genome.fa.s124.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  91  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14974323--14974375	26	2.0	26	88	0	79	24	13	28	33	1.93
14974532--14974587	26	2.2	26	87	6	78	30	17	21	30	1.96
14975456--14975508	26	2.0	26	92	0	88	26	18	28	26	1.98
14975652--14975703	26	2.0	25	96	3	95	28	17	23	30	1.97
14974708--14976250	691	2.2	700	83	3	1858	24	28	26	21	1.99
14976148--14976197	26	1.9	26	91	0	82	30	14	28	28	1.95
14976514--14976566	26	2.0	26	96	0	97	24	20	28	26	1.99
14976904--14977318	158	2.6	157	75	6	370	27	27	25	20	1.99
14978126--14978627	158	3.2	156	75	8	494	23	29	27	19	1.98
14978601--14978653	26	2.0	26	88	0	79	26	18	26	28	1.98
14980376--14980706	171	1.9	170	83	6	420	25	30	25	19	1.98
14980376--14980779	170	2.4	168	78	9	408	24	30	24	20	1.99
14981253--14981305	26	2.0	26	92	0	88	24	15	28	32	1.95
14982543--14982946	159	2.6	158	78	5	438	24	29	27	18	1.98
14983015--14983067	26	2.0	26	96	0	97	28	16	24	30	1.97
14983895--14983947	26	2.0	26	85	0	70	30	16	24	28	1.97
14984628--14984680	26	2.0	26	85	7	72	32	18	20	28	1.97
14986388--14986440	26	2.0	26	85	7	72	30	18	22	28	1.98
14987336--14987688	185	1.9	185	82	2	440	25	30	25	18	1.98
14987826--14987878	26	2.0	26	88	0	79	28	20	24	26	1.99
14987288--14987974	343	2.0	344	83	2	869	24	29	26	19	1.99
14987824--14988158	185	1.8	185	85	5	471	25	26	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14987773--14988216	185	2.4	183	78	7	468	22	28	25	22	1.99
14987851--14988478	342	1.8	343	82	4	800	23	27	28	19	1.99
14989588--14989952	158	2.3	158	79	6	380	26	28	25	19	1.99
14989665--14989952	159	1.8	158	80	6	350	25	29	25	20	1.99
14990070--14990122	26	2.0	26	85	0	70	28	18	24	28	1.98
14990704--14991277	158	3.6	157	80	4	595	22	30	28	17	1.97
14990637--14991343	316	2.2	313	84	2	864	21	30	27	19	1.98
14991326--14991405	26	3.1	26	83	7	108	27	21	25	26	1.99
14991378--14991867	158	3.1	157	80	2	570	21	28	29	20	1.98
14991849--14991901	26	2.0	26	88	0	79	26	15	26	32	1.95
14993609--14993641	11	3.0	11	83	16	50	18	36	27	18	1.94
14994210--14994262	26	2.0	26	89	7	81	26	18	26	28	1.98
14995190--14995554	158	2.3	158	79	6	405	21	30	29	18	1.97
14994966--14995554	317	1.9	317	78	4	659	23	29	28	19	1.98
14995251--14995579	159	2.1	158	82	6	398	22	30	27	19	1.98
14995592--14995644	26	2.0	26	85	7	72	24	15	28	32	1.95
14995960--14996011	26	2.0	26	85	7	70	28	17	26	26	1.97
14995859--14996310	197	2.3	196	82	2	514	25	30	24	19	1.98
14996156--14996205	26	1.9	26	88	8	75	36	20	18	26	1.95
14996658--14996710	26	2.0	26	92	7	90	26	16	26	30	1.97
15003829--15003881	26	2.0	26	92	0	88	26	20	26	26	1.99
15004549--15004601	26	2.0	26	92	7	90	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15004038--15005189	524	2.2	530	83	3	1455	23	28	27	21	1.99
15004038--15005230	525	2.2	530	82	4	1476	22	28	27	21	1.99
15004903--15005359	196	2.3	196	82	4	539	23	26	26	22	2.00
15005650--15005702	26	2.0	26	89	7	81	28	18	24	28	1.98
15005675--15006283	159	3.8	157	74	5	481	23	30	27	18	1.97
15008608--15008659	26	2.0	26	92	0	86	25	17	28	28	1.97
15008802--15008854	26	2.0	26	96	0	97	24	20	28	26	1.99
15009159--15009263	26	4.0	26	92	2	167	33	19	20	27	1.96
15009896--15009945	26	1.9	26	92	8	84	30	20	24	26	1.98
15011044--15011096	26	2.0	26	88	0	79	26	18	26	28	1.98
15011755--15011807	26	2.0	26	92	0	88	24	18	28	28	1.98
15011705--15012153	188	2.4	182	80	6	524	24	29	24	21	1.99
15012446--15012497	26	2.0	26	88	0	77	26	17	26	28	1.97
15012643--15013009	184	2.0	184	81	4	427	25	27	24	22	2.00
15014022--15014074	26	2.0	26	89	7	81	28	18	24	28	1.98
15014897--15015418	196	2.7	196	91	2	798	24	27	26	22	2.00
