genome.fa.s124.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  76  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13835241--13835293	26	2.0	26	85	7	72	28	20	18	32	1.97
13836072--13836480	159	2.6	157	79	6	398	18	27	29	24	1.98
13836453--13836505	26	2.0	26	85	7	72	28	22	18	30	1.98
13837487--13837539	26	2.0	26	89	7	81	26	22	20	30	1.98
13837198--13837709	196	2.6	195	82	4	584	20	23	29	26	1.99
13837804--13838194	158	2.5	158	82	3	484	18	25	30	24	1.98
13838168--13838220	26	2.0	26	89	7	81	28	24	18	28	1.98
13838549--13838601	26	2.0	26	88	0	79	28	26	18	26	1.98
13838268--13839154	356	2.5	357	81	5	991	18	26	30	24	1.98
13839405--13839457	26	2.0	26	89	7	81	28	24	18	28	1.98
13840128--13840180	26	2.0	26	85	0	70	32	24	16	26	1.97
13840300--13840352	26	2.0	26	85	7	72	30	20	16	32	1.95
13840362--13840407	21	2.2	21	96	0	83	26	23	36	13	1.91
13840378--13840886	171	3.0	168	81	5	526	21	27	29	22	1.98
13840859--13840911	26	2.0	26	96	0	97	26	24	20	28	1.99
13840991--13841389	159	2.5	160	79	7	438	19	27	28	24	1.98
13841361--13841413	26	2.0	26	85	7	72	30	24	16	28	1.97
13842084--13842136	26	2.0	26	88	0	79	24	28	20	26	1.99
13842268--13842320	26	2.0	26	92	7	90	26	24	20	28	1.99
13842461--13842512	26	2.0	26	96	0	95	26	28	19	25	1.98
13842451--13843180	232	3.3	229	66	21	599	23	25	24	26	2.00
13842696--13842748	26	2.0	26	89	7	81	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13842897--13842948	26	2.0	26	92	0	86	28	28	17	25	1.97
13842255--13843186	436	2.2	428	95	1	1648	23	25	25	25	2.00
13843132--13843184	26	2.0	26	89	7	81	28	24	18	28	1.98
13843336--13843766	159	2.7	158	76	5	429	20	27	28	23	1.99
13843738--13843790	26	2.0	26	89	7	81	28	24	18	28	1.98
13844447--13844498	26	2.0	26	85	3	70	28	25	19	26	1.98
13844947--13845005	26	2.3	26	80	11	70	30	23	16	28	1.97
13845614--13845666	26	2.0	26	92	7	90	26	24	20	28	1.99
13845811--13845863	26	2.0	26	88	0	79	28	26	18	26	1.98
13846514--13846566	26	2.0	26	92	7	90	30	20	16	32	1.95
13847238--13847296	26	2.3	26	83	11	70	33	28	13	23	1.93
13848118--13848170	26	2.0	26	88	0	79	26	24	20	28	1.99
13848144--13848646	159	3.2	158	73	8	457	20	26	28	24	1.99
13848620--13848672	26	2.0	26	88	0	79	26	22	18	32	1.97
13848828--13848894	26	2.6	26	95	0	125	29	23	17	28	1.97
13849197--13849249	26	2.0	26	92	7	90	30	24	16	28	1.97
13849319--13849350	11	2.9	11	90	0	55	28	21	28	21	1.99
13849914--13849966	26	2.0	26	85	7	72	24	24	20	30	1.99
13849123--13850562	716	2.0	709	85	5	1909	26	23	22	27	1.99
13851968--13852020	26	2.0	26	96	0	97	24	20	28	26	1.99
13852349--13852400	26	2.0	26	92	7	88	28	15	25	30	1.96
13852534--13852580	23	2.0	23	83	0	58	29	17	21	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13852887--13852939	26	2.0	26	85	0	70	28	18	24	28	1.98
13853268--13853319	26	2.0	26	85	7	70	28	17	23	30	1.97
13853735--13853787	26	2.0	26	89	7	81	28	20	24	26	1.99
13854134--13854487	183	1.9	183	82	5	448	25	28	25	20	1.99
13854785--13854835	26	2.0	26	88	0	75	25	23	23	27	2.00
13855154--13855206	26	2.0	26	89	7	81	30	20	22	26	1.98
13854994--13855364	185	2.0	185	85	1	494	24	29	25	20	1.99
13855534--13855898	158	2.3	158	76	6	362	24	29	24	21	1.99
13856009--13856061	26	2.0	26	88	0	79	28	18	26	26	1.98
13856228--13856518	157	1.9	157	82	4	372	25	30	24	18	1.98
13856195--13856550	157	2.3	157	75	5	344	24	29	25	19	1.99
13856214--13856787	315	1.8	314	81	4	708	25	29	26	18	1.98
13857399--13857451	26	2.0	26	89	7	81	28	18	24	28	1.98
13857951--13858003	26	2.0	26	85	0	70	32	16	22	28	1.96
13858454--13858506	26	2.0	26	85	0	70	28	18	24	28	1.98
13858136--13858957	355	2.3	349	79	8	810	23	29	26	20	1.99
