genome.fa.s124.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  124  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17643290--17644593	695	1.9	697	82	3	1631	25	26	25	22	2.00
17645351--17645403	26	2.0	26	92	0	88	26	20	26	26	1.99
17646083--17646132	26	1.9	26	92	8	84	32	20	22	26	1.98
17646623--17646675	26	2.0	26	92	7	90	28	20	24	26	1.99
17646424--17646781	197	1.8	195	85	3	511	24	28	25	21	1.99
17646648--17647093	159	2.8	158	74	6	427	21	28	28	20	1.98
17647124--17647176	26	2.0	26	92	0	88	26	16	24	32	1.97
17647504--17647556	26	2.0	26	92	7	90	28	16	24	30	1.97
17647699--17647751	26	2.0	26	92	7	90	28	20	24	26	1.99
17647333--17647836	195	2.6	194	82	1	596	25	29	24	20	1.99
17647483--17648983	697	2.2	691	80	5	1591	24	27	25	22	2.00
17649524--17649556	11	3.0	11	90	0	57	21	36	27	15	1.93
17650165--17650217	26	2.0	26	85	7	72	30	18	22	28	1.98
17650728--17650780	26	2.0	26	89	7	81	28	18	24	28	1.98
17650856--17651181	158	2.1	159	84	2	424	20	32	28	18	1.96
17651221--17651273	26	2.0	26	89	7	81	30	16	24	28	1.97
17651575--17651627	26	2.0	26	89	7	81	28	18	24	28	1.98
17650891--17651691	355	2.3	355	83	1	991	23	29	27	20	1.99
17651405--17651930	196	2.7	195	83	5	616	23	28	27	20	1.99
17651771--17651823	26	2.0	26	89	7	81	28	18	24	28	1.98
17652126--17652178	26	2.0	26	89	7	81	28	18	26	26	1.98
17651601--17652371	355	2.2	355	84	2	969	23	28	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17652151--17652569	159	2.6	159	76	5	402	24	29	27	18	1.98
17653576--17653628	26	2.0	26	96	0	97	30	20	24	24	1.99
17654077--17654129	26	2.0	26	88	0	79	24	16	28	30	1.97
17654798--17654850	26	2.0	26	89	7	81	30	18	22	28	1.98
17655705--17655757	26	2.0	26	89	7	81	30	18	22	28	1.98
17655703--17656095	185	2.1	185	83	2	486	24	28	26	20	1.99
17655928--17656358	157	2.7	155	83	5	499	22	31	28	17	1.96
17656390--17656442	26	2.0	26	85	0	70	26	16	26	30	1.97
17656779--17657181	159	2.5	158	79	5	429	26	30	25	17	1.97
17656779--17657281	158	3.2	159	77	6	473	24	31	25	18	1.98
17657255--17657307	26	2.0	26	92	0	88	24	18	28	28	1.98
17664151--17664196	21	2.2	21	84	0	56	8	45	17	28	1.78
17664391--17664443	26	2.0	26	85	0	70	24	15	28	32	1.95
17665273--17665325	26	2.0	26	92	0	88	24	18	28	28	1.98
17665995--17666047	26	2.0	26	85	7	72	26	20	24	28	1.99
17666321--17666373	26	2.0	26	88	0	79	26	20	28	24	1.99
17667375--17667425	26	2.0	26	92	0	84	29	19	27	23	1.98
17667790--17668598	158	5.1	157	73	7	535	23	30	27	18	1.98
17667936--17668598	316	2.1	317	84	3	870	23	30	27	18	1.98
17668420--17668781	183	2.0	183	83	3	460	22	27	27	22	1.99
17668265--17668900	341	1.9	342	79	4	719	23	29	26	20	1.99
17668265--17668940	342	2.0	342	78	5	715	23	29	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17668604--17669042	159	2.8	157	80	3	459	23	29	27	19	1.98
17668112--17669149	500	2.1	498	81	6	1233	23	29	26	19	1.98
17669072--17669124	26	2.0	26	89	7	81	26	20	26	26	1.99
17669281--17669333	26	2.0	26	89	7	81	30	22	22	24	1.99
17669306--17669809	159	3.2	159	74	5	412	24	29	26	19	1.98
17669626--17669990	184	2.0	184	80	3	421	24	28	25	21	1.99
17669993--17670562	159	3.6	159	74	7	507	21	30	28	18	1.97
17669281--17670306	501	2.0	502	81	2	1222	23	30	26	19	1.98
17669808--17670537	317	2.3	317	83	0	868	22	29	27	19	1.98
17671300--17671352	26	2.0	26	88	0	79	26	18	26	28	1.98
17672536--17672588	26	2.0	26	88	0	79	26	18	26	28	1.98
17673085--17673137	26	2.0	26	88	0	79	24	18	26	30	1.98
17672713--17673367	340	1.9	340	79	4	730	24	27	26	21	1.99
17673182--17673610	158	2.7	158	74	7	420	23	30	26	20	1.98
17673584--17673636	26	2.0	26	88	0	79	26	18	26	28	1.98
