genome.fa.s124.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  77  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13889251--13889303	26	2.0	26	88	0	79	28	26	18	26	1.98
13889753--13889802	25	2.0	26	84	11	68	32	24	14	30	1.94
13891189--13891246	26	2.3	26	87	3	82	25	20	20	32	1.97
13890990--13891401	185	2.2	185	83	3	490	23	26	25	24	2.00
13891856--13891908	26	2.0	26	89	7	81	28	24	18	28	1.98
13892239--13892288	26	1.9	26	92	8	84	28	22	20	30	1.98
13892723--13892775	26	2.0	26	89	7	81	28	24	18	28	1.98
13893597--13893891	159	1.9	158	81	5	362	21	27	28	22	1.99
13893949--13894001	26	2.0	26	85	7	72	26	24	20	28	1.99
13894394--13894833	159	2.8	159	81	5	471	17	27	30	24	1.97
13894814--13894885	26	2.8	26	87	4	92	26	22	18	33	1.96
13895553--13895605	26	2.0	26	85	0	70	28	28	16	26	1.97
13895738--13895789	26	2.0	26	96	0	95	25	19	19	36	1.95
13895831--13896413	171	3.3	170	73	10	499	19	26	29	23	1.98
13896470--13896522	26	2.0	26	85	0	70	28	24	20	26	1.99
13895827--13896719	355	2.5	353	83	4	1108	20	26	30	23	1.98
13896567--13896996	158	2.7	158	78	5	404	18	27	30	23	1.98
13896496--13896994	157	3.2	153	74	7	419	19	26	30	23	1.98
13897689--13897741	26	2.0	26	88	0	79	32	24	16	26	1.97
13898187--13898265	26	3.0	26	88	3	115	26	21	20	31	1.98
13898935--13898987	26	2.0	26	82	7	63	30	22	16	30	1.96
13899205--13899496	157	1.9	156	80	4	345	22	25	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13900147--13900195	25	1.9	26	91	4	82	28	26	14	30	1.95
13900639--13900690	26	2.0	25	96	3	95	30	23	17	28	1.97
13900831--13900884	26	2.1	26	92	0	90	27	27	18	25	1.98
13900587--13900970	194	2.0	195	80	4	445	20	28	26	24	1.99
13900105--13901631	687	2.2	695	81	5	1748	21	25	27	24	1.99
13901536--13901588	26	2.0	26	92	0	88	26	26	20	26	1.99
13901752--13901807	26	2.2	26	87	6	78	30	21	17	30	1.96
13901964--13902015	26	2.0	26	84	0	68	34	28	9	26	1.88
13902658--13902707	25	2.0	26	92	4	84	28	28	18	26	1.98
13902991--13903419	185	2.3	183	81	2	475	23	24	27	24	2.00
13904059--13904108	26	1.9	26	88	8	75	28	26	16	30	1.96
13904208--13904502	158	1.9	158	83	4	389	18	26	32	23	1.97
13905393--13905442	26	2.0	25	92	4	82	30	20	22	28	1.98
13905983--13906600	307	2.0	307	84	3	794	22	24	27	24	2.00
13907773--13907830	26	2.4	25	82	8	75	31	27	17	24	1.97
13908114--13908681	185	3.0	183	80	6	552	22	25	28	23	1.99
13908837--13908889	26	2.0	26	96	0	97	26	28	20	24	1.99
13909179--13909231	26	2.0	26	86	13	74	26	26	18	28	1.98
13909290--13909645	159	2.2	159	82	3	421	16	28	31	22	1.96
13910054--13910431	159	2.4	156	79	6	429	23	26	28	20	1.99
13910718--13910770	26	2.0	26	92	0	88	28	28	18	24	1.98
13911354--13911653	159	1.9	162	81	6	378	20	28	29	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13911598--13911709	56	2.0	56	92	0	188	25	23	40	11	1.88
13912627--13912676	26	1.9	26	92	8	84	28	24	14	34	1.93
13913021--13913099	26	3.0	25	90	7	122	29	29	17	24	1.97
13913073--13913819	159	4.7	158	72	7	543	20	27	29	22	1.98
13913080--13913895	318	2.6	314	83	3	958	20	27	29	22	1.99
13913865--13913920	26	2.2	26	90	6	87	30	23	17	28	1.97
13914248--13914300	26	2.0	26	89	7	81	26	22	20	30	1.98
13915715--13916004	158	1.8	158	81	5	354	21	26	27	24	1.99
13915979--13916030	26	2.0	26	92	7	88	30	25	15	28	1.96
13916350--13916402	26	2.0	26	92	0	88	28	28	18	24	1.98
13916549--13916598	26	1.9	26	88	8	75	24	26	20	30	1.98
13916668--13916693	11	2.4	11	100	0	52	26	38	23	11	1.89
13923347--13923397	26	1.9	27	88	4	77	27	29	15	27	1.96
13923374--13924196	317	2.6	316	87	2	1118	18	26	31	24	1.98
13923374--13924195	159	5.2	158	77	8	755	18	26	31	24	1.98
13924537--13924589	26	2.0	26	92	0	88	28	28	18	24	1.98
