genome.fa.s124.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  31  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7425262--7425322	17	3.6	17	86	2	79	26	0	31	42	1.55
7425297--7425341	24	1.9	24	86	4	65	24	0	24	51	1.49
7425299--7425377	23	3.4	23	79	8	70	18	1	26	53	1.53
7425308--7425358	24	2.1	24	82	7	59	17	0	23	58	1.38
7427642--7427672	11	2.9	11	95	4	55	32	9	19	38	1.84
7427969--7428341	48	7.8	48	72	11	176	42	14	14	28	1.85
7428082--7428362	48	5.9	47	77	13	198	41	13	16	27	1.86
7428082--7428362	96	2.9	96	75	10	295	41	13	16	27	1.86
7428061--7428377	48	6.6	50	75	11	175	41	13	15	29	1.86
7428870--7428941	7	9.6	7	72	19	56	16	15	2	65	1.39
7438346--7438382	7	5.1	7	87	6	56	10	0	2	86	0.67
7438355--7438386	8	4.1	8	96	4	57	12	0	0	87	0.54
7438346--7438382	15	2.6	14	91	4	56	10	0	2	86	0.67
7438474--7438528	25	2.2	25	83	9	67	40	5	5	49	1.49
7438600--7438646	12	3.8	13	83	8	62	72	4	0	23	1.02
7438600--7438640	21	2.0	21	85	9	57	73	2	0	24	0.96
7439361--7439408	24	2.0	24	83	4	60	37	22	4	35	1.74
7439427--7439468	8	5.1	8	81	16	50	14	0	2	83	0.75
7439425--7439464	15	2.5	16	88	8	55	15	0	2	82	0.77
7439625--7439883	44	5.9	44	79	6	265	44	20	13	22	1.86
7440495--7440621	21	6.0	21	82	3	146	40	16	7	34	1.78
7440496--7440627	43	3.1	43	82	7	169	40	15	8	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7440496--7440627	64	2.0	65	85	1	176	40	15	8	34	1.78
7441851--7442021	8	20.9	8	86	12	190	10	11	0	77	0.99
7441844--7442070	24	9.7	23	71	20	150	10	11	0	77	1.04
7441844--7442053	8	25.6	8	81	10	133	9	11	0	78	0.99
7441994--7442059	20	3.2	21	78	8	73	10	9	1	78	1.02
7443387--7443617	116	2.0	116	88	0	345	32	13	24	29	1.94
7446669--7446727	19	3.4	17	75	13	57	18	1	0	79	0.81
7446669--7446727	6	10.0	6	78	7	59	18	1	0	79	0.81
7446682--7446729	8	6.9	7	90	6	64	14	2	0	83	0.74
7446745--7446788	21	2.1	21	87	8	63	50	0	13	36	1.42
7446745--7446788	11	4.2	10	85	8	61	50	0	13	36	1.42
7446941--7446980	21	1.9	21	85	10	55	72	2	2	22	1.09
7448843--7448881	17	2.3	17	90	0	60	10	7	0	82	0.86
7448843--7448899	8	6.6	9	80	13	57	7	10	1	80	0.96
7450174--7450226	27	2.0	27	100	0	106	45	18	5	30	1.73
7450649--7450763	49	2.3	49	77	5	124	17	2	33	46	1.62
7450764--7450808	21	2.1	21	87	0	63	15	0	46	37	1.46
7452279--7452611	143	2.3	144	79	5	345	42	13	12	31	1.81
7453500--7453900	144	2.8	144	75	6	380	45	12	9	32	1.75
7454181--7454322	71	2.0	71	97	0	266	47	21	2	27	1.65
7454721--7454768	24	2.0	24	83	0	60	47	0	4	47	1.21
7460775--7460867	32	3.2	27	73	16	78	49	1	1	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7460800--7460867	29	2.4	27	85	9	84	48	1	1	48	1.19
7461112--7461137	13	2.0	13	100	0	52	69	7	0	23	1.14
7462524--7462581	10	6.1	10	68	11	50	48	0	1	50	1.11
7467114--7467138	12	2.1	12	100	0	50	16	16	24	44	1.86
7471054--7471104	24	2.2	23	89	10	77	41	0	1	56	1.10
7472050--7472112	30	2.0	32	84	6	85	31	3	1	63	1.19
7473827--7473874	21	2.3	21	82	7	62	56	2	0	41	1.11
7473839--7473881	14	3.1	14	80	6	52	53	2	0	44	1.13
7474200--7474273	29	2.6	28	77	8	71	51	2	0	45	1.15
7475013--7475058	16	2.8	16	83	3	65	34	0	4	60	1.16
7475453--7475481	5	5.8	5	100	0	58	41	0	37	20	1.53
7495390--7495439	25	2.0	24	84	3	64	46	0	2	52	1.12
7497774--7497837	20	2.9	24	79	13	66	10	4	15	68	1.35
7497796--7497938	74	1.9	75	82	12	179	20	6	15	57	1.60
7499250--7499314	12	5.2	12	75	10	58	35	6	23	35	1.80
7502019--7502116	42	2.3	41	81	10	117	18	29	5	46	1.70
