genome.fa.s7.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  141  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37194801--37194833	11	3.1	11	91	4	50	54	0	0	45	0.99
37199359--37199446	45	1.9	46	86	2	124	40	3	2	53	1.30
37199596--37199654	31	1.9	31	86	3	84	37	1	8	52	1.42
37207886--37207925	3	13.3	3	100	0	80	67	0	32	0	0.91
37217714--37217754	4	10.2	4	94	0	64	29	0	19	51	1.47
37224118--37224156	16	2.5	16	87	4	53	46	0	0	53	1.00
37224238--37224315	31	2.5	31	79	6	86	37	6	12	43	1.69
37232251--37232290	13	3.2	13	80	19	50	30	0	0	70	0.88
37239571--37239596	13	2.0	13	100	0	52	30	0	0	69	0.89
37255658--37255729	26	2.6	29	80	8	80	37	1	26	34	1.65
37262333--37263068	234	3.1	235	88	2	1019	17	24	20	37	1.93
37262333--37263091	117	6.4	117	87	3	905	17	24	20	37	1.94
37266670--37266719	21	2.3	21	80	12	57	60	0	0	40	0.97
37272539--37272621	27	3.2	27	63	27	70	18	24	21	36	1.95
37272523--37272754	51	4.5	51	91	0	338	12	27	21	38	1.89
37272730--37272775	21	2.2	21	100	0	92	4	36	21	36	1.74
37272679--37272826	72	2.1	72	98	0	287	9	32	21	36	1.86
37272751--37273047	51	5.8	51	95	0	450	15	27	19	37	1.92
37272628--37272877	123	2.0	123	94	0	437	10	30	22	37	1.87
37272592--37272928	174	1.9	174	93	0	575	11	28	21	37	1.89
37272544--37272979	225	1.9	225	90	0	692	13	27	20	38	1.90
37272940--37273019	24	3.2	24	66	27	67	20	22	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37272917--37272997	27	3.1	27	65	28	75	20	25	18	34	1.96
37276005--37276074	30	2.3	29	83	7	95	14	27	12	45	1.81
37275955--37276123	81	2.1	81	89	0	257	14	26	17	42	1.87
37276036--37276517	51	9.5	51	84	0	606	15	26	18	39	1.91
37276036--37276517	153	3.2	153	86	0	667	15	26	18	39	1.91
37276922--37276949	1	28.0	1	100	0	56	0	100	0	0	0.00
37278354--37278455	50	2.1	49	90	1	159	34	21	8	35	1.85
37288710--37288762	3	17.7	3	100	0	106	0	0	33	66	0.92
37299372--37299403	16	1.9	17	93	6	57	34	3	6	56	1.40
37300369--37300424	2	28.0	2	100	0	112	50	0	0	50	1.00
37302600--37302765	57	3.0	54	81	9	176	21	32	10	35	1.87
37303848--37304173	161	2.0	161	100	0	652	33	7	12	46	1.70
37304535--37304567	17	2.0	17	88	5	50	69	3	0	27	1.03
37308637--37308680	18	2.2	21	88	11	67	31	2	0	65	1.05
37320720--37320756	3	12.0	3	88	5	56	35	32	32	0	1.58
37322978--37323002	3	8.3	3	100	0	50	0	32	0	68	0.90
37331028--37331079	28	1.9	27	88	7	79	28	13	9	48	1.74
37334667--37334694	3	9.3	3	100	0	56	35	0	0	64	0.94
37337961--37338333	189	2.0	189	88	0	557	32	18	11	37	1.87
37349194--37349223	2	15.0	2	100	0	60	50	0	0	50	1.00
37362646--37362693	22	2.2	22	100	0	96	33	20	12	33	1.90
37364687--37364739	6	8.8	6	74	0	52	20	58	5	15	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37364665--37364747	24	3.7	24	68	23	72	19	59	9	12	1.60
37364665--37364781	42	2.8	41	79	10	112	20	58	9	11	1.59
37364759--37364816	24	2.4	23	77	8	62	25	58	6	8	1.53
37364722--37364826	30	3.2	33	71	15	90	24	57	9	8	1.59
37364851--37364972	30	4.3	30	72	16	114	22	49	8	19	1.75
37364905--37364948	12	3.7	12	84	0	61	25	54	6	13	1.63
37365007--37365334	30	11.1	30	77	7	183	21	51	5	20	1.68
37364917--37365209	72	4.1	72	76	6	270	19	50	6	23	1.70
37365036--37365086	15	3.2	18	64	30	51	17	49	3	29	1.65
37365078--37365147	24	3.2	24	61	23	62	17	47	4	31	1.67
37364932--37365159	102	2.2	102	84	0	276	19	49	6	24	1.71
37365064--37365183	42	2.9	42	92	0	195	19	50	5	25	1.67
37365164--37365374	90	2.3	89	81	8	250	23	54	7	15	1.65
37365164--37365374	30	7.1	29	80	10	205	23	54	7	15	1.65
37365295--37365389	30	3.2	29	84	3	118	24	58	5	11	1.53
