genome.fa.s124.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  53  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11110909--11110948	19	2.1	19	90	4	62	47	0	12	40	1.41
11110962--11111081	32	3.8	31	84	5	152	37	0	8	53	1.37
11110962--11111081	63	1.9	63	86	3	170	37	0	8	53	1.37
11111121--11111165	19	2.3	20	85	11	58	48	6	4	40	1.49
11111236--11111275	18	2.2	18	86	0	53	12	2	0	85	0.71
11111253--11111277	8	3.1	8	100	0	50	12	0	0	88	0.53
11111272--11111301	14	2.1	14	93	0	51	43	0	3	53	1.17
11111954--11112001	21	2.2	21	88	3	69	45	0	8	45	1.33
11111995--11112049	22	2.5	22	82	8	58	25	7	16	50	1.70
11112000--11112061	23	2.9	22	79	9	65	29	6	14	50	1.68
11116373--11116434	21	3.0	20	75	13	63	50	0	16	33	1.45
11116348--11116434	20	4.2	21	69	24	58	45	3	14	35	1.62
11119343--11119368	2	13.0	2	100	0	52	50	0	0	50	1.00
11122806--11122902	22	4.4	22	81	0	104	35	10	10	44	1.73
11122806--11122926	44	2.8	44	82	6	131	35	9	10	44	1.71
11122844--11122917	22	3.4	21	88	3	103	36	8	9	45	1.66
11122987--11123042	22	2.5	22	82	5	60	41	10	5	42	1.62
11123189--11123271	22	3.8	22	82	3	96	32	7	6	54	1.52
11123189--11123286	22	4.5	21	80	5	88	30	8	6	55	1.54
11123208--11123345	22	6.3	21	69	15	57	31	7	7	52	1.60
11123869--11124106	22	10.8	22	73	8	124	39	7	7	45	1.62
11123984--11124126	44	3.2	44	79	4	128	39	4	8	47	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11124056--11124131	22	3.5	21	70	13	64	42	5	6	46	1.52
11124124--11124750	22	28.8	22	70	10	97	37	10	6	46	1.63
11124134--11124750	44	14.2	44	71	12	202	37	10	6	46	1.63
11124154--11124291	66	2.1	66	82	2	170	36	8	7	47	1.62
11124329--11124750	195	2.2	194	90	3	679	38	10	6	45	1.64
11124360--11124723	65	5.6	65	73	11	273	37	9	7	45	1.64
11124268--11125001	22	33.7	22	69	12	246	38	9	5	45	1.61
11124983--11125066	44	1.9	43	85	7	116	33	5	9	51	1.59
11126096--11126148	12	4.5	12	81	9	56	13	28	0	58	1.35
11126097--11126140	23	1.9	23	90	9	72	11	27	0	61	1.30
11126098--11126147	23	2.2	23	85	7	66	12	28	0	60	1.32
11126328--11126363	13	2.6	14	91	8	56	16	2	0	80	0.83
11127614--11127656	21	2.0	21	82	17	52	25	4	6	62	1.40
11127642--11127677	4	8.5	4	93	3	54	22	2	0	75	0.94
11127642--11127683	12	3.1	14	86	13	54	23	2	0	73	0.94
11127778--11127823	24	1.9	24	86	0	65	8	0	43	47	1.34
11130662--11130703	17	2.5	17	96	0	75	47	2	0	50	1.14
11131955--11131984	15	1.9	16	93	6	53	26	10	0	63	1.26
11137141--11137192	22	2.4	22	81	9	63	48	1	1	48	1.24
11137900--11137946	9	5.2	9	89	0	67	51	6	0	42	1.27
11137961--11138019	9	6.6	9	75	12	50	69	8	1	20	1.23
11137961--11138039	19	4.2	19	68	19	58	68	6	2	22	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11137961--11138038	37	2.1	36	86	6	104	67	6	2	23	1.26
11138164--11138207	20	2.0	20	83	12	52	54	2	4	38	1.33
11138488--11138542	10	5.6	10	78	4	58	21	1	10	65	1.33
11138493--11138556	20	3.3	19	84	6	67	25	1	9	64	1.33
11138495--11138556	19	3.2	18	82	11	54	24	1	9	64	1.33
11139680--11139713	12	2.8	12	90	0	50	17	0	32	50	1.47
11141244--11141270	10	2.7	10	100	0	54	59	11	0	29	1.32
11147009--11147045	17	2.2	17	100	0	74	24	32	10	32	1.90
11156908--11157130	116	1.9	116	88	3	333	28	18	23	29	1.98
11158018--11158060	23	2.0	21	82	17	52	16	13	4	65	1.43
11159314--11159356	21	2.0	21	100	0	86	37	4	13	44	1.65
11162506--11162539	16	2.1	16	94	0	59	47	11	8	32	1.71
11164595--11164620	2	13.0	2	100	0	52	50	0	0	50	1.00
11169998--11170047	23	2.2	23	100	0	100	58	24	4	14	1.53
11170948--11170973	13	2.0	13	100	0	52	46	7	15	30	1.74
11171823--11171864	6	7.2	6	89	5	59	30	0	4	64	1.14
