genome.fa.s7.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  100  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23416589--23416656	21	3.2	21	91	2	109	22	0	33	44	1.53
23417026--23417100	11	6.5	11	72	13	53	70	0	24	5	1.07
23423570--23423626	21	2.7	22	86	5	73	26	29	24	19	1.98
23423569--23423618	11	4.6	11	80	5	57	26	30	28	16	1.96
23423676--23423743	21	3.2	21	89	2	100	23	0	32	44	1.54
23424114--23424189	11	6.5	11	72	15	55	69	0	25	5	1.09
23425776--23425946	41	4.2	41	86	3	231	30	19	31	18	1.96
23430351--23430412	19	3.2	18	76	17	54	70	4	0	24	1.06
23443413--23443536	63	2.0	63	96	0	230	26	33	23	16	1.95
23445925--23445956	16	2.0	16	93	0	55	46	25	6	21	1.74
23446299--23446343	21	2.1	21	83	0	54	42	4	6	46	1.50
23453891--23453946	20	2.8	19	80	19	69	51	0	0	48	1.00
23459176--23459219	21	2.0	22	91	4	72	20	2	0	77	0.88
23461742--23461801	31	1.9	31	93	0	102	31	21	8	38	1.83
23463343--23463472	17	8.1	17	69	20	75	43	2	3	50	1.33
23463343--23463458	6	20.0	6	71	16	84	42	2	4	50	1.35
23463343--23463458	11	10.0	12	72	16	84	42	2	4	50	1.35
23464274--23464329	22	2.6	22	83	8	71	41	1	5	51	1.35
23465269--23465535	59	4.5	60	81	7	264	33	28	2	35	1.71
23465269--23465446	30	6.1	28	73	15	123	35	28	1	34	1.68
23465272--23465520	29	8.5	30	67	21	136	35	27	2	34	1.70
23465274--23465569	29	10.1	29	67	24	90	34	27	3	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23465269--23465569	59	5.1	59	81	8	262	33	28	2	34	1.73
23465480--23465565	29	2.9	31	75	20	94	31	27	3	37	1.74
23465480--23465568	30	3.0	31	73	21	91	31	28	4	35	1.77
23467496--23467721	29	7.8	28	72	18	178	32	3	31	32	1.74
23467524--23467753	29	7.9	28	69	21	143	33	2	30	33	1.70
23467461--23467749	59	4.9	59	88	2	372	33	3	30	32	1.76
23467878--23468219	162	2.1	162	89	2	526	42	13	17	26	1.86
23468946--23468986	3	13.0	3	85	10	55	34	0	2	63	1.08
23468947--23468986	16	2.5	16	84	11	55	35	0	2	62	1.09
23468950--23468993	13	3.4	13	78	9	54	38	0	2	59	1.10
23469784--23469848	17	4.0	17	78	11	73	53	0	4	41	1.21
23469797--23469867	11	6.5	11	72	15	58	56	0	4	39	1.19
23469795--23469865	31	2.4	29	88	4	97	56	0	4	39	1.19
23470153--23470962	76	10.8	76	90	2	1181	32	17	16	33	1.93
23470294--23470943	38	17.4	37	65	20	176	32	18	15	33	1.92
23470819--23470950	68	1.9	68	92	3	221	28	20	16	34	1.95
23483043--23483391	59	5.9	59	88	3	479	33	4	30	31	1.78
23483173--23483395	29	7.6	29	73	19	196	34	2	31	31	1.72
23483491--23483861	162	2.3	161	88	2	546	41	14	18	24	1.89
23484589--23484638	3	16.0	3	91	8	82	32	0	2	66	1.03
23485139--23485191	27	2.0	26	81	3	61	22	13	47	16	1.82
23485411--23485475	17	4.0	17	78	11	73	53	0	4	41	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23485424--23485487	11	5.9	11	70	17	53	57	0	4	37	1.19
23485422--23485492	31	2.4	29	88	4	97	54	1	4	39	1.28
23489271--23489683	141	3.0	139	90	1	648	29	18	16	35	1.93
23495797--23495839	20	2.2	20	87	8	61	41	2	0	55	1.12
23496499--23496543	23	2.0	23	86	0	63	35	4	0	60	1.17
23496755--23496787	15	2.1	16	88	5	50	27	0	0	72	0.85
23504908--23504947	20	2.0	20	90	0	62	37	7	2	52	1.43
23504914--23504957	20	2.2	20	83	0	52	38	9	2	50	1.47
23506819--23506979	23	6.9	23	83	6	166	10	24	23	40	1.86
23509259--23509713	227	2.0	227	100	0	910	42	7	14	34	1.74
23510484--23510632	81	1.8	81	85	5	212	34	14	21	30	1.93
23513024--23513073	21	2.4	21	86	0	73	56	0	20	24	1.43
23513625--23513670	22	2.2	22	84	7	60	50	17	6	26	1.70
23513770--23513976	65	3.2	65	88	3	308	30	16	10	42	1.82
23516639--23516687	19	2.5	21	84	12	61	44	8	4	42	1.53
23517119--23517178	31	2.0	31	93	3	104	56	5	0	38	1.21
