genome.fa.s124.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  42  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9249803--9249843	19	2.1	20	90	4	66	14	9	14	60	1.57
9249813--9249855	19	2.2	20	84	8	54	20	9	18	51	1.74
9252613--9252654	19	2.2	20	83	8	52	47	2	2	47	1.28
9254821--9254902	31	2.6	32	81	11	98	37	13	8	40	1.75
9255386--9255441	10	5.5	10	79	14	62	57	8	0	33	1.30
9255378--9255441	20	3.2	19	86	8	83	59	9	0	31	1.29
9255464--9255509	20	2.3	20	81	7	58	30	4	2	63	1.26
9255587--9255634	25	1.9	25	82	0	60	16	2	10	70	1.24
9255654--9255861	9	22.6	10	69	20	66	39	1	2	55	1.26
9255681--9255938	29	9.2	28	67	11	134	39	1	4	54	1.32
9255688--9255785	36	2.7	34	77	16	99	41	3	1	54	1.23
9255670--9255862	38	5.2	36	75	15	128	40	2	3	54	1.28
9255763--9255866	10	11.0	9	73	13	50	42	0	5	50	1.32
9255754--9255899	38	3.9	37	79	14	138	40	0	5	53	1.29
9255904--9255959	10	5.7	10	77	12	53	28	1	5	64	1.26
9255903--9255965	20	3.2	19	77	6	72	26	1	7	63	1.31
9255754--9255979	38	5.9	38	72	11	115	36	1	6	55	1.34
9257073--9257148	31	2.5	31	95	0	134	40	3	11	43	1.60
9268810--9269021	60	3.5	60	76	2	158	24	23	10	41	1.86
9269189--9269225	3	12.7	3	94	5	67	64	0	0	35	0.94
9269224--9269248	3	8.3	3	100	0	50	32	0	0	68	0.90
9269569--9269623	15	3.7	15	85	0	74	21	5	21	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9270020--9270097	13	5.6	13	73	16	59	17	3	3	74	1.12
9270019--9270088	14	4.8	14	76	15	61	17	4	4	74	1.14
9270126--9270169	21	2.1	21	83	8	54	29	2	6	61	1.34
9273774--9273814	20	2.1	19	86	13	57	56	0	0	43	0.99
9283109--9283179	35	2.0	35	97	0	133	43	9	11	35	1.74
9290785--9290856	32	2.2	33	90	2	110	41	18	18	22	1.90
9300710--9300891	32	5.6	33	65	12	90	49	15	15	19	1.80
9300720--9300919	64	3.1	66	76	13	193	50	14	15	19	1.78
9300827--9300919	31	2.9	32	73	10	93	52	13	15	18	1.74
9300720--9300969	64	3.9	64	75	7	157	51	12	14	21	1.75
9300720--9300971	129	2.0	129	81	6	305	51	12	15	21	1.75
9320023--9320066	23	1.9	23	95	0	79	36	0	15	47	1.46
9320724--9320786	24	2.5	25	78	19	76	50	1	3	44	1.27
9321279--9321353	32	2.2	34	81	11	91	62	1	0	36	1.04
9321302--9321353	15	3.3	15	75	5	50	67	1	0	30	1.02
9321863--9321922	29	2.1	29	87	6	86	41	8	1	48	1.43
9323149--9323218	24	2.8	25	72	22	67	32	0	4	62	1.14
9323499--9323532	13	2.5	13	90	4	50	55	8	0	35	1.31
9323812--9323867	5	10.8	5	88	7	85	78	5	0	16	0.92
9324020--9324060	22	1.9	22	85	5	57	24	34	2	39	1.69
9324714--9324739	3	8.7	3	100	0	52	65	0	0	34	0.93
9324953--9324994	20	2.1	20	90	0	66	35	33	16	14	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9324995--9325120	40	3.2	40	77	5	123	46	16	11	25	1.80
9325446--9325497	22	2.4	22	90	0	86	32	11	21	34	1.89
9326015--9326069	26	2.1	26	82	0	65	27	14	23	34	1.94
9327515--9327561	24	2.0	24	83	8	60	8	4	6	80	1.00
9331618--9331655	15	2.5	15	95	0	67	44	13	10	31	1.77
9333525--9333631	49	2.1	51	81	3	119	41	15	5	37	1.71
9334047--9334089	21	2.1	21	91	8	72	20	6	0	72	1.08
9334048--9334095	17	2.7	17	83	6	51	18	6	0	75	1.01
9334213--9334250	17	2.4	17	86	8	53	15	2	7	73	1.17
9334285--9334316	15	2.2	14	94	5	55	68	9	0	21	1.17
9335199--9335244	3	15.3	3	100	0	92	67	0	0	32	0.91
9337469--9337618	76	2.0	76	94	2	266	18	10	21	50	1.75
9339822--9339983	80	2.0	80	93	0	279	31	17	15	35	1.91
9342086--9342130	18	2.5	18	88	0	72	46	2	24	26	1.64
9352641--9352688	2	24.0	2	91	0	78	47	2	2	47	1.25
9358031--9358089	23	2.5	24	80	8	66	42	5	5	47	1.47
