genome.fa.s124.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  127  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17932713--17932763	26	2.0	26	96	0	93	27	17	27	27	1.98
17933788--17933838	26	2.0	26	100	0	102	27	19	25	27	1.99
17932984--17934749	884	2.0	886	88	2	2598	27	23	23	26	2.00
17934851--17934901	26	2.0	26	96	0	93	27	17	25	29	1.98
17934668--17935062	179	2.2	183	83	5	480	22	24	28	24	1.99
17935749--17935801	26	2.0	26	96	0	97	26	18	26	28	1.98
17936657--17937072	153	2.7	153	77	5	377	24	27	28	19	1.99
17937841--17937893	26	2.0	26	92	0	88	28	18	26	26	1.98
17938731--17938781	26	2.0	26	96	0	93	27	17	25	29	1.98
17936968--17938656	872	1.9	887	84	7	2254	25	23	24	25	2.00
17939655--17940018	154	2.3	154	81	3	397	25	27	26	20	1.99
17940662--17940711	26	1.9	26	91	0	82	30	12	26	32	1.92
17941233--17941285	26	2.0	26	88	0	79	28	20	24	26	1.99
17941413--17941515	26	4.0	26	100	0	206	27	19	26	27	1.99
17942340--17942392	26	2.0	26	88	0	79	24	20	26	28	1.99
17942519--17942569	26	2.0	26	92	0	84	25	17	25	31	1.97
17942321--17942819	179	2.8	177	86	4	691	22	26	28	21	1.99
17942698--17942748	26	2.0	26	100	0	102	27	19	25	27	1.99
17942937--17942987	26	2.0	26	88	0	75	31	15	23	29	1.95
17943836--17943888	26	2.0	26	88	0	79	28	20	26	24	1.99
17943834--17944177	179	1.9	179	86	2	494	25	27	26	20	1.99
17945446--17945498	26	2.0	26	89	7	81	30	28	16	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17945947--17945999	26	2.0	26	92	7	90	26	24	20	28	1.99
17945088--17946195	501	2.2	502	80	4	1230	20	26	29	24	1.99
17946315--17946367	26	2.0	26	92	0	88	26	26	20	26	1.99
17947955--17948477	158	3.3	158	76	3	523	19	26	30	24	1.98
17948450--17948502	26	2.0	26	89	7	81	28	24	18	28	1.98
17950028--17950106	26	3.0	26	94	0	140	27	29	18	24	1.98
17950556--17950608	26	2.0	26	89	7	81	24	24	22	28	2.00
17951423--17951811	159	2.4	159	79	6	419	18	26	29	24	1.98
17952330--17952851	159	3.3	158	76	5	437	19	27	29	24	1.98
17952226--17952851	159	4.0	157	73	7	406	18	28	29	23	1.98
17952187--17952850	317	2.1	317	82	2	805	19	28	29	23	1.98
17952821--17952876	26	2.2	26	90	6	87	30	25	17	26	1.97
17954123--17954175	26	2.0	26	88	0	79	30	28	16	24	1.97
17954450--17954502	26	2.0	26	85	7	72	28	22	20	28	1.99
17954424--17955030	197	3.3	191	78	12	560	20	25	29	25	1.99
17955534--17955585	26	2.0	26	92	7	88	26	25	19	28	1.98
17955656--17955688	11	3.0	11	95	0	57	21	24	36	18	1.95
17956738--17956790	26	2.0	26	85	7	72	28	22	18	30	1.98
17957130--17957598	159	2.9	157	76	5	449	21	26	28	23	1.99
17957717--17957768	26	2.0	26	92	0	86	26	26	19	26	1.99
17958170--17958222	26	2.0	26	82	7	63	28	18	18	33	1.95
17958584--17958952	160	2.3	156	75	9	359	19	26	31	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17959835--17959887	26	2.0	26	92	0	88	26	26	20	26	1.99
17959861--17960385	159	3.3	155	76	7	518	20	24	29	24	1.99
17960677--17960729	26	2.0	26	92	0	88	28	28	18	24	1.98
17960703--17961366	159	4.2	161	76	8	549	20	27	29	23	1.99
17961994--17962587	158	3.7	160	76	7	509	19	29	29	22	1.98
17962705--17962757	26	2.0	26	85	0	70	26	26	20	26	1.99
17963947--17963999	26	2.0	26	96	0	97	26	28	20	24	1.99
17964131--17964183	26	2.0	26	89	7	81	28	24	18	28	1.98
17965345--17965397	26	2.0	26	89	7	81	28	24	18	28	1.98
17965721--17965773	26	2.0	26	88	0	79	26	24	22	26	2.00
17972565--17972617	26	2.0	26	88	0	79	26	24	20	28	1.99
17972591--17973093	158	3.2	158	76	5	505	19	27	30	22	1.98
17973068--17973119	26	2.0	26	88	7	79	32	21	17	28	1.96
17973262--17973314	26	2.0	26	92	0	88	32	28	15	24	1.95
17972963--17973317	196	1.8	196	88	2	543	21	27	28	23	1.99
17973344--17973629	158	1.8	156	80	4	342	18	29	29	22	1.97
