genome.fa.s124.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  63  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12782791--12782843	26	2.0	26	89	7	81	28	26	18	26	1.98
12784682--12784735	26	2.1	26	92	0	90	24	27	24	24	2.00
12786035--12786087	26	2.0	26	89	7	81	28	24	18	28	1.98
12786411--12786463	26	2.0	26	82	13	65	30	28	16	24	1.97
12787257--12787309	26	2.0	26	88	0	79	28	22	18	30	1.98
12789748--12789800	26	2.0	26	85	7	72	28	22	18	30	1.98
12796321--12796373	26	2.0	26	89	7	81	26	24	20	28	1.99
12796347--12796847	158	3.2	157	76	7	494	21	27	29	22	1.99
12797879--12798237	159	2.3	159	79	5	402	20	25	30	23	1.98
12798272--12798605	171	2.0	170	83	1	427	20	26	30	22	1.98
12798579--12798630	26	2.0	26	85	7	70	28	23	19	28	1.98
12798109--12798822	367	2.0	355	81	5	842	20	26	30	23	1.99
12798604--12799107	158	3.2	159	76	5	378	20	25	29	24	1.99
12799079--12799130	26	2.0	25	89	10	79	25	25	21	28	1.99
12800360--12800747	159	2.5	156	76	6	379	23	26	28	21	1.99
12800837--12800889	26	2.0	26	89	7	81	28	24	18	28	1.98
12800679--12801048	184	2.0	184	82	2	447	19	24	29	26	1.98
12802213--12802265	26	2.0	26	89	7	81	28	24	18	28	1.98
12802916--12802968	26	2.0	26	89	7	81	26	24	20	28	1.99
12802686--12803321	196	3.3	195	77	8	573	20	25	28	24	1.99
12803112--12803164	26	2.0	26	92	7	90	26	24	20	28	1.99
12803480--12803532	26	2.0	26	92	0	88	28	28	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12804375--12804427	26	2.0	26	92	0	88	28	20	20	30	1.98
12805063--12805115	26	2.0	26	88	0	79	32	26	15	26	1.95
12805569--12805621	26	2.0	26	89	7	81	28	24	18	28	1.98
12805790--12805842	26	2.0	26	89	7	81	28	26	18	26	1.98
12806821--12806873	26	2.0	26	92	0	88	28	28	18	24	1.98
12806847--12807347	158	3.2	157	75	5	440	20	27	28	23	1.99
12807321--12807373	26	2.0	26	86	13	74	30	24	16	28	1.97
12808180--12808232	26	2.0	26	88	0	79	28	28	16	26	1.97
12808254--12808708	159	2.9	159	77	2	486	18	28	29	23	1.98
12808247--12808733	158	3.1	158	75	2	510	19	28	30	22	1.98
12809212--12809264	26	2.0	26	89	7	81	26	22	20	30	1.98
12809933--12809985	26	2.0	26	96	0	97	26	28	20	24	1.99
12809959--12810461	159	3.2	156	75	5	483	20	27	29	23	1.99
12811720--12811772	26	2.0	26	92	7	90	30	26	16	26	1.97
12811903--12811955	26	2.0	26	92	0	88	26	26	20	26	1.99
12812235--12812287	26	2.0	26	96	0	97	26	24	20	28	1.99
12812261--12812760	159	3.2	159	77	6	431	19	27	29	23	1.98
12813116--12813168	26	2.0	26	96	0	97	26	28	20	24	1.99
12813274--12813326	26	2.0	26	92	0	88	28	28	18	24	1.98
12813079--12813390	158	2.0	158	88	2	466	24	27	26	20	1.99
12813458--12813510	26	2.0	26	92	0	88	28	22	20	28	1.99
12813237--12813656	184	2.3	183	81	4	472	21	26	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12813484--12813976	159	3.1	157	75	9	498	19	26	30	23	1.98
12814843--12815368	159	3.3	158	79	5	533	19	24	30	25	1.98
12815342--12815394	26	2.0	26	92	7	90	26	24	20	28	1.99
12815970--12816022	26	2.0	26	85	7	72	28	22	20	28	1.99
12816225--12817484	158	8.0	159	77	4	969	20	27	29	22	1.99
12816225--12817483	316	4.0	316	77	6	1129	20	27	29	22	1.99
12817666--12817718	26	2.0	26	89	7	81	26	18	20	33	1.96
12817818--12818199	158	2.4	158	80	6	391	21	26	28	23	1.99
12817936--12818245	158	2.0	157	85	1	415	20	25	30	23	1.99
12817972--12818350	158	2.4	157	80	2	391	19	25	28	25	1.99
12818715--12818767	26	2.0	26	89	7	81	32	24	15	28	1.95
12819064--12819116	26	2.0	26	89	7	81	28	24	18	28	1.98
12825543--12825593	26	2.0	26	92	0	84	27	29	17	25	1.98
12825688--12826241	159	3.4	159	75	7	436	19	27	30	22	1.98
12826214--12826266	26	2.0	26	88	0	79	30	22	18	28	1.98
12828856--12828925	26	2.7	25	86	4	95	31	21	22	24	1.98
