genome.fa.s124.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  116  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16974412--16974914	158	3.2	158	76	6	485	23	32	25	18	1.97
16974888--16974939	25	2.0	26	92	3	88	26	21	25	26	1.99
16979790--16979842	26	2.0	26	92	7	90	28	20	24	26	1.99
16979815--16980219	159	2.5	159	73	5	379	24	30	26	18	1.98
16979603--16980876	514	2.5	512	82	2	1453	23	28	26	21	1.99
16980329--16980798	159	3.0	159	74	7	425	22	30	28	19	1.98
16980806--16980857	25	2.0	26	85	3	70	26	19	23	30	1.98
16981628--16981679	25	2.0	26	92	3	88	25	17	28	28	1.97
16981652--16982107	171	2.7	171	78	3	416	23	28	26	21	1.99
16983171--16983223	26	2.0	26	85	7	72	32	18	20	28	1.97
16983354--16983406	26	2.0	26	92	0	88	22	20	30	26	1.98
16985035--16985087	26	2.0	26	92	0	88	24	18	28	28	1.98
16985828--16986276	159	2.8	158	74	6	352	23	28	27	20	1.99
16987562--16987617	26	2.2	26	83	6	69	28	17	21	32	1.96
16987726--16988017	159	1.8	159	80	2	345	22	32	29	16	1.96
16988064--16988116	26	2.0	26	92	7	90	26	20	26	26	1.99
16988797--16988849	26	2.0	26	92	7	90	26	20	26	26	1.99
16989587--16990151	159	3.6	156	75	10	484	24	31	27	17	1.97
16990557--16990609	26	2.0	26	92	7	90	28	20	24	26	1.99
16991059--16991111	26	2.0	26	96	0	97	24	20	28	26	1.99
16997525--16998064	159	3.4	156	77	4	494	22	30	27	19	1.98
16998037--16998195	78	2.0	78	100	0	318	23	23	35	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16998432--16998484	26	2.0	26	85	7	72	32	18	22	26	1.97
16999628--16999680	26	2.0	26	85	0	70	24	20	26	28	1.99
17000375--17000877	158	3.2	156	78	4	508	22	30	27	18	1.97
17001677--17001729	26	2.0	26	88	0	79	24	20	26	28	1.99
17002923--17003286	159	2.3	159	78	3	356	24	30	26	19	1.98
17003780--17004281	158	3.2	157	81	4	553	23	31	27	18	1.97
17004257--17004307	26	2.0	26	92	0	84	27	15	27	29	1.96
17004980--17005032	26	2.0	26	89	7	81	30	20	22	26	1.98
17005164--17005216	26	2.0	26	92	0	88	26	20	26	26	1.99
17013919--17013971	26	2.0	26	92	0	88	28	28	16	26	1.97
17014083--17014424	159	2.1	158	78	4	364	21	26	29	23	1.99
17014474--17014624	58	2.6	58	95	0	275	23	15	43	17	1.87
17014706--17014756	26	2.0	26	96	0	93	25	29	19	25	1.99
17015613--17015665	26	2.0	26	89	7	81	28	24	20	26	1.99
17016809--17017350	299	1.8	299	84	2	748	18	28	28	24	1.98
17018204--17018255	26	2.0	26	92	0	86	28	28	17	25	1.97
17019055--17019108	26	2.0	27	89	10	85	29	22	18	29	1.97
17019082--17019434	157	2.2	156	77	7	365	21	28	28	20	1.98
17019554--17019606	26	2.0	26	88	0	79	26	26	18	28	1.98
17019024--17020139	501	2.2	498	82	3	1271	20	26	28	23	1.99
17020055--17020109	26	2.2	25	90	9	85	25	25	20	29	1.99
17020897--17020949	26	2.0	26	85	7	72	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17021618--17021670	26	2.0	26	92	0	88	26	26	20	26	1.99
17022105--17022157	26	2.0	26	85	7	72	28	22	18	30	1.98
17022462--17022512	26	2.0	26	84	7	68	31	25	11	31	1.92
17021876--17022856	356	2.7	361	78	8	911	21	26	28	24	1.99
17022600--17022955	171	2.1	171	86	3	484	18	26	30	23	1.98
17023013--17023065	26	2.0	26	92	0	88	24	28	20	26	1.99
17025134--17025186	26	2.0	26	92	0	88	28	24	18	28	1.98
17025634--17025686	26	2.0	26	89	7	81	28	24	18	28	1.98
17026014--17026066	26	2.0	26	85	0	70	30	24	18	26	1.98
17026180--17026538	159	2.3	159	79	7	390	18	26	31	23	1.97
17024734--17026721	875	2.3	871	81	4	2235	21	26	28	23	1.99
17026510--17026562	26	2.0	26	82	7	63	28	18	20	32	1.97
17026352--17026747	184	2.1	183	82	1	470	21	26	27	24	2.00
17026694--17026746	26	2.0	26	85	7	72	30	24	16	28	1.97
17027804--17028660	367	2.4	356	81	3	928	19	26	29	24	1.98
17029241--17029349	26	4.0	26	88	8	130	25	22	21	31	1.98