17673110--17674363	698	1.8	683	81	4	1537	23	27	26	21	1.99
17675006--17675055	26	1.9	26	88	8	75	32	20	22	26	1.98
17675506--17675558	26	2.0	26	85	0	70	26	18	26	28	1.98
17675899--17676394	158	3.2	154	74	9	450	24	30	25	19	1.99
17676368--17676420	26	2.0	26	88	0	79	32	18	22	26	1.97
17677970--17678022	26	2.0	26	85	7	72	30	18	22	28	1.98
17684725--17684777	26	2.0	26	89	7	81	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17686568--17686620	26	2.0	26	89	7	81	30	20	22	26	1.98
17686762--17686813	26	2.0	26	92	7	88	28	19	25	26	1.98
17687626--17687907	156	1.8	156	82	1	368	23	28	27	21	1.99
17688089--17688140	25	2.0	26	85	3	70	32	19	19	28	1.96
17690843--17690895	26	2.0	26	96	0	97	24	20	28	26	1.99
17697876--17697928	26	2.0	26	89	7	81	28	18	24	28	1.98
17697902--17698306	158	2.6	157	75	6	352	26	27	26	19	1.99
17698368--17698427	26	2.4	26	83	5	70	26	16	26	30	1.97
17698901--17699604	329	2.1	329	83	1	872	23	29	25	21	1.99
17699611--17700113	159	3.2	157	76	8	475	22	29	27	20	1.99
17700087--17700139	26	2.0	26	92	0	88	24	18	28	28	1.98
17700810--17700862	26	2.0	26	89	7	81	28	18	24	28	1.98
17700835--17701250	159	2.6	157	79	6	439	23	27	29	20	1.99
17701310--17701362	26	2.0	26	82	7	63	24	15	26	33	1.95
17702032--17702084	26	2.0	26	92	7	90	28	20	24	26	1.99
17702058--17702557	158	3.2	157	78	5	499	22	30	27	19	1.98
17702531--17702583	26	2.0	26	85	0	70	26	15	28	30	1.96
17703255--17703307	26	2.0	26	89	7	81	30	20	22	26	1.98
17703290--17703782	159	3.1	158	78	5	487	22	29	28	19	1.98
17704483--17704534	26	2.0	25	89	10	79	28	19	25	26	1.98
17704509--17705008	159	3.2	158	79	5	555	21	29	28	20	1.98
17704982--17705034	26	2.0	26	96	0	97	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17705642--17705694	26	2.0	26	92	7	90	28	20	24	26	1.99
17705669--17706105	159	2.8	158	78	4	452	26	30	25	17	1.97
17706522--17706574	26	2.0	26	85	7	72	28	20	22	28	1.99
17706547--17706968	159	2.7	159	77	5	433	25	31	25	17	1.97
17707024--17707076	26	2.0	26	88	0	79	26	18	26	28	1.98
17707744--17707796	26	2.0	26	85	7	72	28	20	22	28	1.99
17707769--17708190	159	2.7	159	77	5	433	25	31	25	17	1.97
17708247--17708299	26	2.0	26	88	0	79	26	18	26	28	1.98
17708966--17709018	26	2.0	26	85	7	72	28	20	22	28	1.99
17708992--17709333	158	2.2	157	84	3	429	23	29	26	21	1.99
17710013--17710065	26	2.0	26	92	0	88	28	18	24	28	1.98
17709854--17710419	196	3.0	183	78	9	584	24	28	26	21	1.99
17710209--17710261	26	2.0	26	92	7	90	28	20	24	26	1.99
17710235--17710535	158	1.9	158	80	6	351	26	29	24	19	1.98
17712083--17712137	26	2.1	26	89	0	83	32	21	21	23	1.98
17713109--17713449	158	2.2	155	78	8	352	21	31	28	18	1.97
17713423--17713474	26	2.0	26	92	7	88	26	19	26	26	1.99
17716877--17716934	14	3.9	15	80	10	75	32	44	22	0	1.53
17716875--17716939	19	3.8	19	68	31	65	33	43	23	0	1.54
17716880--17716969	30	3.0	30	93	0	144	31	41	24	3	1.71
17717650--17718031	193	2.0	192	94	3	678	36	12	15	35	1.85
17718746--17718793	1	48.0	1	78	0	51	89	6	4	0	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17718756--17718793	17	2.2	17	95	0	67	89	7	2	0	0.57
17720500--17720594	41	2.3	41	87	0	136	34	22	13	29	1.92
17720954--17721103	45	3.4	44	86	3	212	25	26	22	25	2.00
17720947--17721103	67	2.3	66	85	11	196	24	26	22	26	2.00
17720954--17721099	22	6.5	22	78	8	152	25	26	22	25	2.00
17721170--17721676	49	10.3	49	82	8	544	26	11	26	35	1.90
17721170--17721676	144	3.4	146	82	6	558	26	11	26	35	1.90
17721170--17721565	193	2.0	197	88	4	588	27	11	26	34	1.91
17721660--17721689	13	2.3	13	100	0	60	26	6	20	46	1.75
17722897--17722931	18	1.9	18	88	0	52	37	0	8	54	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138