11171824--11171856	17	1.9	17	93	0	57	27	0	6	66	1.15
11173516--11173600	44	1.9	44	92	0	143	29	2	14	54	1.52
11173588--11173709	19	5.9	19	70	24	70	27	5	16	50	1.68
11176233--11176294	31	2.0	31	90	0	97	24	3	24	48	1.66
11176556--11176631	39	1.9	39	82	15	95	25	3	3	67	1.25
11181399--11182037	119	5.4	119	74	5	353	19	24	14	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11181758--11182093	119	2.8	119	81	4	322	17	25	15	41	1.89
11182063--11182199	61	2.2	61	86	0	202	19	25	14	40	1.90
11182184--11182257	37	2.0	37	86	0	103	21	24	9	44	1.82
11183296--11183356	13	4.9	12	76	13	61	18	3	1	77	0.99
11183289--11183356	25	2.8	24	81	14	77	17	4	1	76	1.03
11183290--11183356	30	2.2	31	86	10	93	17	4	1	76	1.04
11183653--11183677	4	6.2	4	100	0	50	76	0	0	24	0.80
11185386--11185505	63	1.9	62	88	5	179	31	6	5	55	1.49
11185978--11186033	26	2.2	26	84	12	73	41	8	3	46	1.52
11187091--11187151	4	15.8	4	76	6	63	68	0	8	22	1.15
11187100--11187151	19	2.7	19	90	0	77	67	0	9	23	1.20
11187445--11187834	81	4.7	81	76	10	331	42	17	13	26	1.86
11187445--11187790	41	8.3	40	75	11	270	42	17	13	26	1.86
11187382--11188020	43	15.0	43	78	7	460	42	18	13	25	1.87
11187451--11188011	175	3.3	174	80	7	591	42	18	13	25	1.87
11188235--11188274	21	1.9	21	94	0	71	25	12	20	42	1.86
11188588--11188671	21	4.0	21	84	3	114	35	15	9	39	1.80
11188586--11188671	43	2.0	43	93	0	145	36	15	9	39	1.79
11189829--11189871	8	5.5	8	88	2	61	18	2	2	76	1.00
11189815--11189892	8	10.2	8	77	14	51	14	7	1	76	1.05
11189879--11189917	10	3.9	10	86	0	51	5	12	0	82	0.83
11189818--11189914	16	5.9	15	71	20	54	11	8	1	79	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11189815--11189911	27	3.8	26	75	9	76	11	9	1	78	1.02
11190274--11190336	31	2.0	32	81	3	74	11	11	3	74	1.18
11196273--11196308	15	2.4	15	90	0	54	22	11	0	66	1.22
11198282--11198320	16	2.4	16	86	4	51	20	5	5	69	1.28
11200471--11200732	57	4.5	56	81	10	289	35	12	7	43	1.71
11200471--11200766	59	5.1	57	79	12	282	36	11	7	44	1.70
11200762--11200825	5	12.8	5	75	21	55	81	0	3	15	0.82
11200767--11200825	14	4.7	13	82	14	63	81	0	3	15	0.82
11200763--11200826	34	1.9	33	90	9	103	81	0	3	15	0.82
11200762--11200826	25	2.9	22	78	14	78	81	0	3	15	0.81
11200846--11200886	18	2.2	19	87	12	59	65	2	0	31	1.05
11201663--11201728	18	3.6	17	78	8	60	62	4	4	28	1.35
11201706--11201770	24	2.8	23	78	17	80	61	6	4	27	1.40
11201832--11201863	7	4.9	7	85	14	50	75	0	0	25	0.81
11201837--11201863	12	2.2	12	100	0	54	74	0	0	25	0.83
11201817--11201873	19	2.9	19	86	2	69	73	1	5	19	1.11
11202069--11202467	42	9.4	42	81	9	425	39	20	15	24	1.92
11202131--11202454	173	1.9	171	89	5	499	39	19	16	24	1.91
11202075--11202467	215	1.8	214	85	4	558	39	20	15	24	1.91
11202453--11202582	41	3.1	41	79	5	145	37	17	16	27	1.92
11202069--11202493	127	3.3	125	82	9	405	39	20	15	24	1.92
11202480--11202582	41	2.5	41	91	0	161	38	12	18	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11204465--11204522	13	4.6	13	77	18	61	3	15	0	81	0.83
11204465--11204525	23	2.6	24	87	10	90	3	14	0	81	0.80
11204475--11204535	15	4.0	15	78	6	61	4	14	0	80	0.87
11204446--11204534	32	2.7	32	78	13	92	6	13	0	79	0.91
11208514--11208603	27	3.2	27	66	17	74	37	14	5	42	1.69
11208455--11208611	58	2.7	60	84	6	214	35	13	6	45	1.69
11208453--11208634	59	3.1	58	80	11	203	36	11	6	45	1.67
11208630--11208697	5	13.8	5	77	14	63	80	0	2	16	0.82
11208629--11208698	6	11.8	6	82	8	74	81	0	2	15	0.81
11208630--11208698	13	4.8	13	72	27	59	81	0	2	15	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138