genome.fa.s124.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  75  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13753558--13753958	159	2.5	159	76	9	361	18	26	28	26	1.98
13754061--13754093	11	3.0	11	95	0	57	27	33	27	12	1.92
13760585--13760637	26	2.0	26	88	0	79	30	28	16	24	1.97
13760611--13761269	159	4.2	158	81	3	709	19	28	29	22	1.98
13760611--13762113	317	4.6	316	72	13	933	19	28	30	22	1.98
13761511--13762113	158	3.8	156	78	6	509	18	27	31	22	1.97
13761593--13762113	158	3.3	156	80	4	512	18	26	31	23	1.97
13763692--13763744	26	2.0	26	85	7	72	30	24	16	28	1.97
13764653--13764692	21	1.9	21	94	0	71	30	27	40	2	1.70
13764894--13764946	26	2.0	26	89	7	81	30	26	16	26	1.97
13765614--13765666	26	2.0	26	92	0	88	28	28	18	24	1.98
13766278--13766330	26	2.0	26	92	0	88	26	26	20	26	1.99
13766304--13766804	158	3.2	157	74	6	393	19	26	30	23	1.98
13765448--13766782	664	2.0	664	88	1	1989	20	25	28	24	1.99
13766670--13767197	196	2.7	195	85	1	700	20	25	30	23	1.98
13768246--13768298	26	2.0	26	92	0	88	26	26	20	26	1.99
13768374--13769094	317	2.3	318	81	3	819	20	27	28	23	1.99
13768328--13769094	159	4.8	159	73	6	450	20	27	28	23	1.99
13768565--13769093	159	3.3	158	75	7	498	20	26	28	24	1.99
13769067--13769119	26	2.0	26	89	7	81	24	24	22	28	2.00
13775272--13775633	185	2.0	184	81	8	423	22	27	27	23	1.99
13775817--13776179	160	2.3	159	77	5	392	19	25	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13776489--13776541	26	2.0	26	89	7	81	28	22	20	28	1.99
13778357--13778409	26	2.0	26	89	7	81	28	24	18	28	1.98
13779078--13779130	26	2.0	26	88	0	79	26	24	22	26	2.00
13779035--13779729	345	2.0	350	80	7	786	20	27	29	22	1.98
13779578--13779950	158	2.4	159	80	6	400	18	26	31	23	1.97
13780294--13780343	26	1.9	26	87	0	73	26	24	18	32	1.97
13780475--13780527	26	2.0	26	89	7	81	26	22	22	28	1.99
13781696--13781748	26	2.0	26	92	7	90	26	22	20	30	1.98
13782076--13782125	26	1.9	26	84	8	66	26	28	18	28	1.98
13782955--13783006	25	2.0	26	96	3	97	26	26	21	25	1.99
13781159--13783479	879	2.6	877	79	3	2482	20	26	29	24	1.99
13783625--13783677	26	2.0	26	85	7	72	28	22	18	30	1.98
13784155--13784206	25	2.0	26	88	3	79	28	25	21	25	1.99
13785839--13785894	26	2.2	26	87	6	78	32	25	16	26	1.96
13787332--13787384	26	2.0	26	92	7	90	26	24	20	28	1.99
13787821--13788380	157	3.6	157	79	5	551	17	27	31	23	1.97
13788203--13788564	185	2.0	182	83	3	458	20	25	29	25	1.99
13789488--13789543	26	2.2	26	96	0	103	28	26	19	25	1.99
13789179--13789750	298	1.9	297	85	1	788	21	25	29	23	1.99
13789657--13790025	158	2.3	159	77	8	374	20	25	29	24	1.99
13789991--13790043	26	2.0	26	89	7	81	32	24	15	28	1.95
13790113--13790145	11	3.0	11	100	0	66	18	27	36	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13790964--13791003	21	1.9	21	89	0	62	30	27	37	5	1.78
13791207--13791256	26	1.9	26	88	8	75	24	24	22	30	1.99
13795684--13796187	158	3.2	159	76	8	393	20	26	29	23	1.99
13796356--13796407	26	2.0	26	88	7	79	28	23	19	28	1.98
13796856--13796908	26	2.0	26	89	7	81	28	24	18	28	1.98
13798753--13798805	26	2.0	26	88	0	79	26	24	22	26	2.00
13799257--13799626	159	2.3	158	78	6	381	20	26	29	24	1.99
13799600--13799652	26	2.0	26	89	7	81	26	22	20	30	1.98
13799967--13800018	26	2.0	26	88	3	79	26	25	21	26	1.99
13799528--13800180	354	1.8	362	81	5	813	20	28	28	23	1.99
13800455--13800505	26	2.0	26	92	7	86	27	23	21	27	1.99
13800481--13801298	317	2.6	315	82	3	928	20	26	29	23	1.99
13800481--13801297	159	5.2	155	71	10	471	20	26	29	23	1.99
13802438--13802490	26	2.0	26	92	7	90	26	22	20	30	1.98
13802982--13803346	158	2.3	158	80	5	423	18	25	31	24	1.98
13803321--13803372	26	2.0	26	88	7	79	32	21	17	28	1.96
