genome.fa.s7.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  122  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28807894--28807932	17	2.3	17	100	0	78	35	15	5	43	1.69
28808242--28808276	3	11.7	3	87	0	52	28	0	5	65	1.15
28808835--28808896	25	2.5	24	73	14	63	72	1	4	20	1.12
28809582--28809624	10	4.7	9	81	13	52	32	0	0	67	0.91
28809767--28809810	21	2.0	22	86	4	63	75	0	4	20	0.98
28809885--28809918	16	2.2	16	89	5	52	47	2	0	50	1.16
28810155--28810201	24	2.0	24	91	4	78	55	6	0	38	1.26
28810470--28810511	16	2.5	17	81	14	52	40	0	4	54	1.21
28814932--28814969	17	2.2	17	90	0	58	47	26	10	15	1.78
28820088--28820145	28	2.1	28	84	9	75	18	6	6	67	1.37
28820125--28820170	23	2.0	24	86	4	67	19	0	10	69	1.17
28824852--28824911	21	3.0	19	77	20	68	41	1	0	56	1.09
28824859--28824911	11	5.2	11	77	11	51	43	1	0	54	1.11
28824854--28824915	20	3.2	19	76	19	65	37	1	0	61	1.06
28825142--28825187	21	2.2	21	88	3	67	30	2	8	58	1.40
28825223--28825262	20	2.0	20	85	0	53	55	7	0	37	1.29
28838207--28838266	28	2.1	29	81	9	70	38	0	3	58	1.15
28838287--28838316	15	1.9	16	93	6	53	56	3	0	40	1.16
28842563--28842610	12	4.0	12	75	0	51	39	12	16	31	1.86
28842551--28842608	24	2.4	24	85	0	71	43	12	17	27	1.84
28845360--28845543	92	2.0	92	98	0	359	16	12	16	54	1.70
28851600--28851644	21	2.1	22	88	8	67	42	2	2	53	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28858762--28858800	16	2.2	19	86	13	57	51	5	2	41	1.38
28863410--28863450	21	2.0	21	85	4	57	56	2	0	41	1.13
28877921--28877967	16	2.8	17	78	15	53	53	0	46	0	1.00
28882186--28882739	274	2.0	279	92	3	931	39	13	14	32	1.85
28889395--28889459	32	2.0	34	82	11	82	38	9	1	50	1.44
28889592--28889639	21	2.3	21	78	7	53	47	4	0	47	1.21
28893913--28893953	15	2.8	15	85	10	50	43	0	2	53	1.13
28894563--28894599	17	2.1	18	85	14	51	43	0	0	56	0.99
28894596--28894647	24	2.3	21	81	18	61	50	0	1	48	1.12
28894596--28894650	23	2.5	21	78	18	58	49	0	1	49	1.11
28899009--28899058	21	2.4	20	80	6	55	50	0	2	48	1.12
28912236--28912266	16	1.9	16	93	0	53	22	3	3	70	1.16
28939252--28939291	21	2.0	20	85	14	55	62	0	5	32	1.17
28942689--28942733	15	3.0	15	83	0	54	40	0	46	13	1.43
28942735--28942810	28	2.9	27	85	12	90	39	9	32	18	1.82
28942735--28942789	23	2.4	23	96	0	101	40	10	32	16	1.83
28942799--28942992	100	1.9	100	97	0	370	37	10	20	31	1.86
28944302--28944395	48	2.0	48	95	0	170	27	20	19	32	1.96
28952710--28952755	23	2.0	24	83	12	60	21	2	8	67	1.29
28971673--28971732	29	2.1	29	84	12	79	26	6	3	63	1.35
28977118--28977172	18	3.1	18	79	7	58	50	1	1	45	1.22
28983075--28983210	66	2.1	66	98	1	265	37	8	16	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28985402--28985440	12	3.0	13	85	11	53	46	0	0	53	1.00
28989095--28989123	1	29.0	1	100	0	58	0	0	100	0	0.00
28989776--28989824	25	2.0	23	84	7	62	28	4	4	63	1.31
28990149--28990204	28	2.0	28	86	6	78	39	7	0	53	1.28
28994244--28994300	29	1.9	30	85	3	80	43	15	8	31	1.78
29006826--29007629	402	2.0	396	95	1	1457	33	19	23	23	1.97
29020156--29020189	12	2.8	12	90	0	50	76	0	23	0	0.79
29020152--29020188	18	2.0	19	89	5	58	72	0	27	0	0.84
29020292--29020316	6	4.2	6	100	0	50	36	16	32	16	1.90
29022586--29022641	24	2.4	24	88	8	80	26	7	7	58	1.50
29022586--29022651	24	2.8	24	84	6	64	28	9	9	53	1.63
29026733--29026785	22	2.6	20	82	11	63	64	0	1	33	1.05
29026739--29026802	22	2.8	22	76	4	65	67	1	3	28	1.15
29028509--29028550	20	2.1	20	86	8	59	64	4	7	23	1.38
29030001--29030043	2	21.5	2	100	0	86	51	0	0	48	1.00
29034873--29034930	31	1.9	30	86	6	82	51	1	3	43	1.28
