genome.fa.s124.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  54  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11208637--11208698	11	5.5	11	83	11	81	80	0	3	16	0.83
11209577--11209748	4	42.8	4	67	16	70	65	4	3	26	1.29
11209614--11209652	18	2.2	18	90	0	60	61	5	5	28	1.39
11209630--11209662	14	2.3	15	89	5	50	63	6	3	27	1.32
11209642--11209742	26	3.5	27	74	19	80	65	4	2	26	1.28
11209771--11209821	25	2.0	25	84	0	66	74	1	1	21	1.02
11212157--11212227	19	3.7	19	77	11	65	18	2	35	43	1.65
11215810--11215932	20	6.2	20	74	5	99	34	1	18	44	1.60
11215810--11215932	41	3.1	40	80	8	119	34	1	18	44	1.60
11216149--11216200	21	2.5	21	80	0	59	53	11	17	17	1.72
11216331--11216368	20	1.9	20	94	0	67	23	0	28	47	1.52
11216334--11216401	20	3.4	20	79	6	66	30	0	20	48	1.50
11219875--11219931	16	3.6	16	69	9	53	54	1	1	42	1.21
11220176--11220554	72	5.3	72	72	6	254	43	5	12	39	1.65
11220343--11220540	68	2.8	71	77	9	206	42	5	13	38	1.67
11224009--11224059	26	1.9	27	84	4	68	19	19	19	41	1.91
11224830--11224882	19	2.8	18	85	5	61	5	3	5	84	0.85
11224840--11224882	9	4.7	9	85	5	59	6	0	4	88	0.63
11224851--11224882	10	3.3	10	95	4	57	9	0	0	90	0.45
11225210--11225388	88	2.0	87	84	3	234	41	16	18	22	1.89
11225274--11225631	110	3.3	110	85	0	446	39	17	19	23	1.92
11225587--11225654	23	3.0	23	84	2	84	27	20	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11225506--11225761	132	1.9	133	91	0	415	37	18	19	23	1.94
11225604--11225871	110	2.4	109	88	3	333	38	18	19	23	1.93
11225829--11225893	23	2.9	22	88	4	94	30	21	23	24	1.99
11225980--11226029	23	2.2	23	88	0	73	28	16	22	34	1.95
11226104--11226161	23	2.6	23	83	8	66	29	15	24	31	1.95
11226358--11226426	23	3.0	23	82	2	77	30	18	21	28	1.97
11226486--11226542	22	2.5	22	72	13	62	29	15	19	35	1.93
11226499--11226818	155	2.1	155	85	2	428	36	17	20	25	1.94
11226626--11226708	22	3.7	22	81	1	85	30	15	24	30	1.96
11226666--11226715	23	2.2	23	88	0	73	32	16	22	30	1.95
11225592--11227160	531	3.0	526	77	6	1522	38	17	19	24	1.93
11226689--11226935	110	2.2	110	83	2	300	36	17	21	24	1.94
11227029--11227092	23	2.8	23	88	2	85	34	21	21	21	1.97
11225719--11227194	133	11.1	130	75	7	996	38	17	19	25	1.93
11225719--11227222	398	3.8	395	75	11	1283	38	17	19	25	1.93
11227345--11227449	41	2.6	41	84	6	133	27	15	20	36	1.93
11229149--11229201	17	3.1	17	86	5	70	1	7	5	84	0.82
11229776--11229800	9	2.8	9	100	0	50	16	0	0	84	0.63
11236105--11236152	16	3.0	15	80	20	53	75	6	0	18	1.01
11237021--11237093	28	2.6	30	78	12	91	31	9	27	31	1.89
11237012--11237098	28	3.1	27	76	9	77	28	10	32	28	1.90
11237344--11237393	9	5.6	9	90	0	55	38	0	2	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11237344--11237377	3	11.3	3	100	0	68	35	0	0	64	0.94
11237942--11237974	17	1.9	17	88	11	50	84	9	3	3	0.82
11240860--11241003	52	2.8	53	79	5	177	22	8	13	56	1.63
11269256--11269287	16	2.0	16	93	0	55	25	34	6	34	1.81
11269930--11269966	18	2.1	18	89	0	56	21	37	8	32	1.83
11288415--11288495	25	3.2	25	76	10	76	32	8	38	20	1.83
11288784--11288887	52	2.0	52	88	3	156	38	8	26	25	1.85
11299822--11299876	22	2.5	22	100	0	110	32	25	18	23	1.97
11312498--11312551	27	1.9	29	88	7	85	57	7	5	29	1.49
11312642--11312678	18	2.1	18	89	0	56	59	18	0	21	1.38
11312691--11312729	19	2.1	18	85	9	51	58	5	2	33	1.33
11312721--11312773	24	2.2	24	86	0	70	49	15	5	30	1.67
11312821--11312913	8	11.1	8	74	17	57	80	1	5	12	0.93
11312823--11312907	23	3.9	21	73	18	57	80	1	4	14	0.94
11312854--11312919	13	4.8	13	77	14	60	84	1	7	6	0.82
11312853--11312919	34	2.0	34	85	11	93	85	1	7	5	0.81