13804330--13804382	26	2.0	26	85	7	72	26	24	20	28	1.99
13804943--13805707	318	2.4	315	81	6	907	20	27	28	23	1.98
13805131--13805706	159	3.6	159	73	9	469	19	26	28	26	1.99
13806119--13806578	159	2.9	160	79	3	525	20	28	28	21	1.98
13806399--13806821	184	2.3	184	81	4	469	21	25	28	24	1.99
13806731--13806786	26	2.2	26	93	0	94	30	23	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13807294--13807742	159	2.8	158	76	6	388	18	27	30	24	1.98
13807019--13807957	513	1.8	513	84	1	1299	19	26	29	23	1.98
13808261--13808619	158	2.3	157	77	7	357	21	27	25	25	1.99
13808595--13808647	26	2.0	26	92	7	90	26	24	20	28	1.99
13808437--13808807	185	2.0	184	82	4	444	21	27	26	24	1.99
13808951--13809005	26	2.2	25	93	3	92	25	29	20	25	1.99
13808531--13809320	356	2.3	353	80	9	879	19	27	29	24	1.98
13808848--13809979	514	2.2	508	81	5	1177	19	26	29	24	1.98
13808977--13809481	158	3.2	158	74	9	465	18	26	30	24	1.97
13809452--13809504	26	2.0	26	89	7	81	26	22	22	28	1.99
13806956--13809834	857	3.3	847	76	9	2608	19	27	29	23	1.99
13809540--13809981	159	2.8	158	77	4	390	18	27	29	24	1.98
13813029--13813497	158	3.0	159	78	3	523	18	28	30	22	1.97
13813825--13813877	26	2.0	26	92	7	90	26	26	20	26	1.99
13813359--13814556	356	3.4	353	78	7	1167	19	27	29	22	1.98
13813438--13814441	353	2.8	360	82	4	1164	19	26	30	22	1.98
13814191--13814243	26	2.0	26	85	0	70	26	22	22	28	1.99
13814217--13814718	158	3.2	158	77	7	543	18	27	30	23	1.98
13816466--13816518	26	2.0	26	89	7	81	26	20	20	32	1.98
13816308--13816677	184	2.0	184	84	2	474	20	25	28	25	1.99
13816919--13816969	26	2.0	26	88	0	75	31	27	11	29	1.92
13817260--13817312	26	2.0	26	89	7	81	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13818131--13818485	159	2.2	159	79	6	380	20	26	29	23	1.99
13818461--13818511	26	2.0	26	84	7	68	25	23	13	37	1.92
13818662--13818712	26	2.0	26	92	7	86	31	21	15	31	1.95
13818749--13819435	159	4.4	158	72	8	510	19	25	30	23	1.98
13818800--13819379	157	3.7	155	74	6	459	19	26	30	23	1.98
13818750--13819580	316	2.6	312	80	6	798	20	25	30	24	1.98
13819627--13820076	159	2.8	160	81	4	534	19	29	29	21	1.98
13820048--13820100	26	2.0	26	89	7	81	28	22	18	30	1.98
13820173--13820202	11	2.7	11	100	0	60	16	26	40	16	1.90
13821466--13821518	26	2.0	26	89	7	81	28	24	18	28	1.98
13822185--13822237	26	2.0	26	92	0	88	28	24	18	28	1.98
13822211--13822701	159	3.1	157	75	4	493	18	27	30	23	1.98
13823410--13823459	26	1.9	26	95	0	91	26	28	20	26	1.99
13823484--13824814	525	2.6	512	78	7	1270	21	27	29	22	1.99
13824785--13824840	26	2.2	26	93	0	94	28	21	21	28	1.99
13824820--13825315	158	3.1	156	73	9	423	19	26	29	23	1.98
13825365--13825397	12	2.8	12	100	0	66	33	24	36	6	1.80
13825681--13825733	26	2.0	26	85	7	72	24	22	22	30	1.99
13826699--13827142	159	2.8	158	78	7	475	18	28	30	23	1.97
13827114--13827166	26	2.0	26	92	7	90	26	22	20	30	1.98
13827868--13828522	159	4.1	158	78	7	497	20	26	29	23	1.99
13827861--13828513	318	2.1	317	80	3	715	20	26	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13828496--13828548	26	2.0	26	89	7	81	28	24	18	28	1.98
13829364--13829414	26	2.0	26	88	7	77	29	23	17	29	1.97
13830083--13830135	26	2.0	26	88	0	79	28	26	18	26	1.98
13830583--13830633	26	2.0	26	92	7	86	27	23	19	29	1.98
13831314--13831806	159	3.1	157	75	8	410	19	27	29	22	1.98
13832142--13832192	25	2.0	26	96	3	95	31	27	15	25	1.96
13832642--13832694	26	2.0	26	92	7	90	26	24	20	28	1.99
13833033--13833534	158	3.2	156	74	6	413	21	27	28	22	1.99
13833508--13833560	26	2.0	26	85	0	70	24	20	20	33	1.97
13834702--13834754	26	2.0	26	89	7	81	28	24	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138