genome.fa.s124.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  87  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14625037--14625088	26	2.0	26	92	7	88	28	19	25	26	1.98
14625534--14625585	26	2.0	26	96	3	97	23	17	28	30	1.97
14625973--14626022	26	1.9	26	91	0	82	28	20	28	24	1.99
14626694--14626746	26	2.0	26	85	7	72	32	16	24	26	1.97
14626720--14627218	156	3.2	156	79	4	538	23	30	27	19	1.98
14627192--14627244	26	2.0	26	92	0	88	26	20	26	26	1.99
14628585--14628637	26	2.0	26	88	0	79	26	18	28	26	1.98
14629723--14630107	159	2.4	159	78	4	377	24	31	25	18	1.98
14630200--14630252	26	2.0	26	92	0	88	24	18	30	26	1.98
14630021--14630666	355	1.8	354	84	5	892	24	28	26	20	1.99
14630555--14630607	26	2.0	26	86	13	74	28	16	24	30	1.97
14630396--14630765	184	2.0	184	81	8	441	24	28	24	21	1.99
14630581--14631075	158	3.1	155	75	6	465	22	30	26	20	1.98
14637517--14638015	159	3.2	156	72	11	424	23	29	26	20	1.99
14637990--14638041	26	2.0	26	92	0	86	23	21	25	30	1.99
14638372--14638424	26	2.0	26	89	7	81	28	18	24	28	1.98
14638397--14638814	159	2.6	160	78	4	434	27	29	25	17	1.98
14640923--14640975	26	2.0	26	89	7	81	26	20	26	26	1.99
14640203--14641222	525	2.0	510	79	6	1097	24	28	25	20	1.99
14641656--14642245	159	3.7	159	74	8	416	25	29	26	18	1.98
14642475--14642703	112	2.0	112	97	0	431	30	24	29	14	1.95
14643425--14643477	26	2.0	26	92	0	88	24	20	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14644291--14644342	26	2.0	26	85	7	70	26	17	25	30	1.97
14645380--14645837	159	2.9	159	78	6	414	22	30	28	18	1.97
14646247--14646748	158	3.2	157	74	7	462	24	29	26	19	1.99
14646722--14646772	26	2.0	26	96	0	93	27	19	25	27	1.99
14647467--14647762	159	1.9	159	86	1	432	23	31	27	17	1.97
14648141--14648193	26	2.0	26	88	0	79	26	18	26	28	1.98
14649372--14649441	26	2.7	26	93	0	122	31	18	22	27	1.97
14649584--14649639	26	2.2	26	90	6	87	28	17	23	30	1.97
14649609--14650038	159	2.7	158	74	5	393	25	30	25	19	1.98
14649747--14650350	304	2.0	304	82	1	746	24	28	26	19	1.99
14650388--14650440	26	2.0	26	88	0	79	24	20	28	26	1.99
14650768--14650820	26	2.0	26	92	7	90	28	20	24	26	1.99
14651109--14651161	26	2.0	26	88	0	79	26	18	28	26	1.98
14650498--14651609	352	3.2	350	76	10	1046	23	29	27	19	1.98
14651291--14652482	501	2.4	502	80	4	1285	23	28	27	20	1.99
14651988--14652807	159	5.2	157	75	6	625	22	29	27	20	1.98
14652010--14652801	317	2.5	316	83	2	1005	22	29	27	19	1.98
14652781--14652833	26	2.0	26	96	0	97	30	18	22	28	1.98
14654037--14654089	26	2.0	26	85	7	72	28	20	22	28	1.99
14654016--14654615	184	3.3	182	81	4	731	25	28	24	21	1.99
14654405--14654457	26	2.0	26	85	7	72	30	20	20	28	1.98
14653821--14654615	368	2.1	374	82	5	955	25	27	24	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14656059--14656111	26	2.0	26	92	0	88	24	18	28	28	1.98
14656350--14656402	26	2.0	26	92	0	88	30	20	22	26	1.98
14657679--14657731	27	2.0	27	81	7	63	35	26	16	20	1.94
14658186--14658237	26	2.0	26	92	7	88	28	19	25	26	1.98
14658210--14658657	159	2.8	159	73	8	376	22	30	27	19	1.98
14658689--14658741	25	2.1	26	89	3	81	30	20	24	24	1.99
14660109--14660451	57	6.0	58	76	18	260	34	13	8	44	1.74
14660281--14660453	51	3.1	54	82	12	217	33	11	8	46	1.69
14660605--14660642	21	1.9	20	89	10	60	81	0	0	18	0.69
14660815--14660841	5	5.4	5	100	0	54	0	37	44	18	1.50
14661648--14661719	3	23.7	3	83	13	94	66	0	0	33	0.92
14661648--14661739	12	7.0	14	81	17	76	63	2	0	34	1.07
14661771--14661809	8	4.8	8	81	6	51	82	2	15	0	0.79
14661771--14661810	17	2.4	17	87	8	55	82	2	15	0	0.77
14661830--14661920	36	2.5	35	84	5	110	23	29	24	23	1.99
14662072--14662533	41	11.1	41	90	7	679	37	22	18	22	1.94
