genome.fa.s124.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  120  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17327963--17328015	26	2.0	26	92	0	88	28	18	24	28	1.98
17328626--17328695	26	2.7	26	97	0	131	32	17	25	24	1.96
17329451--17329502	25	2.0	26	92	3	88	26	21	25	26	1.99
17330183--17330235	26	2.0	26	92	0	88	28	18	24	28	1.98
17338111--17338163	26	2.0	26	89	7	81	28	18	24	28	1.98
17338137--17338628	158	3.1	156	73	8	449	22	29	27	20	1.99
17338806--17339166	183	2.0	184	83	1	465	25	28	24	21	1.99
17340183--17340235	26	2.0	26	89	7	81	26	20	26	26	1.99
17340527--17340578	25	2.0	25	81	3	59	28	13	28	28	1.94
17340919--17341335	159	2.6	156	77	9	393	23	29	29	18	1.98
17342115--17342167	26	2.0	26	89	7	81	26	18	26	28	1.98
17342616--17342717	26	3.9	26	81	2	125	27	17	25	29	1.98
17342620--17342723	52	2.0	52	84	3	138	28	19	24	27	1.98
17343705--17343757	26	2.0	26	89	7	81	28	18	24	28	1.98
17344026--17344336	159	2.0	157	87	5	457	22	32	28	17	1.96
17343729--17344359	158	4.0	157	77	6	436	23	30	27	18	1.98
17343729--17344391	159	4.2	158	76	7	429	23	29	26	19	1.98
17344366--17344418	26	2.0	26	85	0	70	28	15	24	32	1.95
17344376--17345062	367	1.9	364	79	7	793	24	29	25	20	1.99
17344562--17344955	196	2.0	196	80	4	447	25	28	24	22	1.99
17344929--17345429	159	3.2	157	75	8	390	23	29	27	19	1.98
17345403--17345455	26	2.0	26	96	0	97	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17346623--17346675	26	2.0	26	85	7	72	28	20	24	26	1.99
17346816--17347406	159	3.7	159	75	9	540	23	29	27	19	1.98
17348745--17348795	26	2.0	26	88	7	77	29	19	21	29	1.98
17348743--17349085	185	1.9	185	80	2	411	24	27	25	22	2.00
17348771--17349452	367	1.9	356	79	6	771	24	28	26	20	1.99
17349332--17349824	159	3.1	159	73	10	357	23	31	26	18	1.98
17349798--17349876	26	3.0	25	90	3	122	26	20	26	26	1.99
17350150--17350181	12	2.7	12	100	0	64	9	25	25	40	1.85
17350230--17350604	159	2.4	159	78	7	359	24	28	26	20	1.99
17349997--17351193	514	2.3	514	81	3	1267	24	29	25	20	1.99
17350902--17351239	159	2.1	158	80	4	367	25	30	24	19	1.98
17351219--17351271	26	2.0	26	88	0	79	30	22	22	24	1.99
17351931--17351983	26	2.0	26	89	7	81	32	20	20	26	1.98
17352310--17352362	26	2.0	26	85	7	72	28	20	24	26	1.99
17353332--17353384	26	2.0	26	89	7	81	26	18	26	28	1.98
17354066--17354117	26	2.0	25	92	3	86	30	21	21	26	1.98
17354408--17354460	26	2.0	26	96	0	97	28	20	24	26	1.99
17354618--17354670	26	2.0	26	85	7	72	26	20	24	28	1.99
17354802--17354854	26	2.0	26	96	0	97	28	20	24	26	1.99
17354249--17355220	394	2.5	392	86	2	1304	25	29	24	21	1.99
17356589--17356621	12	2.8	12	100	0	66	42	18	27	12	1.85
17357767--17357819	26	2.0	26	92	0	88	24	15	28	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17358485--17358537	26	2.0	26	85	0	70	32	18	22	26	1.97
17363786--17363838	26	2.0	26	88	0	79	26	15	26	32	1.95
17364663--17365197	196	2.7	193	82	4	624	25	28	25	20	1.99
17365030--17365082	26	2.0	26	85	7	72	26	18	26	28	1.98
17365173--17365224	24	2.2	24	89	0	77	7	30	25	36	1.84
17364977--17365420	219	2.0	220	80	2	489	22	28	25	23	2.00
17365446--17365498	26	2.0	26	92	7	90	28	20	24	26	1.99
17365575--17365660	42	2.0	42	97	0	163	11	44	22	22	1.84
17366521--17366571	26	2.0	26	84	7	68	27	17	25	29	1.98
17366705--17366757	26	2.0	26	85	0	70	24	20	24	30	1.99
17366856--17367184	171	1.9	171	85	2	446	23	28	27	20	1.99
17367268--17367770	158	3.2	160	75	7	472	23	29	26	20	1.99
17367941--17367993	26	2.0	26	85	7	72	32	20	20	26	1.98
17368858--17369360	159	3.2	159	75	5	374	23	30	27	19	1.98
17369335--17369386	25	2.0	25	85	3	68	28	19	25	26	1.98