17974471--17974523	26	2.0	26	92	0	88	28	28	18	24	1.98
17974533--17974999	159	2.9	157	80	7	491	17	26	31	23	1.97
17974497--17974998	158	3.2	156	77	9	493	18	26	30	24	1.98
17974972--17975024	26	2.0	26	85	7	72	28	24	18	28	1.98
17975717--17975766	26	1.9	26	95	0	91	26	26	18	30	1.98
17975815--17976106	159	1.8	160	83	5	385	17	27	31	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17976217--17976267	26	2.0	26	84	7	68	29	29	11	29	1.92
17976276--17976610	171	2.0	170	81	4	397	20	28	31	20	1.97
17976583--17976634	26	2.0	25	92	3	86	26	28	21	23	1.99
17976732--17976910	98	1.8	98	84	4	245	20	26	29	24	1.99
17976732--17976932	98	2.1	98	79	3	208	22	25	28	22	1.99
17977022--17977073	26	2.0	25	85	10	70	26	23	19	30	1.98
17977719--17977771	26	2.0	26	92	7	90	26	24	20	28	1.99
17978452--17978504	26	2.0	26	89	7	81	26	24	18	30	1.98
17977184--17979978	725	3.8	729	91	3	4101	27	23	22	26	2.00
17979178--17979230	26	2.0	26	92	7	90	26	24	20	28	1.99
17979924--17979976	26	2.0	26	88	0	79	28	30	18	22	1.98
17979950--17980449	159	3.2	157	76	7	474	19	27	30	22	1.98
17980057--17980450	158	2.5	156	79	8	402	17	27	30	23	1.97
17980423--17980475	26	2.0	26	92	7	90	26	24	20	28	1.99
17979854--17981506	514	3.2	510	81	5	1846	19	27	29	23	1.98
17981048--17981478	159	2.7	159	80	3	458	17	28	30	23	1.97
17981451--17981503	26	2.0	26	92	0	88	28	18	20	32	1.97
17982160--17982212	26	2.0	26	88	0	79	28	26	18	26	1.98
17982526--17982578	26	2.0	26	92	0	88	26	26	20	26	1.99
17982588--17983035	159	2.8	158	78	5	404	18	26	30	25	1.98
17983455--17983746	159	1.8	158	81	5	365	19	27	29	23	1.98
17983890--17983942	26	2.0	26	92	7	90	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17984688--17984995	171	1.8	171	79	1	366	21	28	29	20	1.98
17985139--17985191	26	2.0	26	92	7	90	30	24	16	28	1.97
17985862--17985914	26	2.0	26	88	0	79	26	28	20	24	1.99
17986046--17986098	26	2.0	26	89	7	81	26	22	22	28	1.99
17986801--17986853	26	2.0	26	89	7	81	28	30	16	24	1.97
17987493--17988026	157	3.4	159	77	6	609	19	26	29	23	1.98
17987389--17988156	317	2.4	314	90	3	1170	18	26	30	24	1.98
17987389--17988155	157	4.9	156	74	7	595	18	26	30	24	1.98
17988129--17988181	26	2.0	26	92	7	90	26	24	20	28	1.99
17988779--17989162	158	2.4	159	83	4	438	17	29	30	22	1.97
17989472--17989842	158	2.4	157	81	5	419	18	28	30	22	1.97
17989746--17990267	197	2.6	197	78	3	505	21	26	27	24	1.99
17990552--17990604	26	2.0	26	86	13	74	30	22	16	30	1.96
17990897--17990949	26	2.0	26	92	0	88	26	22	20	30	1.98
17990794--17991134	183	1.9	184	86	4	492	20	26	28	24	1.99
17991080--17991132	26	2.0	26	92	7	90	26	24	20	28	1.99
17991993--17992045	26	2.0	26	89	7	81	26	22	16	33	1.96
17992750--17993250	157	3.2	158	77	6	539	19	27	30	22	1.98
17993230--17993283	26	2.1	25	96	3	99	25	22	22	29	1.99
17993072--17993436	186	2.0	184	86	4	520	20	27	29	23	1.98
17994447--17994499	26	2.0	26	89	7	81	28	26	18	26	1.98
18000421--18000471	26	2.0	26	84	7	68	29	25	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18000263--18000827	196	3.0	184	76	11	599	20	27	29	23	1.99
18001117--18001169	26	2.0	26	89	7	81	28	24	18	28	1.98
18001239--18001264	11	2.4	11	100	0	52	26	38	23	11	1.89
18001782--18002341	158	3.5	157	75	7	472	18	27	29	24	1.98
18002398--18002429	12	2.7	12	95	0	55	34	31	31	3	1.73
18002386--18004206	171	10.9	169	71	12	900	20	26	29	22	1.99
18002853--18003364	158	3.2	157	76	5	492	20	26	29	23	1.98
18002588--18004206	317	4.9	315	72	12	1128	20	26	29	23	1.99
18003411--18003442	12	2.7	12	95	0	55	34	31	31	3	1.73
18003850--18004206	157	2.3	157	79	2	385	19	26	29	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138