23522049--23522092	22	2.0	22	100	0	88	31	18	13	36	1.90
23524597--23524641	23	2.0	23	86	0	63	31	13	20	35	1.91
23524850--23524968	57	2.1	58	95	1	213	47	21	0	31	1.51
23525487--23525531	19	2.4	20	85	14	69	20	8	13	57	1.62
23525496--23525538	19	2.2	19	83	8	50	18	9	11	60	1.57
23529331--23529363	17	2.0	17	94	5	59	24	6	0	69	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23535797--23535864	31	2.2	31	97	0	127	38	7	17	36	1.78
23536290--23536327	20	1.9	20	94	0	67	47	0	0	52	1.00
23536292--23536337	20	2.3	20	85	7	58	45	2	0	52	1.13
23540594--23540624	16	1.9	16	93	0	53	45	16	0	38	1.47
23543848--23543906	29	2.0	30	80	9	68	49	13	5	32	1.64
23548129--23548166	19	2.0	20	89	5	60	21	5	7	65	1.38
23550432--23550467	2	18.0	2	100	0	72	50	0	0	50	1.00
23551707--23551836	65	2.0	65	89	3	199	39	8	29	23	1.84
23552511--23552541	16	2.0	16	93	6	55	12	25	16	45	1.83
23564819--23565162	52	6.6	52	89	1	501	25	13	24	36	1.92
23568639--23569053	157	2.7	154	88	3	582	26	18	22	32	1.97
23569410--23569453	20	2.1	21	95	4	81	18	0	13	68	1.22
23570902--23570958	24	2.4	24	87	0	78	49	7	14	29	1.69
23570914--23570964	24	2.1	24	96	0	93	54	3	11	29	1.54
23587696--23587792	41	2.4	41	94	0	167	36	27	6	29	1.81
23587781--23587819	17	2.3	17	86	8	53	48	23	12	15	1.79
23606372--23606421	14	3.8	14	84	7	52	20	10	32	38	1.85
23606385--23606428	14	3.1	14	86	0	52	22	11	27	38	1.88
23612220--23612258	2	19.5	2	100	0	78	48	0	0	51	1.00
23612813--23612871	28	2.1	28	84	6	75	35	5	23	35	1.77
23616569--23616645	27	2.8	27	78	5	66	35	6	20	37	1.79
23618670--23618761	17	5.5	17	80	1	96	35	3	6	54	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23618732--23618775	22	2.0	23	90	4	72	43	0	2	54	1.12
23618667--23618777	6	19.5	6	73	13	65	40	2	6	50	1.42
23619389--23619423	15	2.2	17	90	10	56	37	0	0	62	0.95
23620547--23620951	29	13.8	31	71	16	231	34	26	4	34	1.76
23620673--23620954	59	4.8	59	88	2	417	34	26	4	34	1.77
23621937--23622018	36	2.3	36	89	0	128	29	9	12	48	1.72
23625454--23625485	16	2.0	16	93	0	55	84	0	12	3	0.74
23626349--23626399	8	6.1	8	77	13	50	80	0	15	3	0.86
23626349--23626427	24	3.4	22	79	8	68	77	1	16	5	1.01
23627523--23628508	49	20.1	50	77	6	855	37	19	25	16	1.93
23627523--23628508	196	5.0	196	83	3	1013	37	19	25	16	1.93
23628760--23629173	39	10.7	39	70	7	225	23	30	20	25	1.99
23628758--23629096	77	4.4	77	82	5	353	23	30	20	25	1.98
23628762--23629173	155	2.7	152	77	9	379	23	30	20	25	1.98
23629721--23629761	16	2.5	16	88	4	55	41	4	2	51	1.36
23629783--23629834	11	4.5	11	83	7	68	46	0	1	51	1.12
23629720--23629835	17	6.8	17	76	6	92	40	2	6	50	1.40
23629719--23629835	6	20.5	6	74	12	77	41	2	5	50	1.40
23630454--23630486	15	2.2	15	89	10	50	36	0	0	63	0.95
23631614--23632146	29	18.2	30	67	16	118	33	26	4	35	1.76
23631614--23631683	30	2.3	30	82	4	79	32	28	4	34	1.77
23631702--23631913	58	3.7	58	78	12	213	33	25	5	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23631700--23632139	29	15.0	28	67	24	132	33	26	4	35	1.76
23631704--23632023	145	2.2	146	87	3	439	33	25	4	35	1.77
23631832--23632139	59	5.3	59	84	3	365	34	25	3	36	1.74
23632798--23632898	15	6.8	15	68	15	57	31	0	5	62	1.19
23632800--23632886	46	1.9	45	90	6	140	33	0	5	60	1.20
23632796--23632898	14	7.0	14	70	17	66	32	0	5	62	1.19
23637516--23637603	45	2.0	45	90	4	142	31	0	4	63	1.14
23637520--23637578	14	3.9	16	73	22	56	33	0	5	61	1.18
23637512--23637613	15	7.0	14	71	19	66	31	0	4	63	1.15
23642250--23642353	47	2.2	48	80	11	126	34	0	4	60	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144