genome.fa.s7.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  133  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33434896--33434925	15	1.9	16	93	6	53	26	6	6	60	1.47
33435805--33435884	41	2.0	41	85	2	108	33	13	7	45	1.72
33435822--33435904	41	2.0	41	88	0	121	33	21	7	37	1.81
33436065--33436113	21	2.3	21	76	13	55	28	2	20	48	1.60
33442529--33442555	3	9.0	3	100	0	54	0	33	0	66	0.92
33443228--33443266	9	4.3	9	100	0	78	35	10	10	43	1.73
33443272--33443322	3	17.0	3	100	0	102	33	0	0	66	0.92
33470188--33470222	17	2.1	17	88	0	52	11	14	8	65	1.46
33480305--33480350	16	2.7	18	76	10	51	41	0	0	58	0.98
33480418--33480459	21	2.0	22	86	9	61	40	0	2	57	1.12
33480407--33480459	21	2.7	21	80	13	60	41	0	1	56	1.10
33483045--33483187	71	2.0	72	98	1	279	48	4	12	34	1.60
33489691--33489728	19	2.0	19	100	0	76	42	10	15	31	1.81
33490208--33490257	16	3.2	16	73	21	52	60	6	0	34	1.21
33493252--33493290	17	2.4	16	87	8	60	0	33	2	64	1.08
33493448--33493502	27	2.0	27	82	6	67	12	27	20	40	1.88
33494270--33494344	31	2.4	30	80	6	87	38	4	1	56	1.27
33494250--33494348	31	3.2	30	73	8	83	39	4	1	55	1.25
33496832--33496884	18	2.9	17	83	8	61	33	0	1	64	1.05
33496975--33497023	21	2.3	20	82	6	53	40	6	12	40	1.67
33497472--33497560	31	3.0	30	80	8	83	33	5	12	48	1.64
33497694--33497778	31	2.8	30	77	5	82	40	10	10	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33498184--33498267	33	2.5	33	73	19	77	63	11	11	13	1.53
33499103--33499158	15	3.5	15	75	17	58	33	0	1	64	1.04
33499949--33500010	19	3.2	19	75	11	63	58	1	0	40	1.08
33499944--33499999	28	2.0	28	83	10	71	50	1	0	48	1.11
33499973--33500006	16	2.0	17	88	11	52	52	0	0	47	1.00
33505457--33505509	26	2.0	26	96	0	97	15	16	15	52	1.74
33507485--33507553	31	2.3	30	80	14	79	43	15	8	31	1.78
33507926--33507971	23	2.0	21	84	12	56	32	0	2	65	1.05
33508581--33508660	31	2.7	29	86	5	97	32	1	13	52	1.49
33508587--33508660	29	2.4	30	86	6	96	32	1	13	52	1.49
33508587--33508669	29	2.8	29	83	9	78	32	2	13	51	1.53
33511566--33511614	24	2.0	24	84	7	64	48	0	0	51	1.00
33514305--33514331	12	2.2	12	100	0	54	51	22	18	7	1.70
33522560--33522586	7	3.9	7	100	0	54	85	14	0	0	0.61
33530625--33530680	28	2.0	28	100	0	112	32	10	21	35	1.88
33534709--33534829	23	5.2	23	82	11	156	11	25	23	39	1.88
33534709--33534829	48	2.6	46	87	7	172	11	25	23	39	1.88
33534794--33534868	39	1.9	39	91	0	123	12	22	21	44	1.85
33534828--33534921	23	4.0	23	75	16	86	11	25	19	43	1.84
33539534--33539567	17	2.0	17	88	0	50	67	2	2	26	1.19
33549908--33551906	442	4.7	418	81	7	1836	37	19	16	27	1.92
33553522--33553568	22	2.2	22	81	11	53	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33554615--33554648	17	1.9	18	88	5	52	20	5	8	64	1.43
33555576--33555618	17	2.5	17	100	0	86	72	0	9	18	1.11
33560237--33560294	29	2.0	29	93	0	98	39	17	22	20	1.92
33570909--33570978	29	2.3	29	85	4	86	35	8	12	42	1.74
33570930--33570988	29	2.0	30	90	3	93	30	6	13	49	1.68
33570931--33570995	29	2.2	29	86	5	87	30	7	15	46	1.74
33571179--33571245	31	2.3	27	78	14	71	38	11	11	37	1.79
33571426--33571463	20	1.9	20	94	0	67	60	5	2	31	1.33
33576558--33576602	7	6.4	7	78	0	54	48	2	20	28	1.61
33579902--33579933	11	2.8	12	86	13	50	62	0	6	31	1.20
33581500--33581561	30	2.1	30	96	0	115	16	4	35	43	1.69
33581500--33581545	15	3.1	15	75	12	58	17	2	39	41	1.62
33581511--33581560	15	3.3	15	75	10	57	16	6	34	44	1.72
33587723--33587810	23	3.8	23	80	4	88	40	15	12	30	1.85
33607477--33607571	45	2.1	47	88	4	140	43	3	3	50	1.34
33607485--33607555	22	3.3	20	67	17	52	42	2	4	50	1.36
