genome.fa.s7.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  26  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6394654--6394747	34	2.8	34	83	0	116	45	9	0	44	1.36
6394705--6394826	60	2.0	60	80	3	138	46	11	0	40	1.46
6404559--6404615	30	1.9	30	85	3	80	36	5	7	50	1.52
6407207--6407233	9	3.0	9	100	0	54	33	0	0	66	0.92
6407207--6407258	18	2.9	18	83	8	54	42	0	0	57	0.98
6407241--6407290	21	2.4	20	83	9	64	64	2	0	34	1.05
6416634--6416681	19	2.3	20	82	13	62	47	0	0	52	1.00
6418206--6418251	13	3.2	13	78	21	56	50	2	0	47	1.13
6430730--6431160	214	2.0	207	93	4	729	28	18	15	37	1.92
6432958--6432994	15	2.4	16	82	13	51	81	2	0	16	0.81
6432944--6433015	24	3.0	23	68	9	56	65	2	0	31	1.07
6441292--6441450	82	1.9	82	96	0	291	25	20	15	38	1.91
6441464--6441493	14	2.1	14	93	0	51	36	6	16	40	1.75
6446272--6446427	82	1.9	82	97	0	294	25	19	16	39	1.92
6450372--6450401	14	2.1	14	93	0	51	40	16	6	36	1.75
6450415--6450573	82	1.9	82	98	0	309	38	15	20	25	1.92
6465577--6465611	16	2.2	16	89	0	52	54	8	14	22	1.67
6465783--6466188	119	3.4	118	81	9	443	38	2	22	36	1.67
6465782--6466188	30	13.6	30	78	9	370	38	2	22	36	1.67
6468243--6468413	85	2.0	85	85	2	227	23	21	18	36	1.94
6468121--6468907	210	3.8	209	84	2	938	22	21	17	37	1.94
6470021--6470056	15	2.4	15	95	0	63	30	16	19	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6485345--6485399	21	2.6	21	75	11	67	25	25	20	29	1.99
6491825--6491872	22	2.1	24	88	11	75	6	0	20	72	1.05
6491819--6491872	22	2.4	23	77	20	69	7	0	22	70	1.12
6491890--6491964	12	6.6	12	76	10	59	4	6	21	68	1.30
6491890--6491945	24	2.3	24	93	0	94	5	5	21	67	1.31
6491890--6491959	24	2.9	24	85	8	81	4	5	21	68	1.28
6492141--6492189	22	2.1	22	81	7	53	26	0	10	63	1.26
6497007--6497173	57	2.9	57	81	7	212	30	21	17	30	1.96
6498131--6498233	51	2.0	51	100	0	206	17	21	17	43	1.88
6508262--6508509	52	4.8	52	91	1	372	31	24	15	28	1.96
6512405--6512640	90	2.6	90	75	8	214	34	28	3	33	1.74
6512401--6512635	30	7.9	28	74	14	161	34	28	2	33	1.73
6512408--6512657	60	4.2	58	74	14	188	34	27	3	35	1.73
6522349--6522378	3	10.0	3	100	0	60	66	0	33	0	0.92
6524686--6525203	39	13.3	39	70	12	321	22	31	20	25	1.98
6524682--6525203	78	6.7	78	85	2	647	22	31	20	25	1.98
6524684--6525202	156	3.3	156	87	1	720	22	31	21	25	1.98
6525382--6525891	209	2.4	206	81	2	547	37	17	20	24	1.93
6526322--6526363	20	2.2	20	86	4	59	38	33	14	14	1.86
6527848--6528123	29	9.3	29	79	7	243	37	25	1	35	1.67
6527846--6528130	59	4.8	59	81	8	287	37	24	1	36	1.66
6531844--6531894	19	2.5	20	81	9	50	5	19	0	74	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6536007--6536055	22	2.3	21	80	16	57	67	12	4	16	1.37
6546133--6546236	6	18.0	6	72	18	78	41	1	1	54	1.22
6546145--6546236	17	5.7	16	83	11	116	41	2	1	55	1.19
6546133--6546236	11	9.0	11	72	15	68	41	1	1	54	1.22
6548084--6548430	30	11.5	30	82	4	304	38	23	2	36	1.70
6548421--6548514	28	3.3	27	69	15	82	31	31	1	35	1.65
6548416--6548550	58	2.3	57	91	3	216	32	31	2	34	1.70
6556477--6556505	10	2.7	11	94	5	51	58	0	13	27	1.36
6556947--6557060	23	5.0	23	88	6	160	9	23	23	42	1.83
6562964--6563443	68	6.9	68	90	3	665	34	15	20	29	1.94
6562888--6563443	205	2.6	208	87	5	742	34	15	20	29	1.94
6562888--6563443	137	3.9	136	87	4	734	34	15	20	29	1.94
6563213--6563324	31	3.4	31	71	17	109	35	12	20	31	1.90
6562874--6563449	68	8.1	75	86	8	470	34	15	20	29	1.94
6563761--6563864	6	18.0	6	72	18	78	41	1	1	54	1.22
