genome.fa.s124.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  47  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10118156--10118205	18	2.8	17	82	8	64	56	12	4	28	1.54
10118453--10118648	45	4.5	44	71	15	147	42	11	9	36	1.73
10118577--10118666	23	4.0	22	74	11	76	44	12	5	37	1.65
10118582--10118780	66	3.0	66	79	10	190	40	13	9	37	1.76
10119553--10119591	15	2.5	15	87	4	51	0	12	2	84	0.72
10119553--10119592	20	2.0	21	85	5	55	0	12	2	85	0.71
10123822--10124474	220	3.0	216	84	5	805	25	14	14	46	1.81
10125618--10125660	20	2.3	19	81	14	54	51	13	4	30	1.62
10125771--10125859	41	2.2	41	88	9	130	52	11	4	31	1.57
10126185--10126259	6	12.2	6	74	16	64	74	4	2	18	1.09
10128489--10128521	14	2.4	14	85	14	50	48	0	3	48	1.17
10139188--10139230	20	2.1	20	87	12	61	32	18	0	48	1.48
10143035--10143077	20	2.2	19	83	8	50	60	4	16	18	1.52
10144237--10144264	2	14.0	2	100	0	56	50	0	0	50	1.00
10153296--10153329	14	2.4	14	95	0	59	61	32	5	0	1.20
10154551--10154591	11	3.5	11	81	12	55	70	0	0	29	0.87
10154551--10154618	24	2.9	24	82	6	86	67	0	0	32	0.91
10154569--10154636	20	3.2	20	78	13	66	64	1	0	33	1.02
10154687--10154727	16	2.5	17	88	4	57	58	0	0	41	0.98
10154904--10154959	24	2.3	23	80	14	60	50	3	0	46	1.19
10154935--10155035	30	3.3	30	76	8	96	37	11	0	49	1.46
10155021--10155048	7	4.0	7	100	0	56	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10168539--10168674	7	20.6	7	69	14	76	15	0	37	46	1.51
10168537--10168599	13	4.7	14	75	16	62	15	0	38	46	1.47
10168539--10168652	13	8.8	13	70	13	58	15	0	36	46	1.52
10168629--10168696	34	2.0	34	97	0	127	16	0	36	47	1.47
10168628--10168693	20	3.6	19	71	23	61	15	0	37	46	1.46
10168735--10168844	13	8.4	13	66	12	55	18	1	30	50	1.57
10169948--10169980	14	2.3	15	89	5	50	6	12	0	81	0.85
10171143--10171269	50	2.5	50	83	5	175	47	12	9	30	1.73
10171355--10171385	9	3.4	9	100	0	62	61	9	0	29	1.28
10171374--10171639	49	5.4	49	82	3	295	44	11	12	31	1.78
10171374--10171682	97	3.1	97	82	4	334	45	11	13	29	1.79
10172327--10172367	14	2.9	14	88	0	64	12	19	0	68	1.21
10172364--10172421	21	2.8	20	75	19	55	0	6	12	81	0.88
10172385--10172413	14	2.1	14	93	6	51	0	10	6	82	0.83
10172983--10173177	106	1.8	108	83	4	261	41	10	18	29	1.85
10173752--10173798	21	2.1	22	84	7	60	0	8	6	85	0.75
10174691--10174720	14	2.1	14	93	0	51	53	23	6	16	1.66
10175830--10175871	17	2.5	17	80	11	50	7	16	4	71	1.26
10179882--10179959	19	4.2	19	82	9	106	43	26	12	16	1.84
10179861--10179953	37	2.5	37	89	3	132	43	24	13	18	1.87
10183618--10183655	16	2.4	16	86	8	51	68	0	28	2	1.03
10184465--10184557	37	2.6	36	81	13	111	69	12	9	7	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10184894--10184981	14	5.9	14	78	11	54	79	0	17	3	0.86
10184892--10184982	17	5.6	16	75	14	71	79	0	17	3	0.87
10187045--10187223	40	4.4	40	74	10	132	36	11	11	40	1.78
10187168--10187265	41	2.4	41	85	0	124	40	15	6	37	1.72
10187316--10187393	41	2.0	41	82	5	97	37	14	14	34	1.86
10187599--10187697	46	2.2	46	81	7	112	32	9	10	48	1.68
10187727--10187776	6	8.7	6	81	18	54	86	10	2	2	0.75
10187726--10187777	24	2.3	24	81	18	67	84	11	1	1	0.78
10187728--10187776	18	2.8	18	81	3	64	85	10	2	2	0.76
10187726--10187770	24	1.9	23	90	4	72	84	11	2	2	0.80
10190335--10190405	19	3.8	19	80	10	92	45	30	9	14	1.77
10192247--10192432	37	5.0	37	78	1	201	39	8	18	33	1.81
10192247--10192430	75	2.5	74	84	0	224	39	8	18	33	1.80
10195143--10195246	3	35.7	3	73	9	81	58	4	3	32	1.37
10195772--10195912	55	2.6	55	76	4	142	40	14	20	24	1.90
10196668--10196747	41	1.9	42	84	2	108	20	16	12	51	1.76
