genome.fa.s7.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  25  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6223423--6223462	21	1.9	21	85	10	55	22	0	2	75	0.93
6223426--6223473	13	3.5	13	85	8	60	20	2	2	75	1.02
6223528--6223554	6	4.5	6	100	0	54	29	0	0	70	0.88
6224416--6224665	58	4.3	58	84	5	292	36	4	28	31	1.76
6224415--6224692	29	9.5	31	70	23	153	35	4	27	32	1.77
6224474--6224565	31	3.1	30	72	23	86	41	5	23	29	1.77
6224416--6224665	117	2.1	116	86	7	346	36	4	28	31	1.76
6224616--6224812	30	6.6	29	79	8	173	38	2	22	36	1.68
6224638--6224812	90	2.0	89	81	5	210	38	2	21	37	1.66
6224556--6224813	60	4.3	61	80	10	241	37	2	24	35	1.70
6225883--6225907	12	2.1	12	100	0	50	16	32	36	16	1.90
6226606--6226735	35	3.7	34	84	8	154	53	3	1	41	1.25
6226606--6226735	17	7.5	17	82	7	154	53	3	1	41	1.25
6226625--6226703	6	13.5	6	77	10	83	54	1	1	43	1.16
6227032--6227086	12	4.7	12	78	8	51	21	0	3	74	0.97
6227032--6227073	21	2.0	22	90	4	68	23	0	2	73	0.94
6227032--6227086	16	3.5	15	75	20	51	21	0	3	74	0.97
6227034--6227087	21	2.6	20	78	18	65	22	0	3	74	0.98
6227036--6227148	60	1.9	60	81	7	140	24	4	3	67	1.25
6227241--6227266	4	6.5	4	100	0	52	50	0	0	50	1.00
6227341--6227391	18	2.9	17	80	8	57	23	3	5	66	1.30
6229420--6229661	9	25.3	10	67	20	67	31	4	0	63	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6229462--6229644	28	6.4	28	72	13	99	32	4	0	62	1.21
6229444--6229570	19	6.6	20	70	16	72	28	7	0	63	1.26
6229583--6229634	27	1.9	27	88	0	77	38	0	0	61	0.96
6229597--6229657	19	3.1	20	75	17	65	36	0	0	63	0.94
6229597--6229657	20	3.1	20	81	13	74	36	0	0	63	0.94
6230104--6230137	5	7.0	5	90	6	52	76	0	0	23	0.79
6230106--6230162	14	4.1	14	76	15	64	71	5	0	22	1.05
6230118--6230198	22	3.5	23	78	17	80	70	7	0	22	1.12
6230167--6230200	17	1.9	18	94	5	61	73	2	0	23	0.97
6230106--6230197	14	6.4	14	70	18	57	70	6	0	22	1.10
6230166--6230206	18	2.3	18	83	8	57	73	2	2	21	1.07
6231457--6231503	24	2.0	24	91	8	78	27	4	8	59	1.45
6231773--6232078	50	6.2	50	82	3	305	23	17	17	41	1.90
6231773--6232078	100	3.1	98	81	3	346	23	17	17	41	1.90
6232039--6232457	48	8.9	48	79	5	408	22	14	26	36	1.93
6232012--6232463	46	9.6	46	79	4	411	22	14	26	36	1.92
6232466--6232962	99	5.0	99	74	7	380	25	18	20	35	1.96
6232471--6232962	199	2.5	198	86	2	655	25	19	20	35	1.96
6233728--6233758	14	2.3	14	94	5	55	0	19	0	80	0.71
6237820--6237880	5	11.6	5	77	22	63	72	4	0	22	1.04
6237821--6237892	10	6.9	11	77	17	57	72	5	0	22	1.05
6237821--6237908	21	4.1	20	75	16	63	72	4	1	21	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6237822--6237909	22	3.8	22	73	19	65	71	4	1	22	1.11
6242817--6242856	2	20.0	2	100	0	80	50	0	0	50	1.00
6245448--6245503	22	2.6	21	91	5	94	28	3	12	55	1.54
6245500--6245540	18	2.2	19	86	4	57	4	0	17	78	0.93
6245499--6245540	19	2.2	19	87	8	59	4	0	16	78	0.91
6245512--6245542	15	2.0	16	93	6	55	0	0	22	77	0.77
6246315--6246397	43	1.9	43	95	0	148	38	12	15	33	1.85
6248374--6248401	8	3.5	8	100	0	56	39	10	0	50	1.37
6251430--6251545	30	3.9	29	80	9	81	35	28	4	31	1.77
6251477--6251787	29	10.8	28	71	20	198	31	30	4	32	1.79
6251498--6251778	59	4.9	58	83	6	356	32	30	4	32	1.78
6251498--6251778	58	4.9	57	84	6	345	32	30	4	32	1.78
6251498--6251810	59	5.4	57	82	8	334	31	30	5	32	1.79
6251500--6251784	57	4.9	59	81	10	290	32	29	4	33	1.79
6264069--6264320	114	2.2	114	89	0	387	38	21	19	20	1.94
6264744--6264819	17	4.5	17	75	3	73	42	1	5	51	1.33