7502304--7502394	42	2.2	42	88	4	130	17	28	5	48	1.69
7501864--7502432	285	2.0	284	95	0	1021	19	32	5	43	1.74
7503544--7503756	42	5.1	42	78	2	153	51	14	8	25	1.70
7504259--7504302	19	2.3	19	84	0	52	40	15	11	31	1.83
7506653--7506706	18	2.8	19	74	25	51	37	5	0	57	1.22
7507971--7508045	26	2.8	26	74	13	64	52	1	5	41	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7508012--7508055	17	2.7	16	80	13	54	50	0	0	50	1.00
7513044--7513118	28	2.8	26	76	9	71	44	0	4	52	1.20
7513173--7513212	19	2.1	19	90	0	62	52	7	0	40	1.30
7513518--7513549	17	1.9	16	93	6	55	65	9	0	25	1.22
7522039--7522069	2	15.5	2	100	0	62	48	0	0	51	1.00
7524549--7524600	24	2.2	24	86	3	70	44	3	17	34	1.67
7525156--7525185	2	15.0	2	92	0	51	46	0	3	50	1.18
7531410--7531450	19	2.2	19	100	0	82	34	36	14	14	1.87
7532743--7532767	13	1.9	13	100	0	50	84	0	8	8	0.79
7533176--7533233	9	6.8	8	77	14	53	82	3	10	3	0.90
7534685--7535068	84	4.4	86	78	9	424	27	14	19	38	1.91
7534891--7535050	49	3.6	47	81	15	164	27	13	21	37	1.91
7534685--7535068	43	8.9	42	79	11	370	27	14	19	38	1.91
7535971--7536185	20	10.4	21	72	13	133	30	5	11	52	1.59
7535975--7536186	41	5.1	41	85	1	244	31	5	11	52	1.59
7536523--7536556	14	2.4	14	90	0	50	26	8	17	47	1.77
7536579--7536612	8	4.2	8	92	0	50	23	8	23	44	1.81
7547320--7547367	6	7.7	6	84	13	62	0	4	12	83	0.79
7547292--7547367	26	2.9	25	83	13	82	0	2	17	80	0.83
7547764--7548083	33	9.8	32	71	12	188	30	11	19	38	1.88
7547594--7548137	65	8.3	65	74	7	288	30	13	18	37	1.90
7547934--7548137	64	3.2	64	81	4	185	32	12	19	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7550533--7550560	4	7.0	4	100	0	56	50	0	25	25	1.50
7554824--7554870	21	2.2	21	96	0	85	34	36	6	23	1.80
7559356--7559397	22	1.9	21	85	9	57	42	2	7	47	1.43
7559718--7559791	3	24.7	3	100	0	148	66	0	0	33	0.92
7566507--7566593	41	2.1	42	83	10	108	43	1	1	54	1.15
7568801--7568848	13	3.7	13	75	8	53	77	0	0	22	0.78
7568795--7568866	26	2.8	26	81	10	94	70	0	2	26	1.00
7568804--7568846	6	6.8	6	79	10	50	79	0	0	20	0.74
7572960--7573062	35	3.1	35	62	25	87	62	1	0	34	1.13
7572991--7573035	23	1.9	24	86	4	65	68	0	2	28	1.01
7572924--7573067	64	2.2	65	96	2	263	62	2	1	34	1.16
7574599--7574666	24	3.0	24	72	16	81	39	11	1	47	1.49
7577020--7577100	40	2.0	40	92	0	135	33	7	16	43	1.75
7577949--7578029	27	2.9	27	68	23	67	35	13	7	43	1.72
7577983--7578227	61	3.8	67	81	9	212	40	12	5	41	1.66
7578042--7578345	60	5.1	60	84	8	413	39	12	5	42	1.66
7578374--7578464	20	4.6	20	74	23	77	72	2	1	24	1.02
7578714--7578757	21	2.0	22	91	4	72	0	47	0	52	1.00
7579294--7579366	23	3.2	21	74	16	65	72	1	6	19	1.14
7579306--7579366	23	2.6	23	82	10	79	72	0	6	21	1.07
7579376--7579567	16	12.5	15	66	20	51	65	3	4	27	1.28
7579302--7579435	45	3.0	45	80	11	118	66	2	5	26	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7579591--7579653	6	10.5	6	81	14	69	77	1	1	19	0.93
7579591--7579637	15	2.8	16	84	15	60	78	0	0	21	0.75
7579589--7579644	7	8.1	7	86	11	64	76	1	0	21	0.87
7591053--7591097	24	2.0	22	86	8	63	44	0	2	53	1.13
7591039--7591168	41	3.1	39	77	21	115	47	0	1	50	1.10
7591117--7591171	21	2.7	21	78	13	60	52	0	0	47	1.00
7591040--7591171	44	3.1	42	71	22	114	47	0	1	50	1.10
7593507--7593532	5	5.2	5	100	0	52	80	0	0	19	0.71
7594318--7594362	21	2.1	21	87	0	63	31	8	17	42	1.80
7594872--7594925	25	2.2	24	83	3	63	18	1	25	53	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138