15016087--15016139	26	2.0	26	92	7	90	28	20	24	26	1.99
15016272--15016324	26	2.0	26	86	13	74	30	16	22	30	1.96
15015922--15016812	381	2.3	387	81	6	990	24	27	25	21	1.99
15016266--15016741	196	2.4	195	81	6	518	25	26	24	23	2.00
15016664--15016716	26	2.0	26	92	7	90	30	20	22	26	1.98
15016085--15016801	392	1.9	377	82	8	858	24	27	25	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15017007--15017059	26	2.0	26	96	0	97	24	20	28	26	1.99
15018278--15018741	171	2.8	169	77	10	479	23	31	26	19	1.98
15018409--15018720	158	2.0	159	85	0	428	25	30	25	18	1.98
15019993--15020045	26	2.0	26	92	7	90	28	20	24	26	1.99
15020494--15020546	26	2.0	26	85	0	70	30	20	22	26	1.98
15022247--15022517	145	1.9	147	81	3	341	19	28	28	24	1.98
15022567--15022598	12	2.8	12	95	4	57	34	21	34	9	1.86
15022864--15022915	25	2.0	26	88	3	79	30	23	21	25	1.99
15024141--15024193	26	2.0	26	88	0	79	26	26	18	28	1.98
15024167--15024666	159	3.2	156	78	4	504	20	26	29	23	1.99
15033642--15033694	26	2.0	26	85	7	72	30	18	18	32	1.96
15033492--15034048	195	3.0	182	79	9	598	19	25	30	24	1.98
15033863--15034238	159	2.4	158	77	5	400	19	25	31	23	1.98
15033863--15034364	158	3.2	160	76	6	520	18	25	31	24	1.98
15034338--15034390	26	2.0	26	92	7	90	26	24	20	28	1.99
15034465--15034496	11	2.9	11	100	0	64	25	37	28	9	1.87
15035645--15036114	171	2.8	171	85	2	606	19	26	30	22	1.98
15036108--15036160	26	2.0	26	85	0	70	32	30	15	22	1.94
15037331--15037383	26	2.0	26	92	0	88	28	28	18	24	1.98
15037674--15037726	26	2.0	26	89	7	81	28	22	18	30	1.98
15037649--15038468	196	4.2	195	77	8	739	22	24	28	25	1.99
15038066--15038118	26	2.0	26	86	13	74	30	22	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15037649--15038468	381	2.1	385	81	6	928	22	24	28	25	1.99
15038251--15038303	26	2.0	26	92	7	90	26	24	20	28	1.99
15039581--15039632	25	2.0	25	85	10	70	28	23	17	30	1.97
15040119--15040171	26	2.0	26	92	7	90	26	24	20	28	1.99
15041695--15041746	26	2.0	26	84	0	68	28	25	17	28	1.97
15042379--15042431	26	2.0	26	96	0	97	26	28	20	24	1.99
15042038--15042590	184	3.0	182	77	3	572	20	24	28	26	1.99
15042405--15042768	159	2.3	157	78	6	376	20	25	31	23	1.98
15042880--15042932	26	2.0	26	89	7	81	28	22	18	30	1.98
15044245--15044294	26	1.9	26	92	8	84	26	24	20	30	1.98
15044927--15045031	26	4.0	26	92	2	158	27	19	19	34	1.95
15045336--15045388	26	2.0	26	96	0	97	26	28	20	24	1.99
15045313--15045672	196	1.8	197	87	1	535	21	26	26	25	1.99
15045532--15045583	26	2.0	26	92	0	86	28	28	17	25	1.97
15046032--15046084	26	2.0	26	82	7	63	28	22	18	30	1.98
15047911--15048457	159	3.4	155	72	7	398	18	27	32	22	1.97
15047913--15048514	318	1.9	318	80	2	717	18	27	31	23	1.97
15048497--15048549	26	2.0	26	89	7	81	28	26	18	26	1.98
15048841--15049294	195	2.3	196	84	3	558	22	26	26	24	2.00
15049100--15049498	171	2.3	168	77	5	408	21	26	29	22	1.99
15049598--15049650	26	2.0	26	92	7	90	26	24	20	28	1.99
15050807--15050859	26	2.0	26	89	7	81	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15051638--15051690	26	2.0	26	89	7	81	26	26	20	26	1.99
15050200--15051867	831	2.0	831	98	0	3246	19	25	31	22	1.98
15058290--15058342	26	2.0	26	92	7	90	30	26	16	26	1.97
15058795--15058843	26	1.9	25	87	4	71	26	16	20	36	1.93
15058991--15059042	26	2.0	26	85	7	70	26	26	17	28	1.97
15058756--15059215	197	2.3	197	80	7	486	20	25	28	26	1.99
15059508--15060041	159	3.4	157	76	8	492	18	27	30	23	1.98
15061879--15061930	26	2.0	25	96	3	95	28	21	23	26	1.99
15061903--15062333	153	2.8	156	78	7	450	24	30	27	17	1.97
15061903--15062397	159	3.2	155	76	7	436	23	30	26	18	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138