9359200--9359346	69	2.1	69	88	1	222	33	17	12	36	1.88
9360621--9360674	26	2.1	26	82	0	63	31	5	18	44	1.73
9364317--9364398	40	2.0	40	83	4	103	31	26	19	21	1.97
9364955--9364982	4	7.0	4	100	0	56	75	0	0	25	0.81
9365065--9365121	15	4.1	13	78	13	51	77	1	0	21	0.86
9365046--9365107	19	3.2	19	80	13	63	72	3	3	20	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9365046--9365121	6	12.3	6	73	15	50	73	2	2	21	1.07
9365714--9365752	19	2.0	20	85	9	55	12	7	2	76	1.09
9365706--9365753	18	2.6	17	78	12	51	16	8	2	72	1.18
9372827--9372857	11	2.8	11	100	0	62	87	0	12	0	0.55
9374989--9375557	59	9.5	59	78	3	444	38	15	18	27	1.91
9375182--9375273	27	3.2	27	70	19	78	39	14	20	26	1.90
9375287--9375437	61	2.5	61	85	1	196	39	11	18	29	1.87
9375038--9375627	120	4.9	119	76	6	338	37	15	19	27	1.92
9375038--9375627	239	2.5	238	76	7	624	37	15	19	27	1.92
9375026--9375574	298	1.8	297	82	4	660	38	15	19	27	1.91
9375946--9375986	8	5.4	8	85	8	50	82	9	0	7	0.83
9375936--9376024	15	5.9	15	73	9	65	82	6	0	11	0.85
9375968--9376028	1	61.0	1	80	0	50	86	4	0	8	0.69
9375936--9376024	21	3.8	24	74	16	73	82	6	0	11	0.85
9375960--9376027	9	7.7	9	75	11	52	85	5	0	8	0.75
9375936--9376029	26	3.6	26	75	16	86	81	6	0	11	0.85
9377582--9377657	38	2.0	38	82	7	91	19	7	1	71	1.18
9380901--9380949	22	2.2	23	85	10	66	57	4	0	38	1.18
9383873--9383928	28	2.0	28	83	13	71	60	0	0	39	0.97
9389518--9390277	385	2.0	386	87	1	1094	40	8	10	39	1.70
9392373--9392411	19	2.1	18	90	4	60	25	5	17	51	1.66
9392413--9392449	19	1.9	19	94	0	65	24	13	16	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9393420--9393523	47	2.2	47	84	3	138	55	8	11	24	1.63
9393644--9393668	13	1.9	13	100	0	50	80	0	4	16	0.87
9399340--9399404	31	2.1	30	82	2	76	70	10	4	13	1.30
9399745--9399861	8	14.2	8	76	15	98	70	0	14	15	1.18
9399771--9399795	11	2.3	11	100	0	50	84	0	8	8	0.79
9399748--9399841	34	2.6	35	86	6	118	71	0	15	12	1.15
9399749--9399861	23	5.0	22	80	13	97	70	0	14	15	1.16
9399748--9399861	57	2.0	59	86	6	162	71	0	14	14	1.16
9399749--9399832	7	11.7	7	76	18	84	72	0	15	11	1.12
9405684--9405722	19	2.1	19	90	0	60	56	7	23	12	1.62
9406206--9406276	33	2.2	33	81	0	79	30	14	15	39	1.87
9406487--9406576	45	2.0	45	88	0	135	31	24	7	36	1.84
9406593--9407074	44	11.1	44	77	5	403	27	13	17	41	1.87
9406593--9407074	131	3.7	130	80	5	435	27	13	17	41	1.87
9407110--9407139	8	3.8	8	90	0	51	86	0	13	0	0.57
9407168--9407598	213	2.0	214	98	0	837	35	12	16	35	1.87
9409686--9410395	161	4.4	161	78	4	687	42	15	9	32	1.79
9409694--9410395	322	2.2	322	79	3	786	42	15	9	32	1.79
9410868--9410893	7	3.7	7	100	0	52	30	0	30	38	1.58
9411602--9411645	23	2.0	23	90	4	72	38	18	9	34	1.82
9412259--9412287	2	14.5	2	100	0	58	51	0	0	48	1.00
9414678--9414860	93	2.0	93	85	4	253	41	5	9	43	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9415295--9415359	28	2.3	28	78	7	69	75	4	4	15	1.13
9417625--9417673	16	2.7	19	78	15	59	32	0	6	61	1.21
9418192--9418262	31	2.3	31	82	0	88	29	23	19	26	1.98
9418707--9418753	12	4.1	11	82	12	51	12	2	4	80	0.94
9418832--9419400	57	9.7	57	88	6	818	43	8	13	34	1.74
9419071--9419159	27	3.2	27	63	20	65	42	6	13	37	1.71
9420617--9420657	21	2.0	21	90	4	66	46	41	2	9	1.50
9420753--9420866	19	5.7	19	66	13	68	48	37	0	13	1.48
9420770--9420968	31	6.4	29	75	14	107	47	39	1	12	1.47
9420823--9420974	6	24.7	6	71	20	66	47	40	0	11	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138