genome.fa.s124.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  41  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8995224--8995272	25	2.0	25	83	0	62	14	4	12	69	1.33
8995315--8995894	58	9.9	58	85	10	777	45	7	11	35	1.68
9006916--9006959	21	2.0	22	83	12	56	43	0	34	22	1.54
9008573--9008608	18	2.0	18	100	0	72	27	11	38	22	1.88
9014515--9014564	24	2.2	24	82	7	59	26	10	18	46	1.80
9014882--9014929	25	2.0	24	88	12	71	54	0	0	45	0.99
9015922--9016530	144	4.2	142	72	9	439	36	13	11	38	1.81
9019275--9019315	4	9.8	4	84	10	55	46	0	0	53	1.00
9019273--9019353	16	5.3	15	77	12	67	45	0	0	54	0.99
9019815--9019849	15	2.2	16	90	5	54	62	0	0	37	0.95
9023588--9024011	141	3.0	141	95	0	767	33	12	12	40	1.81
9027611--9027665	20	3.0	18	80	15	60	21	3	5	69	1.25
9029127--9029199	26	2.9	24	78	13	67	45	6	8	39	1.61
9030599--9030670	20	3.5	20	86	5	92	16	4	26	52	1.62
9031024--9031101	20	3.8	21	73	18	65	23	7	0	69	1.14
9031094--9031122	3	9.7	3	100	0	58	31	0	0	68	0.89
9031019--9031122	43	2.5	41	79	11	113	24	5	0	70	1.09
9035198--9035245	20	2.4	19	76	13	51	12	27	0	60	1.32
9036266--9036314	23	2.1	24	88	7	75	22	4	2	71	1.13
9041322--9041362	17	2.4	17	95	0	73	31	4	24	39	1.76
9050428--9051342	49	18.8	49	79	7	899	28	13	21	36	1.92
9050426--9051339	144	6.3	144	80	7	849	28	13	21	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9051298--9051396	52	2.0	50	84	6	128	31	11	17	40	1.84
9051558--9051667	9	11.9	9	68	25	52	75	6	0	17	1.06
9051560--9051659	18	5.2	18	76	19	87	75	6	1	18	1.07
9051564--9051655	12	8.2	12	78	18	58	72	6	1	19	1.12
9051584--9051662	30	2.7	30	86	9	117	75	3	0	20	0.95
9051569--9051667	49	2.1	47	84	3	126	75	5	1	18	1.04
9051577--9051659	42	2.0	40	86	9	114	75	4	0	19	0.97
9058033--9058080	25	1.9	25	82	0	60	64	0	0	35	0.94
9059063--9059151	42	2.1	42	85	2	117	34	11	6	47	1.66
9059523--9059563	3	13.7	3	100	0	82	65	0	0	34	0.93
9060446--9060496	21	2.4	22	80	6	59	56	0	0	43	0.99
9060508--9060544	12	3.2	12	92	3	58	54	0	0	45	1.00
9061816--9061896	18	4.4	17	72	15	54	4	8	8	77	1.11
9063519--9063644	37	3.3	37	66	20	105	39	9	11	39	1.73
9063497--9063650	78	2.0	78	96	0	281	37	10	11	41	1.75
9067246--9067288	22	2.0	22	90	0	68	41	4	11	41	1.62
9067912--9067947	18	2.0	18	88	0	54	27	22	19	30	1.98
9069050--9069085	18	2.0	18	100	0	72	44	16	22	16	1.86
9076105--9076147	14	3.0	14	83	16	61	60	0	0	39	0.97
9076123--9076192	32	2.2	32	82	5	79	50	0	0	50	1.00
9077634--9077918	143	2.0	143	98	0	552	34	16	14	34	1.89
9086899--9086939	21	2.0	21	85	9	57	46	0	17	36	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9100881--9100933	14	4.1	14	76	18	69	62	5	5	26	1.40
9102656--9102699	22	2.0	22	86	0	61	38	0	2	59	1.10
9103874--9103924	20	2.4	21	84	15	70	39	1	0	58	1.09
9104281--9104349	28	2.5	28	76	11	79	44	1	1	52	1.19
9111935--9112274	134	2.6	134	79	4	314	38	17	15	28	1.90
9117653--9117767	3	40.0	3	70	17	75	35	5	0	58	1.27
9117651--9117769	8	15.4	7	76	16	64	36	5	0	57	1.26
9117641--9117770	46	2.7	45	80	14	129	36	6	0	56	1.29
9117646--9117770	58	2.0	65	80	11	147	36	5	0	57	1.28
9118251--9118312	31	2.0	31	81	9	72	22	11	14	51	1.74
9118581--9118620	21	1.9	21	84	0	53	17	5	7	70	1.30
9118656--9118694	15	2.4	18	72	28	50	33	0	5	61	1.18
9122089--9122218	67	1.9	67	84	0	170	40	21	4	33	1.74
9134122--9134183	29	2.1	29	82	5	72	40	9	16	33	1.81
9138750--9138854	53	2.0	53	90	0	165	26	18	12	42	1.85
9139296--9139332	14	2.4	17	86	13	53	16	5	2	75	1.10
