	55	65	2	0	32	1.06
6838096--6838306	5	38.6	5	79	13	127	56	7	1	34	1.35
6838095--6838289	21	8.4	24	74	17	105	57	6	1	34	1.31
6838158--6838281	31	4.3	30	77	20	113	57	6	0	35	1.30
6838200--6838289	3	32.0	3	78	16	104	63	2	0	34	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6838672--6838854	55	3.4	55	75	6	167	44	14	19	21	1.86
6838843--6838957	55	2.1	55	83	3	142	45	12	19	23	1.83
6839779--6839821	17	2.5	17	81	11	52	6	6	0	86	0.72
6840124--6840156	13	2.6	13	90	4	50	0	18	0	81	0.68
6840122--6840162	12	3.3	13	86	6	59	0	14	0	85	0.60
6844585--6844634	26	1.9	26	88	8	75	64	6	8	22	1.43
6844586--6844640	25	2.2	26	83	9	69	67	5	5	21	1.32
6845494--6845574	3	29.0	3	83	14	111	64	1	0	34	1.02
6845420--6845576	18	10.1	15	74	14	92	58	3	1	35	1.27
6846178--6846619	39	11.4	39	75	8	413	29	36	13	21	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138