17369700--17369752	26	2.0	26	89	7	81	28	18	24	28	1.98
17370201--17370253	26	2.0	26	92	0	88	24	15	28	32	1.95
17370897--17370949	26	2.0	26	88	0	79	24	20	28	26	1.99
17370851--17371249	195	2.0	197	83	2	509	21	29	27	21	1.98
17371118--17371527	159	2.6	159	78	5	429	24	29	28	18	1.98
17371459--17371587	58	2.2	58	80	0	141	31	24	31	13	1.93
17372563--17372615	26	2.0	26	92	0	88	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17372404--17372847	184	2.3	188	80	8	497	24	28	26	20	1.99
17372759--17372811	26	2.0	26	89	7	81	30	20	22	26	1.98
17373260--17373312	26	2.0	26	92	0	88	24	18	28	28	1.98
17373982--17374034	26	2.0	26	85	7	72	30	18	24	26	1.98
17374324--17374376	26	2.0	26	85	0	70	28	16	26	28	1.97
17374534--17374589	26	2.2	26	87	6	78	30	17	19	32	1.95
17375035--17375087	26	2.0	26	92	0	88	24	22	26	26	2.00
17375371--17375754	196	2.0	195	80	8	440	22	27	27	22	1.99
17376112--17376178	26	2.6	26	85	0	89	26	14	22	35	1.93
17377930--17377982	26	2.0	26	92	0	88	26	20	26	26	1.99
17378581--17378632	26	2.0	26	84	0	68	28	17	26	26	1.97
17378396--17378869	209	2.3	209	82	2	585	26	26	24	22	2.00
17378814--17379311	159	3.2	156	77	7	454	24	28	26	20	1.99
17380343--17380392	26	1.9	26	88	8	75	28	20	26	26	1.99
17381505--17381557	26	2.0	26	92	7	90	28	20	24	26	1.99
17382005--17382057	26	2.0	26	92	0	88	24	18	28	28	1.98
17382944--17383000	26	2.2	25	78	3	60	21	5	12	61	1.50
17383411--17383463	26	2.0	26	89	7	81	30	20	22	26	1.98
17384635--17384687	26	2.0	26	89	7	81	30	20	22	26	1.98
17385501--17385855	159	2.2	158	84	1	451	25	31	24	18	1.98
17385966--17386018	26	2.0	26	92	0	88	24	20	26	28	1.99
17386679--17386729	26	2.0	26	88	0	75	27	17	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17388029--17388327	158	1.9	158	80	1	357	23	28	29	18	1.98
17388385--17388437	26	2.0	26	88	0	79	24	18	26	30	1.98
17387527--17388508	511	1.9	513	82	4	1248	23	27	27	21	1.99
17389608--17389660	26	2.0	26	96	0	97	24	20	28	26	1.99
17389634--17389941	171	1.8	171	83	1	411	19	31	28	20	1.97
17389765--17390062	159	1.9	159	82	1	382	21	30	29	19	1.97
17390122--17390172	26	2.0	26	92	0	84	27	13	25	33	1.94
17390846--17390896	26	2.0	26	84	7	68	29	17	25	27	1.98
17391029--17391081	26	2.0	26	92	0	88	24	18	28	28	1.98
17390117--17392725	907	2.9	890	86	4	3473	26	22	23	27	2.00
17391752--17391804	26	2.0	26	89	7	81	30	18	22	28	1.98
17393138--17393190	26	2.0	26	82	13	65	26	16	24	32	1.97
17394020--17394072	26	2.0	26	89	7	81	26	18	26	28	1.98
17394201--17394491	159	1.8	159	84	0	393	23	30	28	18	1.98
17394546--17394598	26	2.0	26	92	7	90	24	22	26	26	2.00
17395267--17395319	26	2.0	26	89	7	81	30	20	22	26	1.98
17395767--17395819	26	2.0	26	85	7	72	24	15	28	32	1.95
17395977--17396472	155	3.2	151	72	8	377	22	28	27	20	1.99
17396446--17396498	26	2.0	26	88	0	79	26	18	26	28	1.98
17396572--17396596	12	2.1	12	100	0	50	8	40	24	28	1.83
17396620--17396917	158	1.9	158	85	1	409	25	29	27	17	1.98
17396953--17397005	26	2.0	26	92	7	90	28	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17396981--17397271	158	1.8	158	82	2	370	23	28	28	18	1.98
17396624--17397608	354	2.8	352	86	2	1278	24	28	26	19	1.99
17397307--17397359	26	2.0	26	92	7	90	28	20	24	26	1.99
17397332--17397832	158	3.2	154	74	8	447	24	29	26	19	1.99
17397806--17397856	26	2.0	26	88	0	75	27	19	23	29	1.98
17398526--17398578	26	2.0	26	89	7	81	30	20	22	26	1.98
17399026--17399078	26	2.0	26	96	0	97	24	20	28	26	1.99
17400262--17400314	26	2.0	26	89	7	81	30	20	22	26	1.98
17400287--17400717	159	2.7	158	75	4	420	24	29	26	19	1.98
17400756--17400814	26	2.3	26	85	5	77	27	13	27	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138