6266619--6266990	59	6.3	58	83	5	446	30	32	4	32	1.77
6266619--6266990	29	12.7	28	70	21	176	30	32	4	32	1.77
6266635--6266975	175	1.9	177	89	4	539	30	32	4	32	1.78
6270538--6270597	30	2.0	31	90	3	95	26	15	8	50	1.72
6270766--6270941	61	2.9	59	80	6	192	48	10	15	25	1.77
6276487--6276552	27	2.5	27	82	2	71	15	3	31	50	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6276703--6276781	27	2.9	27	81	7	97	21	0	29	49	1.50
6281423--6281496	17	4.4	17	75	0	67	29	25	24	20	1.99
6281421--6281489	34	2.0	34	85	0	93	27	26	26	20	1.99
6286020--6286070	22	2.3	22	80	6	59	29	3	3	62	1.31
6293031--6293079	21	2.3	21	79	6	55	42	2	0	55	1.11
6294487--6294538	24	2.1	25	89	3	79	25	0	5	69	1.10
6294519--6294563	17	2.6	18	77	16	51	26	0	11	62	1.29
6294496--6294548	24	2.2	24	86	6	72	22	0	7	69	1.13
6296861--6296930	28	2.5	27	79	9	70	44	25	1	28	1.63
6296887--6296930	14	3.2	14	80	3	54	43	27	2	27	1.67
6303984--6304080	43	2.3	43	87	5	135	23	20	14	41	1.89
6304776--6304808	12	2.7	13	86	13	52	51	42	6	0	1.26
6305660--6305731	27	2.7	27	82	4	83	29	27	15	27	1.96
6305680--6305732	27	2.0	27	92	0	88	30	20	16	32	1.95
6310086--6310130	19	2.3	20	85	14	60	11	8	17	62	1.53
6311956--6311990	17	2.1	17	88	0	52	45	25	11	17	1.81
6315478--6315517	20	2.1	19	85	4	53	67	2	5	25	1.23
6316216--6316322	30	3.6	28	70	19	76	12	8	6	72	1.26
6316210--6316280	36	1.9	37	82	2	90	11	8	5	74	1.20
6318318--6318378	30	2.0	30	93	6	106	22	29	34	13	1.92
6322308--6322345	10	3.8	10	86	10	51	71	2	7	18	1.23
6322352--6322528	6	28.3	6	85	7	131	18	4	4	72	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6322355--6322464	7	16.9	7	88	6	101	19	7	0	73	1.06
6325014--6325497	43	11.3	43	85	2	553	29	27	17	25	1.97
6327854--6327899	22	2.1	22	87	0	65	82	4	10	2	0.89
6331185--6331524	41	8.3	41	80	3	335	17	28	21	33	1.95
6331199--6331520	82	3.9	82	84	2	378	17	29	20	31	1.96
6331199--6331520	123	2.6	123	82	3	389	17	29	20	31	1.96
6332387--6332451	14	4.6	14	72	14	62	49	0	6	44	1.27
6332475--6332501	7	3.9	7	100	0	54	44	0	14	40	1.46
6332475--6332508	14	2.4	14	90	0	50	41	0	20	38	1.53
6333604--6333636	17	1.9	17	93	0	57	48	3	15	33	1.60
6339708--6339751	14	3.2	13	87	9	61	54	0	4	40	1.21
6340883--6340916	17	2.0	17	94	0	59	47	2	17	32	1.63
6343775--6343813	21	1.9	20	84	5	51	30	0	25	43	1.55
6345099--6345426	158	2.1	157	83	4	401	23	23	23	29	1.99
6354848--6354888	7	5.9	7	100	0	82	29	0	0	70	0.87
6359336--6359390	17	3.2	17	80	15	51	69	0	14	16	1.20
6359343--6359394	25	2.1	23	82	10	59	73	0	11	15	1.11
6360627--6360668	16	2.5	17	76	11	50	52	0	0	47	1.00
6360678--6360726	14	3.2	14	76	20	53	40	2	0	57	1.10
6360662--6360726	32	2.1	32	85	2	87	41	1	0	56	1.08
6360747--6360813	29	2.3	29	94	0	116	46	1	2	49	1.26
6370835--6370878	22	1.9	24	86	9	65	70	2	4	22	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6379687--6379726	20	2.0	20	90	5	62	40	0	2	57	1.12
6384513--6384559	22	2.1	22	84	7	60	14	17	19	48	1.81
6386674--6386759	14	6.1	14	74	5	75	36	15	15	33	1.88
6386674--6386759	28	3.1	28	86	0	109	36	15	15	33	1.88
6392033--6392332	41	7.4	41	86	3	365	31	22	27	18	1.97
6394322--6394529	94	2.2	93	97	0	389	47	9	0	43	1.36
6394405--6394470	30	2.2	30	83	0	78	43	7	0	48	1.31
6394455--6394697	59	3.9	59	69	15	182	48	9	0	41	1.36
6394527--6394638	34	3.2	34	76	9	116	46	11	0	41	1.40
6394416--6394826	131	3.0	134	93	4	684	47	10	0	42	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144