33608597--33608625	2	14.5	2	100	0	58	48	0	0	51	1.00
33611217--33611258	21	2.0	21	85	4	57	45	0	0	54	0.99
33617646--33617678	14	2.4	14	100	0	66	48	6	27	18	1.71
33632959--33632997	17	2.3	17	86	0	51	17	12	23	46	1.83
33633039--33633087	23	2.2	22	82	10	55	63	4	10	22	1.43
33637115--33637214	51	2.0	51	90	4	157	44	12	30	14	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33639434--33639504	21	3.2	20	71	19	61	52	4	4	39	1.41
33641400--33641436	18	2.0	19	89	5	58	43	2	32	21	1.67
33650601--33650665	30	2.1	32	83	13	82	21	0	10	67	1.20
33650728--33650757	5	5.8	5	96	4	51	20	0	0	80	0.72
33650749--33650790	21	2.0	21	90	4	68	21	2	19	57	1.52
33651120--33651184	30	2.1	32	83	13	82	67	12	0	20	1.22
33651420--33651453	13	2.8	12	90	4	50	2	17	0	79	0.86
33652632--33652666	6	5.8	6	100	0	70	17	31	0	51	1.45
33652908--33652951	14	2.8	16	80	16	56	47	0	0	52	1.00
33653186--33653215	13	2.4	13	94	5	53	76	3	0	20	0.92
33666955--33666988	17	1.9	18	88	5	52	70	8	0	20	1.13
33666930--33666988	29	2.1	28	84	12	77	66	6	0	27	1.17
33671805--33671831	12	2.2	12	100	0	54	40	22	11	25	1.87
33677594--33677673	31	2.7	28	77	11	72	60	0	1	38	1.05
33677627--33677674	19	2.5	19	80	10	53	58	0	0	41	0.98
33679350--33679385	18	1.9	19	88	5	56	27	0	2	69	1.02
33680621--33680652	3	10.7	3	100	0	64	65	0	34	0	0.93
33685001--33685042	22	1.9	22	85	0	57	47	4	2	45	1.36
33685355--33685392	20	1.9	20	84	10	51	36	7	0	55	1.29
33690136--33690163	2	14.0	2	100	0	56	0	50	0	50	1.00
33692833--33692868	17	2.1	17	89	0	54	36	2	0	61	1.11
33696811--33696856	24	1.9	24	86	8	67	41	6	4	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33697111--33697173	32	2.0	32	83	0	81	63	7	4	23	1.41
33697473--33697528	17	3.3	17	73	9	60	21	33	1	42	1.63
33702572--33702649	39	2.0	40	94	2	140	39	5	21	33	1.76
33703424--33703475	19	2.7	20	77	14	56	38	0	1	59	1.08
33703438--33703476	20	2.0	19	90	5	60	35	0	2	61	1.10
33703889--33703917	6	4.8	6	100	0	58	17	31	17	34	1.93
33706227--33706269	17	2.6	16	78	10	50	37	13	0	48	1.43
33711472--33711521	25	2.0	26	84	4	66	62	6	2	30	1.31
33712383--33712436	2	27.0	2	100	0	108	50	0	0	50	1.00
33713242--33713299	27	2.1	28	84	9	75	50	13	5	31	1.64
33725959--33725991	13	2.4	14	90	5	50	69	0	9	21	1.15
33731137--33731183	24	1.9	25	82	4	60	57	4	6	31	1.43
33731615--33731674	30	2.0	30	83	6	77	65	5	1	28	1.23
33737141--33737183	16	2.6	16	89	10	61	20	6	2	69	1.23
33755872--33755975	6	18.0	6	70	7	72	40	0	4	54	1.21
33755893--33755954	16	3.8	16	77	8	70	40	0	6	53	1.27
33755872--33755972	34	2.7	37	85	13	145	38	0	4	56	1.21
33755861--33755955	34	2.8	34	95	1	163	37	0	5	56	1.22
33759383--33759416	18	1.9	17	94	5	59	85	14	0	0	0.60
33770129--33770172	2	22.0	2	95	0	79	0	47	0	52	1.00
33777024--33777105	26	2.9	28	76	18	80	32	9	4	52	1.56
33787976--33788009	16	2.1	17	88	5	52	58	17	0	23	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33796143--33796173	15	2.1	15	93	0	53	32	0	0	67	0.91
33807533--33807571	17	2.3	17	90	0	60	15	12	25	46	1.81
33814303--33814359	30	1.9	29	89	10	89	21	15	14	49	1.80
33816113--33816540	59	7.2	57	80	7	401	27	19	17	35	1.94
33816077--33816540	238	1.9	240	84	5	618	27	18	17	36	1.93
33817333--33817387	24	2.3	24	96	0	101	58	3	12	25	1.51
33817348--33817424	30	2.5	30	87	2	100	61	3	7	27	1.42
33817939--33818260	168	1.9	165	88	5	486	47	4	4	43	1.45
33817939--33818260	82	3.9	84	88	4	483	47	4	4	43	1.45
33823378--33823593	119	1.8	119	81	9	271	38	14	17	29	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144