17029497--17029548	26	2.0	26	88	7	79	32	21	17	28	1.96
17030228--17030280	26	2.0	26	96	0	97	26	28	20	24	1.99
17030308--17030900	157	3.8	158	76	5	563	19	26	30	23	1.98
17030254--17030912	315	2.1	317	83	3	853	20	26	29	22	1.99
17030886--17030938	26	2.0	26	92	0	88	28	28	18	24	1.98
17031520--17031572	26	2.0	26	96	0	97	30	28	16	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17032713--17032764	26	2.0	26	88	0	77	30	25	15	28	1.96
17032673--17033120	184	2.3	193	80	7	470	22	26	27	23	1.99
17033147--17033172	11	2.4	11	100	0	52	26	30	23	19	1.98
17036125--17036198	35	2.1	35	97	0	139	29	25	18	25	1.98
17036467--17036519	26	2.0	26	86	13	74	30	22	15	32	1.94
17036556--17037166	159	3.9	157	76	4	512	19	28	29	21	1.98
17037139--17037191	26	2.0	26	89	7	81	30	26	16	26	1.97
17037509--17037561	26	2.0	27	92	7	92	28	26	20	24	1.99
17037693--17037745	26	2.0	26	92	7	90	26	24	20	28	1.99
17037902--17037954	26	2.0	26	88	0	79	26	28	20	24	1.99
17038014--17038432	158	2.6	156	78	6	430	17	28	28	25	1.97
17038405--17038457	26	2.0	26	85	7	72	26	24	20	28	1.99
17038532--17038969	171	2.6	170	84	4	483	20	30	27	21	1.98
17038942--17038992	26	2.0	26	96	0	93	25	29	19	25	1.99
17038968--17039464	158	3.2	158	72	7	445	20	27	28	23	1.99
17039783--17039835	26	2.0	26	89	7	81	26	22	20	30	1.98
17040518--17040570	26	2.0	26	92	0	88	32	28	15	24	1.95
17041019--17041071	26	2.0	26	82	7	63	26	18	22	32	1.97
17041215--17041267	26	2.0	26	89	7	81	28	26	18	26	1.98
17040863--17041426	184	3.0	183	74	10	517	21	25	27	24	1.99
17042279--17042331	26	2.0	26	89	7	81	30	28	16	24	1.97
17042749--17042801	26	2.0	26	92	7	90	28	26	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17043162--17043214	26	2.0	26	82	7	63	30	22	16	30	1.96
17046888--17046940	26	2.0	26	92	0	88	30	26	16	26	1.97
17047415--17047467	26	2.0	26	92	7	90	26	28	22	22	1.99
17048338--17048387	26	1.9	26	88	8	75	26	24	18	32	1.97
17051808--17052089	141	2.0	141	97	0	528	25	26	22	25	2.00
17052408--17052439	13	2.5	13	100	0	64	21	25	31	21	1.98
17053930--17054161	116	2.0	116	94	0	410	21	31	17	29	1.96
17055294--17055346	26	2.0	26	88	0	79	26	24	20	28	1.99
17055320--17055822	159	3.2	157	73	9	347	20	25	30	23	1.99
17055796--17055848	26	2.0	26	92	7	90	26	24	20	28	1.99
17056100--17056126	13	2.1	13	100	0	54	7	44	25	22	1.79
17056534--17056984	158	2.8	159	77	6	500	18	27	30	23	1.97
17063242--17063294	26	2.0	26	85	0	70	26	24	18	30	1.98
17063268--17063802	159	3.4	158	74	7	422	20	26	30	22	1.98
17063928--17063980	26	2.0	26	92	0	88	28	28	18	24	1.98
17064113--17064165	26	2.0	26	89	7	81	24	24	20	30	1.99
17065517--17065569	26	2.0	26	85	7	72	28	28	20	22	1.99
17066202--17066253	26	2.0	26	92	0	86	26	23	19	30	1.98
17067086--17067138	26	2.0	26	89	7	81	28	26	18	26	1.98
17067574--17067626	26	2.0	26	96	0	97	24	24	20	30	1.99
17068799--17068851	26	2.0	26	89	7	81	28	26	18	26	1.98
17069429--17069481	26	2.0	26	92	0	88	28	28	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17070140--17070192	26	2.0	26	89	7	81	28	24	18	28	1.98
17070487--17070536	26	1.9	26	88	8	75	36	28	10	26	1.88
17070827--17070878	26	2.0	25	96	3	95	30	23	17	28	1.97
17071827--17071877	26	2.0	26	84	7	68	25	29	15	29	1.96
17072173--17072670	159	3.1	156	77	8	464	21	27	28	22	1.99
17073136--17073540	159	2.6	159	77	6	417	18	27	28	25	1.98
17073512--17073564	26	2.0	26	85	7	72	30	24	18	26	1.98
17074235--17074287	26	2.0	26	88	0	79	30	28	16	24	1.97
17074418--17074470	26	2.0	26	92	0	88	28	28	18	24	1.98
17074161--17074628	183	2.6	183	86	1	643	19	30	27	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138