11312859--11312919	14	4.3	14	76	12	61	85	1	8	4	0.80
11313862--11313891	15	2.1	14	93	6	51	70	6	0	23	1.11
11318083--11318126	21	2.2	20	91	4	70	18	6	6	68	1.35
11318261--11318292	3	10.7	3	100	0	64	34	0	31	34	1.58
11318913--11319001	22	4.0	22	71	15	76	28	10	28	33	1.89
11318912--11318996	44	1.9	44	83	4	109	27	9	29	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11319015--11319224	106	2.0	104	81	3	242	34	10	16	38	1.84
11319192--11319240	22	2.2	22	85	7	64	28	6	24	40	1.79
11319080--11319346	126	2.1	128	81	4	308	32	10	18	37	1.86
11319595--11319661	18	3.7	18	91	0	80	40	8	22	28	1.84
11320961--11321116	85	1.8	85	85	0	222	23	20	5	50	1.68
11321103--11321157	16	3.6	14	81	13	56	1	14	1	81	0.85
11321109--11321156	22	2.2	22	84	0	60	2	12	2	83	0.83
11321105--11321163	10	5.7	10	76	7	55	1	15	1	81	0.86
11321119--11321158	15	2.7	15	92	0	62	0	10	2	87	0.63
11328661--11328723	19	3.2	19	81	6	72	26	0	1	71	0.95
11331822--11331970	51	2.9	51	77	3	147	36	18	8	35	1.82
11331849--11331970	52	2.4	51	77	4	129	37	20	6	35	1.79
11332473--11332749	119	2.3	119	78	1	286	40	15	23	19	1.91
11332611--11333421	118	6.8	118	72	8	419	41	15	23	19	1.89
11334601--11334631	8	3.8	8	95	4	53	0	19	0	80	0.71
11338461--11338501	19	2.2	19	87	12	59	75	4	7	12	1.16
11338999--11339145	51	2.8	52	82	3	181	34	19	8	38	1.81
11339009--11339145	52	2.7	51	82	3	177	35	20	7	36	1.81
11339217--11339321	49	2.1	51	85	7	144	46	6	13	33	1.69
11339357--11339579	48	4.6	48	86	7	292	44	3	20	30	1.68
11339332--11339587	48	5.3	48	83	6	277	46	4	19	30	1.70
11339559--11339677	36	3.3	36	78	7	107	47	5	15	31	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11339559--11339677	37	3.3	37	77	9	111	47	5	15	31	1.70
11339621--11339698	37	2.1	37	80	4	84	55	5	8	30	1.53
11339629--11339733	37	2.8	37	75	13	92	54	4	7	33	1.50
11342751--11342800	26	1.9	26	84	8	66	22	6	16	56	1.62
11345109--11345200	28	3.3	27	78	14	105	26	1	1	71	0.99
11345127--11345197	17	4.3	17	77	15	69	25	1	0	73	0.92
11345114--11345199	17	4.6	18	73	21	61	25	1	1	72	0.99
11345127--11345201	23	3.3	23	71	20	61	25	1	0	73	0.91
11345109--11345201	29	3.3	27	77	12	98	25	1	1	72	0.99
11345494--11345556	5	12.4	5	90	9	101	17	0	3	79	0.86
11345600--11345676	34	2.3	34	82	8	95	50	15	14	19	1.78
11345811--11345877	35	1.9	35	87	0	98	44	4	23	26	1.72
11347013--11347063	16	3.3	15	76	15	50	7	9	1	80	0.98
11347007--11347069	15	4.1	15	78	17	58	7	12	1	77	1.05
11353404--11353463	10	6.4	9	79	12	52	83	5	11	0	0.80
11353404--11353470	13	5.2	13	78	18	70	83	5	10	0	0.80
11354414--11354529	51	2.3	51	86	4	153	31	13	15	39	1.86
11355368--11355624	142	1.8	142	82	7	324	30	10	14	44	1.78
11356501--11356633	50	2.6	52	81	5	166	24	17	16	41	1.89
11356861--11356992	53	2.5	51	82	6	140	23	18	17	40	1.91
11357038--11357182	52	2.8	52	77	9	143	25	20	14	40	1.90
11356440--11357182	176	4.2	174	78	9	681	29	16	16	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11361328--11361439	59	1.9	58	81	7	136	41	3	12	42	1.60
11361447--11361679	59	3.9	59	80	9	233	42	6	11	39	1.67
11368545--11368610	15	4.5	14	71	16	53	75	0	16	7	1.02
11368547--11368610	29	2.2	28	83	10	85	76	0	15	7	1.00
11368894--11368968	38	2.0	38	91	0	123	30	33	9	26	1.88
11369573--11369607	16	2.2	16	89	0	52	40	11	14	34	1.82
11380669--11380705	3	12.3	3	100	0	74	32	0	0	67	0.91
11383421--11383474	5	11.0	5	76	11	58	14	1	5	77	1.03
11383422--11383476	19	2.8	19	86	8	58	12	1	5	80	0.97
11383737--11383865	34	3.8	34	78	0	132	47	12	22	17	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138