6563773--6563864	17	5.7	16	83	11	116	41	2	1	55	1.19
6563761--6563864	11	9.0	11	72	15	68	41	1	1	54	1.22
6565710--6566053	30	11.4	30	84	5	365	38	23	1	36	1.65
6565710--6566053	151	2.3	151	85	4	455	38	23	1	36	1.65
6566044--6566137	29	3.3	26	68	15	62	31	31	1	35	1.65
6566017--6566168	58	2.6	56	83	12	182	32	30	1	34	1.69
6566034--6566168	58	2.4	57	87	7	193	33	29	1	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6580319--6583259	437	6.8	437	88	4	4133	34	13	12	39	1.82
6580319--6583259	876	3.4	870	88	3	4257	34	13	12	39	1.82
6583871--6583934	31	2.1	31	84	0	83	60	4	3	31	1.32
6587679--6587728	3	16.7	3	100	0	100	66	0	0	34	0.92
6589852--6589883	5	6.4	5	92	0	55	40	3	0	56	1.15
6595508--6595532	2	12.5	2	100	0	50	48	0	0	52	1.00
6596621--6596646	6	4.3	6	100	0	52	84	0	0	15	0.62
6601659--6601688	8	3.6	8	95	4	51	36	3	0	60	1.14
6602991--6603022	15	2.1	15	94	0	55	31	9	0	59	1.29
6603011--6603036	13	2.0	13	100	0	52	23	0	0	76	0.78
6606241--6606339	49	2.0	49	100	0	198	40	6	8	45	1.58
6606839--6606888	25	2.0	25	88	7	75	50	0	0	50	1.00
6606868--6606906	15	2.4	16	87	8	53	35	0	0	64	0.94
6606863--6607025	83	2.0	83	79	10	181	41	1	5	51	1.33
6610097--6610146	25	2.0	25	92	0	82	40	20	20	20	1.92
6610273--6610392	51	2.3	54	82	7	140	8	4	15	71	1.26
6610372--6610409	15	2.7	15	88	8	53	10	5	7	76	1.15
6610268--6610436	57	3.2	52	76	9	137	8	4	15	72	1.24
6616684--6616772	31	3.0	30	77	4	99	40	13	12	33	1.82
6617722--6617865	10	14.5	10	70	10	82	32	2	1	63	1.14
6617722--6617863	30	4.8	28	73	8	95	33	2	1	63	1.15
6617841--6617865	11	2.3	11	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6617772--6617863	39	2.4	37	80	10	103	32	2	0	65	1.05
6617723--6617863	19	7.2	20	76	7	94	33	2	1	63	1.15
6618473--6618497	4	6.2	4	100	0	50	48	0	0	52	1.00
6628758--6628787	15	2.0	15	100	0	60	40	26	13	20	1.89
6632733--6632758	2	13.0	2	100	0	52	50	0	0	50	1.00
6634725--6635013	97	3.0	97	86	5	401	39	15	17	27	1.90
6635356--6635752	29	13.6	28	80	11	249	32	3	28	35	1.74
6635368--6635514	59	2.5	58	77	9	140	31	5	30	31	1.80
6635462--6635714	30	8.7	28	85	8	215	32	1	28	37	1.68
6635463--6635752	29	9.9	30	84	11	286	32	2	28	36	1.70
6635463--6635752	59	4.9	57	81	12	247	32	2	28	36	1.70
6637458--6637548	17	5.4	17	81	0	110	54	6	1	37	1.34
6638401--6638440	20	2.0	20	90	0	62	52	20	15	12	1.74
6638462--6638505	15	3.0	14	83	9	61	43	11	15	29	1.82
6640709--6640733	7	3.6	7	100	0	50	44	0	0	56	0.99
6640930--6640961	16	1.9	17	93	6	57	31	0	0	68	0.90
6641901--6641938	17	2.3	17	81	4	51	55	0	2	42	1.14
6641936--6641985	25	2.0	24	85	11	66	72	2	0	26	0.96
6641933--6641985	26	2.1	25	85	3	70	71	1	0	26	0.96
6641960--6642010	20	2.6	20	75	3	59	68	0	1	29	1.00
6649891--6649940	26	1.9	26	87	0	73	48	10	10	32	1.70
6649942--6649996	28	2.0	28	81	0	65	40	7	10	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6649999--6650050	24	2.2	24	86	6	70	25	1	5	67	1.23
6655422--6655470	12	4.0	12	82	10	55	2	30	0	67	1.02
6655423--6655469	20	2.3	20	81	0	58	2	31	0	65	1.04
6656465--6656646	87	2.1	88	88	4	269	31	23	11	34	1.90
6660512--6660557	23	2.0	23	91	0	74	50	23	4	21	1.67
6679798--6679850	26	2.0	26	100	0	106	47	7	15	30	1.73
6681417--6681541	23	5.3	23	82	8	137	43	21	24	11	1.85
6685291--6685347	10	6.2	9	82	15	64	84	1	10	3	0.82
6685288--6685340	16	3.1	16	86	10	70	84	1	11	1	0.77
6685292--6685347	26	2.1	27	87	9	80	83	1	10	3	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144