29044801--29045234	231	1.9	230	88	0	652	41	10	10	38	1.73
29049010--29049417	200	2.0	201	87	1	577	27	22	20	28	1.99
29057481--29057517	10	3.7	10	96	0	65	43	8	16	32	1.77
29058151--29058368	29	7.5	30	67	21	103	34	4	30	31	1.77
29058155--29058592	58	7.3	59	81	10	507	34	3	29	32	1.74
29058387--29058581	29	6.7	29	71	18	147	35	3	29	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29058427--29058599	29	5.9	28	70	17	95	36	2	26	34	1.69
29060396--29060429	18	1.9	17	88	5	50	35	0	2	61	1.11
29060437--29060511	17	4.6	17	83	9	84	54	2	4	38	1.33
29060436--29060522	11	7.4	12	78	11	56	54	3	3	39	1.34
29060436--29060500	6	10.8	6	76	12	62	53	1	4	40	1.31
29060437--29060495	31	1.9	31	92	0	100	54	1	5	38	1.33
29061676--29061801	45	2.8	45	84	3	148	20	23	19	36	1.95
29075861--29075885	3	8.3	3	100	0	50	32	32	0	36	1.58
29078886--29078911	7	3.7	7	100	0	52	38	0	0	61	0.96
29080527--29080552	5	5.2	5	100	0	52	80	0	0	19	0.71
29084391--29084445	20	2.8	20	71	15	53	72	0	0	27	0.85
29084525--29084587	19	3.3	19	71	10	56	57	0	9	33	1.31
29090634--29090661	2	14.0	2	100	0	56	50	0	0	50	1.00
29094964--29095006	21	2.0	22	82	13	54	48	2	16	32	1.58
29101781--29101823	21	2.0	22	82	13	54	48	2	16	32	1.58
29117370--29117438	31	2.3	29	80	9	77	43	10	5	40	1.62
29125443--29125494	18	3.0	18	89	10	74	44	0	0	55	0.99
29125452--29125494	16	2.6	17	89	10	63	44	0	0	55	0.99
29126167--29126200	16	2.2	15	89	5	50	50	2	5	41	1.42
29132821--29132855	18	2.0	17	94	5	61	34	25	11	28	1.91
29133456--29133533	39	2.0	39	84	0	102	39	26	10	23	1.86
29143226--29143274	22	2.2	22	81	0	62	22	10	8	59	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29143303--29143367	30	2.2	30	88	0	94	23	6	13	56	1.59
29144571--29144602	15	2.1	16	94	5	57	62	0	6	31	1.20
29147978--29148027	24	2.1	23	85	3	64	50	2	0	48	1.12
29159233--29159281	23	2.1	23	84	3	62	32	0	4	63	1.13
29159558--29159616	23	2.5	24	88	5	84	57	10	11	20	1.63
29161706--29161731	13	2.0	13	100	0	52	15	38	7	38	1.76
29164563--29164616	26	2.1	26	92	0	90	37	14	12	35	1.85
29164571--29164620	26	2.0	26	96	4	93	36	12	12	40	1.79
29171789--29171864	28	2.7	29	80	10	86	27	5	7	59	1.47
29172045--29172109	29	2.2	31	88	5	98	47	9	13	29	1.74
29172063--29172121	31	1.9	31	86	6	84	50	11	11	25	1.73
29172691--29172724	17	2.0	17	88	0	50	35	0	11	52	1.38
29172712--29172774	17	3.8	16	79	6	63	42	0	4	52	1.22
29172714--29172791	33	2.3	33	82	2	93	41	1	6	51	1.36
29174836--29174976	60	2.4	60	89	3	214	39	24	2	33	1.67
29174836--29174952	30	3.9	30	91	0	198	38	23	2	35	1.68
29176856--29176885	15	2.1	14	93	6	51	83	6	6	3	0.90
29177886--29178042	55	2.9	55	86	1	217	27	7	14	50	1.69
29179546--29179586	21	2.0	21	90	0	64	56	2	9	31	1.45
29182237--29182276	2	20.0	2	100	0	80	50	0	0	50	1.00
29182276--29182325	2	25.0	2	100	0	100	50	0	50	0	1.00
29190592--29190718	63	2.0	63	100	0	254	41	15	9	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29194058--29194105	16	3.0	16	90	0	60	12	47	2	37	1.53
29194058--29194105	24	2.0	24	87	0	69	12	47	2	37	1.53
29194058--29194094	8	4.6	8	100	0	74	10	51	0	37	1.37
29196608--29196662	2	29.0	2	89	10	89	49	0	50	0	1.00
29202583--29202630	20	2.5	19	83	6	60	54	14	2	29	1.52
29202594--29202646	20	2.7	20	88	2	81	54	9	5	30	1.55
29203667--29204184	110	4.7	109	80	5	506	32	24	17	26	1.96
29226556--29226601	11	4.2	11	81	8	58	69	0	0	30	0.89
29226552--29226599	23	2.1	22	92	3	78	68	0	0	31	0.90
29233159--29233190	3	10.7	3	100	0	64	0	31	0	68	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144