genome.fa.s124.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  2  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139252--139440	34	5.5	34	77	5	148	41	12	16	28	1.85
139242--139449	69	3.0	69	74	3	197	42	12	15	28	1.85
139420--139495	17	4.5	16	69	11	53	39	13	15	31	1.86
139420--139495	34	2.2	34	85	0	98	39	13	15	31	1.86
140733--140769	12	3.0	13	84	7	51	5	13	0	81	0.86
144533--144690	60	2.6	59	83	5	194	31	12	6	48	1.68
144533--144708	59	3.0	60	77	7	146	32	11	6	48	1.65
147028--147062	18	1.9	18	88	11	54	80	0	8	11	0.92
147840--147872	2	16.5	2	100	0	66	48	0	0	51	1.00
149826--149856	13	2.4	13	94	0	53	41	19	0	38	1.51
152319--152353	3	11.7	3	100	0	70	31	0	0	68	0.90
154817--154876	30	2.0	30	81	12	70	25	5	6	63	1.39
154978--155041	16	3.9	16	71	21	53	34	4	0	60	1.17
155009--155041	15	2.3	15	89	5	50	30	0	0	69	0.88
154984--155041	30	1.9	30	83	13	75	31	5	0	63	1.16
157945--158171	62	3.6	62	77	5	213	41	16	9	32	1.81
162913--163788	232	3.7	231	76	9	755	36	14	14	35	1.86
163450--164035	294	2.0	295	82	4	709	37	13	13	34	1.85
165333--165685	117	3.1	115	90	3	559	34	13	12	39	1.82
171161--171290	68	1.9	68	87	1	188	35	6	14	43	1.70
172117--172255	55	2.5	55	81	2	181	43	16	11	28	1.82
173250--173299	26	1.9	26	87	0	73	42	10	18	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176678--176776	51	1.9	51	87	4	146	40	10	11	38	1.74
177516--177583	18	3.9	16	78	14	64	17	2	2	76	1.04
177516--177614	30	3.3	30	80	14	107	16	3	4	76	1.06
179054--179098	3	15.3	3	93	4	74	37	0	28	33	1.58
182390--182471	41	2.0	41	97	0	155	41	10	4	42	1.61
183908--184034	63	2.0	63	90	3	202	30	25	13	30	1.94
190069--190097	2	14.5	2	100	0	58	48	0	0	51	1.00
190075--190129	16	3.4	16	76	0	56	32	0	16	50	1.45
191528--191552	2	12.5	2	100	0	50	52	0	0	48	1.00
192415--192451	20	2.0	20	84	10	51	21	8	0	70	1.13
193551--195015	229	6.3	234	71	13	742	32	10	5	51	1.57
193879--193910	14	2.1	16	88	11	50	31	9	0	59	1.29
195016--195066	3	17.0	3	95	0	93	66	1	0	31	1.03
198770--199137	131	2.8	130	82	8	363	19	20	7	52	1.70
201015--201157	77	1.9	77	92	0	241	17	20	6	54	1.66
202225--202257	17	1.9	17	93	0	57	54	12	9	24	1.66
211224--211263	3	13.3	3	83	0	53	30	5	2	62	1.29
212738--212784	17	2.7	17	86	3	58	19	6	2	72	1.17
213095--213137	3	14.7	3	95	4	79	34	30	0	34	1.58
213095--213134	20	2.0	20	100	0	80	35	30	0	35	1.58
218107--218173	34	2.0	34	85	11	93	35	11	11	40	1.79
226317--226366	22	2.2	23	82	3	57	48	0	4	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226434--226479	12	3.7	13	82	2	51	47	0	0	52	1.00
226543--226587	21	2.1	22	84	12	58	37	6	0	55	1.26
228933--228981	18	2.5	20	87	9	66	6	28	4	61	1.38
229291--229325	16	2.1	17	89	5	54	22	20	2	54	1.58
233490--233541	17	3.0	17	82	2	59	51	17	0	30	1.45
236039--236630	30	20.4	29	72	16	249	21	2	30	45	1.64
236034--236296	58	4.5	57	76	12	228	20	2	30	46	1.63
236129--236184	16	3.6	16	73	9	62	19	0	33	46	1.50
236235--236286	14	3.6	14	77	10	59	13	3	34	48	1.61
236034--236626	88	6.9	85	74	11	356	22	2	29	45	1.64
236039--236458	118	3.6	115	74	13	301	22	2	29	45	1.65
236236--236519	52	5.1	52	70	15	185	21	2	30	44	1.67
236297--236647	31	11.9	29	72	15	190	22	1	29	45	1.64
236424--236490	22	3.0	22	78	8	66	29	1	25	43	1.64
236259--236639	172	2.2	173	89	1	597	22	2	30	45	1.64
236531--236647	8	15.4	8	66	18	54	20	0	29	49	1.49
