genome.fa.s7.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  59  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12229359--12229437	33	2.4	32	87	8	106	21	7	2	68	1.27
12229376--12229440	33	2.0	33	96	0	121	23	7	3	66	1.32
12229841--12230050	106	1.9	109	82	9	261	33	11	13	40	1.82
12233303--12233353	25	2.0	25	92	0	84	21	17	33	27	1.96
12233303--12233382	13	6.4	12	71	7	52	25	20	31	23	1.98
12242295--12242837	43	12.6	43	83	1	658	21	33	26	18	1.96
12244374--12244417	2	22.0	2	100	0	88	50	0	0	50	1.00
12254746--12254798	20	2.6	20	87	3	70	26	11	20	41	1.86
12258320--12258403	23	3.6	23	83	15	84	13	26	21	39	1.90
12258341--12258479	23	5.9	23	80	9	138	12	24	20	43	1.86
12258536--12258824	139	2.1	139	96	0	533	39	7	25	27	1.82
12265322--12265355	17	2.0	17	94	0	59	44	29	8	17	1.79
12265930--12265982	25	2.2	24	89	3	79	54	0	3	41	1.18
12278728--12278792	25	2.6	25	80	9	87	27	26	13	32	1.94
12280586--12280702	59	2.0	59	86	1	162	23	12	11	52	1.72
12280938--12281007	30	2.3	31	87	7	99	47	12	18	21	1.82
12281875--12282045	89	1.9	89	84	2	227	48	12	15	23	1.79
12293713--12293750	19	2.0	19	89	0	58	34	7	23	34	1.84
12294264--12294290	9	3.0	9	100	0	54	11	11	11	66	1.45
12294524--12294651	60	2.1	61	81	7	154	25	8	11	54	1.64
12294854--12294980	31	4.2	31	71	22	108	51	9	12	26	1.70
12294808--12294984	90	2.0	89	84	3	230	51	10	13	24	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12295973--12296083	55	2.0	55	98	0	213	36	27	9	26	1.86
12296207--12296272	31	2.1	32	88	2	98	45	0	12	42	1.41
12297147--12297195	12	4.1	12	81	0	62	10	6	14	69	1.35
12297147--12297195	24	2.0	24	92	0	80	10	6	14	69	1.35
12297149--12297253	44	2.3	47	80	11	119	5	4	18	71	1.24
12297171--12297275	44	2.4	44	80	4	106	7	4	17	70	1.28
12297258--12297304	22	2.2	22	85	7	62	12	6	10	70	1.33
12306268--12306293	2	13.0	2	100	0	52	50	0	0	50	1.00
12322658--12323364	352	2.0	352	97	0	1342	39	12	15	32	1.85
12332094--12332442	68	5.1	68	80	2	342	36	17	20	24	1.94
12333547--12333576	2	15.0	2	92	0	51	53	0	0	46	1.00
12334898--12334987	34	2.6	34	78	5	101	33	22	21	23	1.97
12334863--12335148	109	2.6	108	80	5	283	36	20	18	24	1.95
12334907--12335185	109	2.6	108	75	7	253	36	20	18	24	1.95
12337828--12337900	36	2.0	36	100	0	146	19	26	5	49	1.69
12341514--12341554	21	1.9	22	85	14	59	43	21	12	21	1.85
12346593--12346643	24	2.1	25	85	3	68	45	33	0	21	1.52
12346772--12346859	7	13.0	7	79	7	83	18	26	21	34	1.96
12346774--12346859	34	2.6	34	88	1	120	18	25	20	34	1.96
12346808--12346862	13	4.2	13	83	2	65	18	21	20	40	1.92
12347912--12347943	15	2.1	16	94	5	57	31	6	0	62	1.20
12360548--12360601	28	1.9	28	88	0	81	42	20	11	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12361143--12361192	25	2.0	26	88	4	75	34	16	8	42	1.77
12361895--12361955	29	2.0	30	81	12	72	24	6	6	62	1.44
12365500--12365560	30	2.0	30	83	0	77	14	37	26	21	1.92
12367313--12367381	6	11.2	6	79	16	61	75	0	2	21	0.93
12367336--12367380	15	2.9	15	96	3	81	75	0	0	24	0.80
12367393--12367421	12	2.5	12	94	5	51	24	13	0	62	1.32
12372688--12372767	23	3.5	22	84	5	97	12	23	28	35	1.91
12372665--12372767	45	2.3	46	78	8	113	11	26	27	34	1.91
12374949--12374988	20	2.0	20	85	0	53	60	5	2	32	1.32
12375623--12375656	16	2.1	16	88	0	50	61	20	11	5	1.50
12385282--12385349	31	2.2	31	86	0	91	39	1	7	51	1.39
12386380--12386422	18	2.6	16	80	16	52	51	0	0	48	1.00
12386896--12386965	35	2.0	35	100	0	140	45	0	5	48	1.26
12389506--12389560	28	1.9	29	85	3	76	80	0	5	14	0.89
12390561--12390601	21	2.0	21	85	9	57	39	7	2	51	1.43
12394206--12394237	7	4.6	7	96	0	55	18	40	0	40	1.51