14662072--14662533	125	3.7	123	89	7	686	37	22	18	22	1.94
14663541--14663617	8	9.8	8	86	8	113	12	14	0	72	1.12
14663541--14663616	15	4.9	15	88	11	109	13	14	0	72	1.13
14663542--14663616	23	3.2	23	94	1	123	13	14	0	72	1.13
14669807--14669856	26	1.9	26	88	8	75	30	18	24	28	1.97
14670697--14670749	26	2.0	26	85	7	72	24	11	28	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14671075--14671127	26	2.0	26	81	0	61	30	20	26	22	1.98
14672650--14672702	26	2.0	26	92	0	88	26	16	26	30	1.97
14674274--14674326	26	2.0	26	89	7	81	28	20	22	28	1.99
14674299--14674692	153	2.5	153	76	5	405	26	29	26	18	1.98
14674740--14674819	26	3.1	26	87	0	115	26	22	27	23	2.00
14675078--14675109	12	2.7	12	95	0	55	0	28	37	34	1.57
14675156--14675552	159	2.5	157	75	7	381	27	29	24	17	1.98
14676321--14676613	159	1.8	159	79	4	340	23	28	27	19	1.99
14677060--14677360	158	1.9	158	79	1	343	21	30	28	18	1.97
14677367--14677422	26	2.2	26	83	6	69	33	17	21	26	1.96
14677550--14677602	26	2.0	26	85	7	72	32	18	20	28	1.97
14677208--14677652	183	2.4	183	80	4	502	25	26	26	21	2.00
14677917--14677969	26	2.0	26	85	7	72	32	18	20	28	1.97
14681553--14681592	17	2.4	17	91	0	62	20	7	55	17	1.66
14685537--14686038	158	3.2	158	74	9	437	22	28	28	20	1.99
14686012--14686067	26	2.2	26	86	0	76	23	21	25	30	1.99
14686105--14686133	13	2.1	14	93	6	51	34	13	34	17	1.89
14686803--14686855	26	2.0	26	85	0	70	28	18	24	28	1.98
14687235--14687287	26	2.0	26	89	7	81	32	20	20	26	1.98
14687944--14687996	26	2.0	26	92	7	90	30	15	24	30	1.95
14688529--14688568	13	3.1	13	96	0	71	25	25	42	7	1.80
14689162--14689234	27	2.8	26	87	4	101	27	19	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14689162--14689241	26	3.0	26	87	3	106	27	18	26	27	1.98
14691095--14691147	26	2.0	26	92	0	88	24	18	28	28	1.98
14692159--14692211	26	2.0	26	85	0	70	28	18	22	30	1.98
14692155--14692514	196	1.8	197	82	4	467	23	26	26	23	2.00
14692672--14693423	368	2.0	366	82	3	886	22	28	27	22	1.99
14693956--14694006	26	2.0	26	84	7	68	33	15	23	27	1.95
14695349--14695641	158	1.8	162	82	3	387	23	28	27	19	1.98
14695337--14695862	159	3.3	157	75	8	438	23	29	26	20	1.98
14695836--14695888	26	2.0	26	96	0	97	24	16	28	30	1.97
14695862--14696976	538	2.1	534	81	3	1304	24	28	26	20	1.99
14696754--14696805	26	2.0	25	96	3	95	28	21	23	26	1.99
14697254--14697306	25	2.1	26	85	3	72	28	20	26	24	1.99
14697647--14697699	26	2.0	26	92	7	90	28	20	24	26	1.99
14698059--14698083	13	1.9	13	100	0	50	32	28	40	0	1.57
14698545--14698597	26	2.0	26	89	7	81	30	18	22	28	1.98
14699024--14699102	26	3.0	25	94	3	131	29	20	24	26	1.99
14699417--14699469	26	2.0	26	89	7	81	28	18	24	28	1.98
14699443--14699872	159	2.7	158	79	4	445	23	30	27	18	1.98
14699917--14699969	26	2.0	26	88	0	79	26	18	26	28	1.98
14700783--14700850	34	2.0	34	82	0	82	23	44	11	20	1.84
14700858--14700910	26	2.0	26	89	7	81	30	18	24	26	1.98
14701505--14701557	26	2.0	26	85	7	72	24	18	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14700831--14702100	658	1.9	647	80	5	1473	25	27	24	22	2.00
14702590--14702666	26	3.0	26	98	0	145	24	19	29	25	1.98
14702798--14703167	184	2.0	184	86	1	508	26	28	24	20	1.99
14702614--14703286	343	2.0	343	83	4	849	25	28	24	21	1.99
14704207--14704709	159	3.2	159	74	8	414	24	29	26	19	1.99
14705053--14705103	26	2.0	26	92	0	84	25	17	29	27	1.98
14704490--14705370	355	2.4	359	81	4	968	23	29	27	20	1.99
14705397--14705722	179	1.8	179	81	5	408	26	27	26	19	1.99
14706320--14706398	26	3.0	26	89	7	108	29	20	24	26	1.99
14707400--14707452	26	2.0	26	96	0	97	24	20	28	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138