13858821--13858873	26	2.0	26	85	7	72	32	22	20	24	1.98
13858843--13859348	159	3.2	156	76	6	498	22	30	27	19	1.98
13859323--13859374	26	2.0	26	84	0	68	26	15	26	30	1.96
13859956--13859987	11	2.9	11	100	0	64	18	25	37	18	1.94
13860055--13860105	26	2.0	26	88	7	77	33	17	19	29	1.95
13860398--13860450	26	2.0	26	85	7	72	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13860817--13860869	26	2.0	26	92	0	88	24	18	28	28	1.98
13861013--13861062	26	1.9	26	88	8	75	30	18	24	28	1.97
13862545--13862597	26	2.0	26	92	7	90	28	20	24	26	1.99
13862570--13862985	159	2.6	158	74	7	385	24	27	28	19	1.99
13863151--13863203	26	2.0	26	88	0	79	28	24	24	22	2.00
13863387--13863438	26	2.0	26	96	0	95	25	19	28	26	1.98
13863579--13863631	26	2.0	26	92	7	90	28	20	24	26	1.99
13863387--13863843	196	2.4	196	80	9	485	24	27	27	20	1.99
13864514--13865017	159	3.2	159	77	4	453	23	28	27	20	1.99
13864991--13865043	26	2.0	26	88	0	79	26	18	26	28	1.98
13865073--13865521	170	2.6	167	80	4	495	20	31	27	20	1.98
13865528--13865580	26	2.0	26	89	7	81	30	18	22	28	1.98
13866447--13866914	158	3.0	156	73	5	413	23	29	27	20	1.98
13866921--13866973	26	2.0	26	92	0	88	26	20	26	26	1.99
13867783--13867835	26	2.0	26	88	0	79	24	18	26	30	1.98
13868190--13868633	159	2.8	159	79	4	468	23	29	27	19	1.98
13868663--13868715	26	2.0	26	92	0	88	24	18	28	28	1.98
13866425--13869557	867	3.6	867	81	4	3338	23	28	26	20	1.99
13869170--13869875	317	2.2	317	82	2	806	24	30	25	20	1.99
13869054--13869809	159	4.8	158	76	4	574	24	29	26	19	1.99
13869055--13869875	158	5.2	160	75	3	584	24	29	25	20	1.99
13870555--13870607	26	2.0	26	89	7	81	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13870580--13871075	158	3.1	153	78	7	483	23	29	26	19	1.99
13871056--13871108	26	2.0	26	92	0	88	28	18	22	30	1.98
13870858--13871732	356	2.4	361	79	6	966	23	30	27	18	1.98
13871793--13871845	26	2.0	26	92	7	90	28	20	24	26	1.99
13871819--13872211	158	2.5	157	81	2	466	25	29	25	20	1.99
13872477--13872529	26	2.0	26	89	7	81	30	20	22	26	1.98
13872305--13872831	196	2.7	196	83	4	609	25	29	24	20	1.99
13873504--13873989	159	3.1	158	75	5	487	22	29	27	20	1.99
13874688--13874740	26	2.0	26	85	7	72	30	18	20	30	1.97
13874872--13874924	26	2.0	26	88	0	79	26	18	26	28	1.98
13876030--13876082	26	2.0	26	85	7	72	28	24	20	26	1.99
13876056--13876550	160	3.1	157	73	7	451	18	26	30	24	1.98
13877913--13877963	26	2.0	24	88	7	75	25	17	21	35	1.95
13878637--13879120	158	3.1	158	77	3	526	18	27	30	22	1.97
13879103--13879207	26	4.0	26	74	9	99	25	25	20	28	1.99
13879181--13879999	158	5.2	157	74	6	632	19	26	30	23	1.98
13878621--13879676	553	1.9	552	84	2	1415	19	26	29	23	1.98
13879192--13880040	317	2.7	315	82	2	1018	19	26	30	23	1.98
13880130--13880184	26	2.1	26	96	0	101	21	21	41	14	1.89
13880469--13880521	26	2.0	26	88	0	79	30	24	16	28	1.97
13880950--13881002	26	2.0	26	96	0	97	28	26	18	26	1.98
13882437--13882872	185	2.4	184	81	3	477	21	26	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13882662--13882714	26	2.0	26	89	7	81	28	24	20	26	1.99
13883007--13883056	26	1.9	26	92	8	84	24	26	20	30	1.98
13882060--13883213	527	2.2	527	86	1	1571	19	26	28	24	1.99
13883756--13883808	26	2.0	26	85	7	72	26	24	18	30	1.98
13885540--13885592	26	2.0	26	92	0	88	26	26	20	26	1.99
13886738--13887130	160	2.5	160	77	4	411	17	27	30	24	1.98
13887487--13887539	26	2.0	26	85	0	70	32	22	16	28	1.96
13887652--13888015	158	2.3	159	78	4	376	20	26	29	23	1.99
13887987--13888039	26	2.0	26	85	7	72	28	22	18	30	1.98
13888243--13888552	158	2.0	156	81	6	365	16	26	33	23	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138