12397927--12397983	19	3.0	19	84	0	69	26	8	29	35	1.87
12399417--12399448	16	2.0	16	93	0	55	46	6	9	37	1.61
12399867--12400086	120	1.9	116	86	3	314	16	21	11	50	1.76
12410442--12411066	49	12.7	49	77	5	542	34	16	31	17	1.93
12410402--12411066	99	6.7	99	82	4	702	33	16	31	17	1.93
12410492--12411059	246	2.3	248	83	4	675	34	16	31	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12411291--12411446	85	1.8	85	84	0	213	39	14	23	23	1.91
12413415--12413537	30	4.2	29	82	9	133	39	19	3	37	1.68
12413496--12413559	29	2.2	30	82	2	76	39	20	7	32	1.81
12414414--12414476	28	2.3	27	78	10	65	38	3	15	42	1.63
12418823--12419097	136	2.0	136	99	0	541	37	12	20	29	1.89
12420287--12420470	96	1.9	96	86	4	264	23	18	29	28	1.98
12420383--12420551	43	4.0	43	87	1	250	23	19	30	26	1.98
12420383--12420551	85	2.0	86	88	1	250	23	19	30	26	1.98
12428133--12428510	23	16.4	23	86	0	459	47	12	3	36	1.59
12432988--12433034	23	2.0	23	84	8	60	42	8	10	38	1.70
12437072--12437166	38	2.6	36	79	12	106	27	14	25	32	1.95
12437201--12437285	38	2.2	38	95	0	152	24	12	31	30	1.93
12444396--12444436	16	2.6	16	96	3	75	36	17	17	29	1.92
12449192--12449216	13	1.9	13	100	0	50	32	0	20	48	1.50
12450391--12450701	94	3.3	94	82	3	387	27	18	23	30	1.97
12455144--12455437	94	3.2	93	84	4	364	26	17	24	31	1.97
12463663--12463737	21	3.6	21	83	0	87	30	28	12	29	1.92
12464416--12464564	19	8.0	19	75	3	124	28	22	16	32	1.96
12464445--12464543	18	5.4	18	78	3	99	29	22	18	30	1.97
12464428--12464564	37	3.7	37	81	2	159	27	21	17	32	1.96
12464424--12464564	74	1.9	74	82	2	176	28	22	17	31	1.96
12466027--12466061	17	1.9	17	88	11	52	17	8	2	71	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12466073--12466107	15	2.3	15	100	0	70	14	5	22	57	1.59
12474859--12475024	42	3.9	42	73	11	122	34	9	28	27	1.88
12474952--12475034	42	1.9	44	83	9	109	33	8	27	30	1.86
12477548--12477591	19	2.3	19	80	7	54	36	0	4	59	1.18
12478397--12478436	16	2.6	16	88	4	55	15	10	0	75	1.05
12479980--12480043	21	3.1	21	79	4	85	48	14	9	28	1.74
12479983--12480043	20	3.0	21	80	4	79	49	14	9	26	1.75
12484017--12484053	6	6.0	6	87	6	56	16	2	0	81	0.81
12484017--12484062	13	3.5	13	83	16	60	17	2	0	80	0.81
12485585--12485629	19	2.4	19	81	7	56	37	0	4	57	1.19
12486424--12486464	22	1.9	22	90	5	66	14	17	0	68	1.22
12490421--12490472	21	2.5	21	100	0	104	51	7	19	21	1.71
12492807--12493030	42	5.3	43	74	8	165	35	9	27	27	1.88
12492809--12492997	85	2.2	84	83	4	220	34	10	29	25	1.90
12492847--12493030	86	2.2	86	82	5	221	34	9	27	28	1.88
12496575--12496641	28	2.4	28	83	11	84	68	2	0	28	1.04
12499830--12499912	36	2.3	35	77	8	87	38	24	12	25	1.89
12506966--12506990	13	1.9	13	100	0	50	16	0	0	84	0.63
12511383--12511430	24	2.0	24	91	4	78	70	6	2	20	1.19
12518439--12518599	23	6.9	23	82	6	157	40	22	25	10	1.86
12520885--12520937	23	2.3	23	96	0	97	26	18	20	33	1.96
12525802--12525909	23	4.7	24	89	2	107	43	21	24	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12525779--12525915	46	3.0	46	81	5	152	43	22	23	10	1.85
12525828--12525927	23	4.3	23	89	2	121	42	21	26	11	1.85
12525755--12525915	46	3.5	46	77	8	148	42	22	24	11	1.86
12529243--12529272	14	2.1	15	93	6	53	76	3	6	13	1.11
12537481--12537518	19	2.1	18	85	9	51	26	21	10	42	1.85
12557993--12558023	3	10.7	3	93	6	55	67	32	0	0	0.91
12563838--12563880	21	2.0	21	81	0	50	27	6	37	27	1.83
12567204--12567241	15	2.5	15	83	8	51	31	26	26	15	1.96
12570933--12570972	18	2.2	18	86	8	55	55	0	0	45	0.99
12573356--12573406	26	2.0	26	84	3	68	35	3	9	50	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144