12828688--12829109	210	2.0	210	84	0	558	24	28	25	22	1.99
12829779--12829857	26	3.0	27	87	7	85	30	18	21	29	1.97
12829989--12830041	26	2.0	26	92	0	88	26	20	26	26	1.99
12829805--12830276	184	2.6	184	84	1	597	27	28	23	20	1.99
12830173--12830225	26	2.0	26	96	0	97	28	20	24	26	1.99
12830893--12830945	26	2.0	26	92	7	90	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12832710--12832762	26	2.0	26	85	7	72	30	20	20	28	1.98
12832736--12833236	158	3.2	157	73	6	449	23	29	26	19	1.98
12833210--12833262	26	2.0	26	96	0	97	24	20	28	26	1.99
12833248--12833538	159	1.8	158	82	2	368	24	32	25	17	1.97
12833025--12833708	343	2.0	342	84	2	890	23	30	26	19	1.98
12833395--12833761	184	2.0	184	87	1	529	24	29	26	20	1.99
12834050--12834102	26	2.0	26	88	0	79	26	13	28	32	1.93
12834903--12834953	26	2.0	26	92	0	84	25	19	27	27	1.99
12834926--12835295	171	2.2	171	80	7	412	22	32	27	18	1.97
12835269--12835321	26	2.0	26	89	7	81	28	22	22	26	1.99
12835453--12835505	26	2.0	26	86	13	74	26	16	26	30	1.97
12835228--12835578	184	1.9	184	85	3	492	21	29	29	19	1.97
12836493--12836545	26	2.0	26	85	7	72	24	15	28	32	1.95
12836873--12836925	26	2.0	26	89	7	81	30	20	22	26	1.98
12836899--12837399	158	3.2	157	75	7	356	23	29	27	19	1.98
12838473--12839292	317	2.6	317	82	3	927	21	27	28	23	1.99
12838567--12839293	158	4.6	160	75	6	625	20	27	28	23	1.99
12839989--12840041	26	2.0	26	85	7	72	26	26	20	26	1.99
12840332--12840384	26	2.0	26	92	7	90	26	24	20	28	1.99
12840358--12840726	171	2.2	169	78	4	382	20	25	30	24	1.99
12839960--12841067	354	3.2	341	77	10	1118	19	26	30	24	1.98
12840725--12841217	159	3.1	155	74	10	428	18	27	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12841923--12841975	26	2.0	26	96	0	97	30	28	16	24	1.97
12842449--12842490	18	2.3	18	91	0	66	16	28	40	14	1.88
12848587--12848639	26	2.0	26	96	0	97	26	28	20	24	1.99
12848621--12848976	159	2.2	158	76	6	344	22	26	27	23	1.99
12848647--12849154	158	3.2	156	73	7	441	21	25	28	23	1.99
12849272--12849324	26	2.0	26	92	0	88	26	26	20	26	1.99
12849772--12849824	26	2.0	26	85	0	70	26	22	18	32	1.97
12853831--12854453	159	3.9	159	75	3	527	22	26	28	23	1.99
12854511--12854563	26	2.0	26	88	0	79	28	30	18	22	1.98
12854849--12854901	26	2.0	26	89	7	81	28	22	18	30	1.98
12855665--12856068	159	2.5	159	79	5	440	18	28	29	23	1.98
12856040--12856092	26	2.0	26	89	7	81	28	24	18	28	1.98
12857616--12857668	26	2.0	26	88	0	79	28	26	18	26	1.98
12857649--12858145	158	3.1	158	76	7	427	19	27	29	22	1.98
12858758--12858810	26	2.0	26	92	0	88	32	28	13	26	1.93
12859323--12859375	26	2.0	26	88	0	79	30	28	16	24	1.97
12859464--12860132	158	4.2	155	71	8	380	19	25	29	25	1.99
12859464--12860132	317	2.1	316	83	3	835	19	25	29	25	1.99
12860590--12861158	158	3.6	157	73	10	487	18	26	29	25	1.98
12860595--12861317	159	4.6	158	74	6	534	18	26	29	24	1.98
12861659--12861711	26	2.0	26	89	7	81	28	26	18	26	1.98
12861685--12862186	158	3.2	156	75	7	474	19	25	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12865377--12865421	21	2.1	21	100	0	90	17	33	17	31	1.94
12866375--12866427	26	2.0	26	88	0	79	28	26	18	26	1.98
12866875--12866927	26	2.0	26	85	0	70	26	24	20	28	1.99
12868475--12868527	26	2.0	26	85	0	70	32	22	18	26	1.97
12868535--12869005	160	3.0	158	82	2	539	19	28	29	22	1.98
12869070--12869518	159	2.8	156	76	7	467	19	28	29	22	1.98
12869493--12869543	26	2.0	26	92	7	86	27	21	19	31	1.97
12869736--12869790	24	2.3	24	93	3	94	34	23	30	10	1.89
12869895--12869947	26	2.0	26	85	0	70	32	28	15	24	1.95
12870003--12870350	157	2.2	159	82	4	407	17	30	29	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138