37365340--37365425	36	2.4	36	76	0	91	22	59	8	10	1.56
37365340--37365453	18	6.3	18	73	8	79	25	57	7	9	1.58
37365377--37365500	6	20.2	6	73	4	50	27	58	5	8	1.51
37366816--37366873	2	29.0	2	100	0	116	50	0	0	50	1.00
37367811--37367858	24	2.0	24	84	8	62	50	12	12	25	1.75
37374657--37374681	13	1.9	13	100	0	50	80	8	0	12	0.92
37384953--37385017	31	2.1	31	86	8	89	53	9	9	27	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37385304--37385328	11	2.3	11	100	0	50	60	0	0	40	0.97
37387781--37387839	31	1.9	31	93	3	102	42	8	11	37	1.72
37392861--37392905	18	2.3	21	81	14	60	68	0	2	28	1.01
37393216--37393397	97	2.0	86	87	12	258	40	5	8	45	1.58
37410727--37410794	28	2.4	29	85	4	86	39	10	16	33	1.82
37411711--37411796	28	3.0	27	85	11	100	48	5	3	41	1.44
37436293--37436333	16	2.6	16	84	0	55	41	2	2	53	1.27
37437836--37437894	31	2.0	30	83	12	77	42	0	1	55	1.09
37438672--37438702	14	2.2	14	100	0	62	38	6	6	48	1.55
37447898--37447925	2	14.0	2	100	0	56	50	0	0	50	1.00
37448098--37448141	22	2.0	22	82	8	54	52	4	2	40	1.34
37462950--37462976	1	27.0	1	100	0	54	0	0	100	0	0.00
37468701--37468725	1	25.0	1	100	0	50	0	0	0	100	0.00
37472273--37472797	105	5.0	105	84	2	583	28	24	14	32	1.94
37513561--37513608	24	2.0	23	84	4	60	58	0	0	41	0.98
37513564--37513648	38	2.2	39	78	17	106	60	1	0	38	1.05
37516186--37516271	31	2.8	31	84	5	95	59	2	2	36	1.23
37516607--37516634	6	4.7	6	100	0	56	17	0	0	82	0.68
37518667--37518730	21	3.0	21	71	15	60	48	1	0	50	1.10
37529321--37529482	80	2.0	81	91	1	263	40	13	7	38	1.73
37550408--37550437	2	15.0	2	100	0	60	0	50	0	50	1.00
37563537--37563590	14	3.6	15	78	16	51	55	0	1	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37563549--37563590	14	3.0	13	89	10	57	57	0	2	40	1.12
37566694--37567087	195	2.0	194	85	5	524	48	15	10	24	1.76
37568150--37568177	5	5.6	5	100	0	56	21	0	0	78	0.75
37568858--37568920	32	2.0	32	84	6	83	55	3	0	41	1.16
37568933--37568978	21	2.1	22	84	11	60	45	10	4	39	1.59
37569193--37569224	16	2.0	16	100	0	64	37	25	0	37	1.56
37573309--37573358	24	2.1	23	85	3	64	34	2	2	62	1.18
37578697--37578816	58	2.1	59	85	4	163	32	5	15	45	1.70
37579389--37579422	16	2.1	17	88	5	52	70	2	14	11	1.27
37590913--37590967	28	2.0	26	82	6	65	43	0	5	50	1.25
37592469--37592494	2	13.0	2	100	0	52	50	0	0	50	1.00
37601289--37601313	2	12.5	2	100	0	50	0	52	0	48	1.00
37612135--37613151	268	3.7	266	81	12	1066	44	19	12	23	1.84
37617987--37618041	5	10.2	5	84	11	56	74	9	0	16	1.06
37617987--37618040	11	4.9	11	82	8	56	75	9	0	14	1.03
37625243--37625277	17	2.1	17	100	0	70	31	11	28	28	1.92
37626174--37626225	25	2.1	25	82	13	63	44	0	1	53	1.11
37630516--37630582	8	8.0	8	83	8	64	58	0	0	41	0.98
37630515--37630583	9	8.0	9	75	19	51	57	0	0	42	0.98
37630518--37630566	23	2.1	23	88	7	73	59	0	0	40	0.98
37630529--37630557	14	2.1	14	100	0	58	65	0	0	34	0.93
37630898--37630924	7	3.9	7	100	0	54	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37630882--37630923	14	3.3	12	84	15	50	57	2	0	40	1.12
37632565--37632630	34	1.9	34	84	6	89	18	28	27	25	1.98
37635325--37635350	11	2.4	11	100	0	52	46	0	7	46	1.31
37637093--37637129	1	37.0	1	100	0	74	0	100	0	0	0.00
37646920--37646988	30	2.3	31	84	2	86	43	4	7	44	1.51
37653115--37653494	138	2.8	136	81	6	407	26	14	22	36	1.93
37673200--37673227	13	2.2	13	100	0	56	32	14	14	39	1.86
37674772--37674804	15	2.3	15	89	5	50	39	0	6	54	1.25
37682896--37682932	16	2.3	16	86	13	58	40	0	0	59	0.97
37683033--37683070	17	2.2	18	95	4	69	55	0	5	39	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144