236517--236631	14	7.9	14	66	9	59	20	0	28	50	1.54
237015--237066	3	17.3	3	87	0	77	30	3	1	63	1.23
237896--237950	23	2.3	24	81	12	69	21	16	32	29	1.95
238639--238736	34	3.0	32	76	8	81	46	12	20	20	1.82
238746--238840	35	2.7	35	78	3	91	55	9	13	21	1.66
238864--238962	35	2.8	35	87	0	126	49	18	15	17	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238867--239173	35	8.7	35	71	10	110	48	13	17	20	1.80
239123--239261	72	2.0	70	84	8	183	48	10	18	21	1.78
239057--239456	177	2.3	175	79	5	421	51	10	16	21	1.74
238973--239456	35	13.7	35	71	6	244	50	10	17	21	1.76
239168--239427	105	2.4	107	80	8	273	51	9	16	21	1.72
239255--239456	106	1.9	105	81	8	241	53	10	15	20	1.71
239232--239491	141	1.9	140	80	7	312	53	10	16	20	1.71
247844--247875	13	2.5	13	94	0	55	28	21	12	37	1.90
247868--248906	236	4.4	235	80	5	1107	33	9	11	46	1.72
253086--253833	203	3.7	200	79	4	723	35	12	10	41	1.77
258231--258407	90	2.0	88	81	6	205	22	0	29	47	1.55
258297--258445	30	5.1	29	77	4	140	22	0	27	49	1.54
258376--258454	23	3.6	23	74	20	87	20	0	29	50	1.48
258381--258455	22	3.4	22	74	18	75	22	0	29	48	1.51
258422--258573	30	5.2	30	76	10	161	23	1	28	46	1.61
258436--258490	16	3.6	16	71	14	53	23	1	29	45	1.63
258553--258593	21	2.0	21	90	0	64	26	0	29	43	1.55
258463--258615	58	2.8	55	83	7	179	25	1	28	45	1.62
258680--258730	14	3.7	14	76	5	50	17	0	27	54	1.43
258621--258726	27	3.7	28	80	9	117	17	0	30	51	1.46
258704--258777	30	2.4	30	86	2	103	18	1	33	45	1.58
259163--259207	3	15.3	3	83	4	56	28	4	0	66	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259248--259305	30	1.9	31	82	10	75	60	3	5	31	1.35
262606--262686	33	2.5	33	85	0	108	58	16	0	25	1.38
262962--262995	5	6.8	5	100	0	68	20	0	79	0	0.73
265062--265104	3	15.0	3	85	9	63	65	0	0	34	0.93
265460--265485	4	6.5	4	100	0	52	0	73	0	26	0.84
265483--265528	2	23.0	2	100	0	92	0	50	0	50	1.00
270897--270938	15	2.8	15	81	0	57	38	35	2	23	1.68
279454--279551	41	2.4	41	88	3	137	38	14	22	24	1.91
281242--281285	22	2.0	22	95	0	79	43	13	11	31	1.80
285305--285348	22	2.0	22	95	0	79	43	13	11	31	1.80
289962--290001	3	13.3	3	94	0	71	65	0	2	32	1.06
290662--290700	12	3.0	13	85	11	53	17	5	0	76	0.96
294638--294725	45	2.0	45	100	0	176	22	17	13	46	1.83
305719--305768	25	2.0	25	96	0	91	20	14	22	44	1.86
310057--310088	2	16.0	2	100	0	64	0	50	0	50	1.00
314662--314710	16	2.7	19	78	15	59	32	0	6	61	1.21
315814--315862	17	2.9	16	79	8	53	16	8	0	75	1.03
315883--316451	57	9.8	57	90	7	846	44	7	12	34	1.71
315882--316451	115	4.9	115	91	6	868	45	7	12	34	1.71
316242--316330	27	3.2	27	62	20	65	41	6	14	37	1.72
320263--320292	16	1.9	15	93	6	51	86	0	3	10	0.67
321527--322087	39	14.0	39	92	5	899	22	18	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322094--322142	24	2.1	23	96	3	89	93	6	0	0	0.33
322115--322150	10	3.6	10	88	0	54	88	11	0	0	0.50
322094--322142	1	49.0	1	87	0	71	93	6	0	0	0.33
322329--322390	28	2.2	27	78	16	63	29	0	6	64	1.18
322332--322467	16	8.7	15	66	20	57	26	0	5	66	1.19
322350--322519	66	2.6	64	79	15	145	26	2	4	65	1.26
323423--323467	15	2.9	15	90	6	63	11	4	8	75	1.17
323587--324103	59	8.7	59	88	8	716	45	7	13	33	1.72
323587--324103	116	4.4	117	88	9	748	45	7	13	33	1.72
323829--323917	27	3.2	27	62	20	65	41	6	14	37	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138