9140285--9140685	59	6.9	58	90	4	598	44	8	13	33	1.75
9140292--9140685	116	3.4	116	93	4	645	44	8	13	33	1.74
9149030--9149103	7	10.7	7	84	12	84	78	0	12	9	0.97
9149030--9149103	15	5.4	14	84	13	84	78	0	12	9	0.97
9149030--9149094	29	2.2	31	86	10	91	76	0	12	10	1.01
9149029--9149093	8	8.8	8	90	10	95	76	0	12	10	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9150111--9150202	40	2.3	40	96	1	166	20	19	17	42	1.89
9150176--9150227	25	2.1	25	100	0	104	23	13	19	44	1.86
9150136--9150265	65	2.0	65	98	0	251	22	16	20	41	1.90
9150201--9150337	41	3.4	41	92	5	226	21	18	23	35	1.96
9150344--9150430	7	12.9	7	85	8	110	87	11	0	1	0.60
9150346--9150430	27	3.3	26	85	8	111	87	11	0	1	0.61
9150344--9150422	1	79.0	1	76	0	77	88	10	0	1	0.57
9151132--9151187	26	2.3	24	82	14	71	32	3	16	48	1.63
9151315--9151359	20	2.3	18	82	14	54	22	31	24	22	1.99
9151745--9152136	114	3.4	116	91	6	609	44	8	13	33	1.74
9155916--9155968	3	18.0	3	84	3	54	66	7	0	26	1.18
9162894--9162934	12	3.5	12	80	16	50	68	0	2	29	1.03
9162945--9162988	21	2.0	22	82	4	54	56	2	0	40	1.11
9164189--9164218	5	6.0	5	92	0	51	63	0	0	36	0.95
9164189--9164232	15	2.7	15	82	10	52	65	0	0	34	0.93
9164478--9164526	19	2.6	19	80	0	62	44	20	6	28	1.75
9165090--9165129	18	2.3	17	87	12	55	47	0	12	40	1.41
9184519--9184549	2	15.5	2	100	0	62	0	0	48	51	1.00
9193428--9193457	13	2.4	13	94	5	53	50	0	0	50	1.00
9198342--9198366	2	12.5	2	100	0	50	52	0	0	48	1.00
9215546--9215598	19	2.8	19	80	8	56	60	1	3	33	1.26
9215536--9215598	20	3.2	19	72	18	58	58	1	3	36	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9219753--9219802	17	2.9	16	78	21	57	8	2	6	84	0.86
9219753--9219806	12	4.5	11	78	17	54	9	1	5	83	0.88
9219811--9219845	14	2.4	14	95	4	61	25	0	0	74	0.82
9219942--9219981	19	2.1	19	90	0	62	32	2	12	52	1.52
9220097--9220123	14	1.9	14	100	0	54	51	3	14	29	1.60
9221335--9221400	23	2.7	24	83	9	80	24	27	3	45	1.68
9221335--9221416	27	3.2	26	79	13	107	24	26	3	45	1.70
9225936--9226069	45	3.0	44	81	5	142	28	8	17	46	1.76
9225931--9226060	23	5.7	23	68	9	97	26	8	18	46	1.77
9226017--9226163	23	6.5	23	67	11	70	34	4	11	50	1.58
9226088--9226137	24	2.1	24	84	0	64	30	2	10	58	1.42
9226113--9226158	21	2.2	21	84	7	58	32	2	10	54	1.47
9226045--9226190	45	3.3	44	75	11	152	34	4	13	48	1.61
9226397--9226435	17	2.3	17	86	0	51	41	10	10	38	1.73
9226471--9226541	36	2.0	36	83	5	90	33	18	11	36	1.86
9226679--9226726	18	2.7	18	87	3	62	39	14	8	37	1.76
9228246--9228288	13	3.5	12	81	12	52	9	2	9	79	1.03
9236458--9236492	16	2.2	16	94	0	61	31	14	11	42	1.81
9238453--9238496	23	2.0	22	86	4	61	52	20	2	25	1.58
9238502--9238578	24	3.3	24	66	20	63	42	14	7	35	1.74
9238490--9238596	46	2.3	45	75	9	117	43	15	7	32	1.75
9239823--9239867	22	2.0	23	86	4	65	37	2	0	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9241044--9241098	28	2.0	28	88	0	83	52	7	1	38	1.40
9241072--9241118	20	2.3	20	88	0	67	53	12	2	31	1.51
9246719--9246775	15	3.8	15	86	9	71	1	14	0	84	0.71
9246718--9246765	22	2.2	21	92	3	78	0	16	0	83	0.65
9246732--9246778	13	3.7	12	86	13	67	2	10	0	87	0.63
9247258--9247397	7	21.3	7	73	11	64	22	0	34	42	1.54
9247263--9247332	26	2.7	26	80	6	70	24	0	32	42	1.55
9247269--9247359	33	2.8	32	81	5	101	23	0	34	42	1.54
9247284--9247391	20	5.5	20	75	6	62	26	0	30	42	1.56
9247258--9247396	13	10.6	13	68	7	57	23	0	34	42	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138