10199970--10200071	50	2.0	50	96	0	186	38	17	6	37	1.77
10202641--10202688	19	2.5	20	89	6	80	10	18	8	62	1.52
10202647--10202688	19	2.2	19	100	0	84	9	19	9	61	1.53
10207332--10207426	13	7.6	13	71	18	60	74	5	0	20	1.00
10207330--10207420	23	3.9	23	70	24	75	72	6	0	20	1.07
10207332--10207426	42	2.2	45	83	10	126	74	5	0	20	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10208218--10208417	3	68.3	3	70	14	116	57	5	3	33	1.39
10208249--10208369	5	22.4	5	75	11	62	54	6	3	35	1.43
10208311--10208415	22	4.9	22	69	13	85	60	3	2	32	1.29
10208612--10208636	11	2.3	11	100	0	50	16	0	0	84	0.63
10209406--10209439	18	1.9	18	88	5	52	38	8	0	52	1.33
10209717--10209886	6	26.7	6	81	5	52	12	0	39	47	1.42
10209729--10210069	7	52.8	6	70	14	121	12	0	38	48	1.43
10209729--10210066	13	26.1	13	68	12	76	12	0	38	48	1.43
10209731--10210059	26	12.2	26	71	18	160	12	0	38	48	1.44
10209713--10209956	13	19.2	13	73	18	108	15	0	36	47	1.48
10209719--10209956	45	5.3	45	79	9	227	14	0	36	48	1.48
10209971--10210062	27	3.4	27	79	7	116	8	0	44	46	1.34
10210019--10210059	20	2.0	20	85	0	55	4	0	51	43	1.23
10210028--10210069	20	2.1	20	90	0	66	4	0	42	52	1.22
10212197--10212245	10	4.9	10	84	0	62	38	12	10	38	1.77
10217564--10217595	2	16.0	2	93	0	55	53	0	0	46	1.00
10218935--10218984	23	2.2	23	82	13	59	30	0	4	66	1.10
10219385--10219423	14	2.8	13	85	14	51	66	7	17	7	1.40
10221408--10221510	51	2.0	52	86	5	147	46	8	16	28	1.76
10221687--10221757	35	2.0	35	83	0	88	21	4	30	43	1.71
10222248--10222280	13	2.3	15	90	10	52	6	12	3	78	1.04
10222702--10223103	143	2.8	143	82	8	460	41	10	14	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10225795--10225823	13	2.2	13	100	0	58	31	17	13	37	1.89
10228203--10228255	25	2.0	27	82	17	67	41	3	1	52	1.30
10228519--10228557	18	2.2	17	86	9	51	56	0	0	43	0.99
10228646--10228675	16	1.9	15	93	6	51	70	0	0	30	0.88
10230398--10230468	31	2.3	32	79	16	78	32	8	0	59	1.28
10233629--10234185	281	2.0	274	85	6	737	35	15	13	35	1.87
10234444--10234510	22	3.0	22	80	6	82	50	8	5	34	1.58
10234597--10234749	18	8.7	18	68	11	68	46	11	13	29	1.77
10234706--10234749	16	2.7	15	86	10	52	52	13	11	22	1.72
10234829--10234885	21	2.7	21	72	0	60	43	19	3	33	1.68
10242857--10242964	57	1.9	56	90	5	173	43	4	7	44	1.53
10247686--10247733	17	2.8	17	93	0	78	37	2	12	47	1.53
10250855--10250994	62	2.3	61	81	8	151	36	15	6	41	1.73
10251612--10251659	10	4.5	10	78	14	51	81	0	10	8	0.88
10251613--10251656	23	2.0	22	86	4	61	79	0	11	9	0.93
10253592--10253621	11	2.7	11	89	0	51	0	23	0	76	0.78
10253595--10253631	15	2.7	13	88	12	56	0	21	0	78	0.75
10256140--10256193	21	2.6	21	100	0	108	27	22	27	22	1.99
10262656--10262710	10	5.2	10	82	8	65	9	12	0	78	0.97
10264611--10264649	20	2.0	20	89	0	60	30	15	10	43	1.80
10265869--10265930	22	2.8	21	80	11	70	53	1	0	45	1.10
10280712--10280764	6	9.3	6	75	24	53	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10280716--10280771	18	3.2	18	72	23	57	66	0	0	33	0.92
10293761--10293837	38	2.0	38	94	0	136	27	9	32	31	1.88
10295763--10295959	105	1.9	105	89	0	304	25	18	11	45	1.82
10298391--10298436	22	2.0	23	87	4	67	80	8	10	0	0.91
10298399--10298448	25	2.0	25	84	7	66	84	6	10	0	0.79
10298828--10298869	15	2.7	15	89	10	59	80	0	14	4	0.86
10299848--10299904	21	2.7	21	86	0	69	38	8	15	36	1.79
10300122--10300177	22	2.5	22	91	0	85	30	14	21	33	1.93
10300365--10300693	41	7.9	41	86	2	424	24	11	19	44	1.83
10300639--10300752	59	2.0	57	91	3	183	21	14	23	41	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138