13924986--13925402	158	2.6	157	78	5	428	18	28	28	23	1.98
13925377--13925429	26	2.0	26	89	7	81	26	22	20	30	1.98
13926082--13926135	26	2.1	26	92	0	90	25	27	20	25	1.99
13926108--13926603	159	3.1	155	75	7	462	19	26	29	24	1.98
13926944--13926994	26	2.0	26	96	0	93	31	25	15	27	1.96
13927283--13927335	26	2.0	26	89	7	81	30	28	16	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13926911--13927652	343	2.2	342	84	3	949	20	26	28	25	1.99
13927783--13927835	26	2.0	26	92	7	90	26	24	20	28	1.99
13928544--13928574	12	2.6	12	94	0	53	25	22	41	9	1.84
13928666--13928718	26	2.0	26	85	7	72	28	24	20	26	1.99
13928819--13929181	159	2.3	159	84	3	446	17	25	30	25	1.97
13928809--13929391	158	3.6	158	75	7	447	18	26	31	23	1.97
13929497--13929547	26	2.0	26	96	0	93	27	31	15	25	1.96
13936621--13936994	159	2.4	158	81	3	423	21	26	28	24	1.99
13936970--13937019	26	1.9	26	88	8	75	30	22	16	32	1.95
13938231--13938283	26	2.0	26	92	0	88	26	26	20	26	1.99
13938296--13938758	159	2.9	157	77	4	428	17	27	31	23	1.97
13939123--13939500	158	2.4	156	76	5	364	21	23	29	25	1.99
13939589--13939641	26	2.0	26	89	7	81	26	22	20	30	1.98
13940507--13941046	184	2.9	184	80	1	548	19	25	30	25	1.98
13940849--13940901	26	2.0	26	92	0	88	26	30	20	22	1.98
13941128--13941179	26	2.0	26	96	0	95	26	28	19	25	1.98
13942352--13942404	26	2.0	26	92	0	88	26	28	18	26	1.98
13942414--13942882	159	3.0	155	77	6	478	19	28	29	21	1.98
13942854--13942906	26	2.0	26	92	7	90	26	24	20	28	1.99
13943235--13943286	26	2.0	26	92	0	86	28	28	17	25	1.97
13943183--13943653	184	2.6	183	81	6	531	20	27	27	24	1.99
13943602--13943653	26	2.0	26	85	7	70	26	25	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13944324--13944376	26	2.0	26	88	0	79	28	24	20	26	1.99
13945533--13945953	196	2.2	189	84	5	521	23	25	27	24	2.00
13946452--13946504	26	2.0	26	96	0	97	26	28	20	24	1.99
13946269--13946554	158	1.8	158	85	3	407	23	25	27	23	2.00
13946636--13946688	26	2.0	26	89	7	81	30	24	16	28	1.97
13946074--13946722	342	1.9	342	81	3	786	22	26	26	24	2.00
13946413--13946846	184	2.4	182	80	3	458	20	25	28	25	1.99
13946729--13947163	159	2.8	155	81	4	503	18	27	30	23	1.98
13946662--13947154	158	3.1	157	79	5	544	19	27	30	22	1.98
13947871--13947921	26	2.0	26	96	0	93	33	29	11	25	1.91
13947930--13948557	159	4.0	159	75	4	541	17	27	31	23	1.97
13947897--13948556	317	2.1	317	82	5	807	18	26	30	23	1.98
13948649--13948700	26	2.0	26	92	0	86	26	23	19	30	1.98
13949694--13949746	26	2.0	26	89	7	81	30	26	20	22	1.98
13950037--13950089	26	2.0	26	92	7	90	26	24	20	28	1.99
13950789--13951274	158	3.1	158	75	5	440	18	27	30	23	1.98
13951830--13951882	26	2.0	26	82	7	63	26	22	20	30	1.98
13958409--13958461	26	2.0	26	88	0	79	30	28	16	24	1.97
13958529--13958939	159	2.6	159	80	5	456	17	28	30	23	1.97
13958911--13958961	26	2.0	26	88	7	77	27	25	19	27	1.99
13959951--13960003	26	2.0	26	85	7	72	30	28	15	26	1.96
13959621--13960099	184	2.6	182	79	4	498	22	27	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13960114--13960504	158	2.5	159	77	6	416	20	27	29	23	1.99
13960772--13961166	158	2.5	158	74	6	363	21	27	28	22	1.99
13961397--13961815	159	2.6	159	79	5	429	18	27	27	25	1.98
13961888--13962177	155	1.9	156	86	2	413	16	27	31	25	1.96
13963416--13963465	26	1.9	26	92	8	84	30	20	26	24	1.98
13963757--13963809	26	2.0	26	89	7	81	26	20	24	28	1.99
13963599--13964078	184	2.6	184	80	5	481	25	27	26	20	1.99
13963232--13963960	341	2.1	341	78	5	724	24	28	25	20	1.99
13963260--13964408	525	2.2	524	86	2	1547	24	28	26	19	1.99
13965463--13965515	26	2.0	26	88	0	79	26	18	26	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138