genome.fa.s7.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  65  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14088442--14088582	46	3.0	47	78	5	149	17	11	19	51	1.76
14088577--14088615	17	2.4	17	86	4	53	12	20	7	58	1.58
14088613--14088804	58	3.4	56	75	9	176	21	11	19	46	1.82
14088546--14088804	112	2.3	115	83	5	301	19	13	19	47	1.82
14099892--14099916	3	8.3	3	100	0	50	36	0	0	64	0.94
14100849--14100944	31	3.2	30	65	21	74	29	5	14	51	1.64
14100859--14100950	29	3.1	29	65	17	71	30	4	14	51	1.61
14100847--14100960	60	1.9	60	90	0	183	28	6	13	52	1.63
14101224--14101267	17	2.5	19	82	14	58	34	0	6	59	1.24
14101224--14101273	18	2.9	16	82	14	55	34	0	6	60	1.21
14101292--14101405	43	2.7	42	81	6	133	35	4	5	54	1.43
14103336--14103376	22	1.9	22	90	5	66	41	0	4	53	1.22
14103584--14103643	30	2.0	30	84	12	79	66	1	5	26	1.21
14103659--14103776	14	8.1	14	68	12	60	69	5	5	19	1.28
14103714--14103763	18	2.9	17	85	5	57	74	8	4	14	1.20
14103723--14103802	11	8.1	10	70	20	53	73	7	1	17	1.12
14103727--14103802	18	3.9	19	76	20	77	73	7	1	17	1.13
14104479--14104520	21	2.0	21	86	9	59	54	9	7	28	1.59
14105687--14105728	12	3.7	12	81	9	52	21	0	4	73	1.01
14107279--14107321	12	3.7	11	84	9	50	37	0	2	60	1.10
14107323--14107381	28	2.1	28	93	3	102	25	6	8	59	1.51
14111245--14111269	7	3.6	7	100	0	50	44	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14111248--14111291	16	2.9	15	83	9	54	38	0	2	59	1.10
14111305--14111339	17	2.1	17	88	0	52	34	2	8	54	1.46
14111850--14111897	7	6.6	7	81	9	51	35	2	0	62	1.07
14111838--14111895	30	1.9	30	85	0	80	39	6	0	53	1.28
14112919--14113091	30	5.8	30	76	11	142	35	25	4	34	1.77
14112919--14113060	59	2.4	60	83	9	166	38	25	2	33	1.71
14113074--14113155	29	2.8	29	78	8	87	28	29	9	32	1.89
14118139--14118195	23	2.4	23	83	11	71	82	0	12	5	0.82
14118139--14118194	6	9.3	6	76	21	55	82	0	12	5	0.83
14119098--14119284	50	3.7	50	76	6	173	35	19	31	14	1.91
14119138--14119342	101	2.0	101	80	5	227	39	18	28	14	1.89
14119582--14119663	39	2.1	38	82	6	94	23	29	25	21	1.99
14119713--14119832	39	3.1	39	73	3	118	24	30	19	26	1.98
14120649--14120673	7	3.6	7	100	0	50	44	0	0	56	0.99
14120657--14120759	17	6.1	17	87	2	145	37	0	3	57	1.24
14120652--14120767	6	19.8	6	73	12	73	39	0	3	56	1.22
14120650--14120766	23	5.0	23	73	12	71	39	0	3	56	1.22
14122014--14122073	29	2.0	30	84	9	79	28	10	3	58	1.46
14122296--14122442	29	4.9	29	81	12	156	37	25	2	34	1.68
14122296--14122443	59	2.5	60	80	11	169	37	25	2	35	1.68
14122424--14122499	29	2.6	30	79	8	102	32	25	7	34	1.85
14122429--14122533	28	3.7	28	76	12	97	28	27	10	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14122424--14122555	28	4.6	28	72	13	92	30	25	9	34	1.88
14131540--14132696	93	12.3	93	77	9	919	33	17	23	26	1.96
14131536--14132696	190	6.2	186	78	7	1061	33	17	23	26	1.96
14131536--14132427	375	2.4	376	88	1	1313	32	17	23	25	1.96
14134434--14134479	24	1.9	24	86	0	65	26	0	8	65	1.21
14137993--14138101	30	3.9	28	75	12	89	55	11	12	19	1.67
14148543--14148622	29	2.8	29	96	0	142	51	15	10	23	1.73
14150588--14150636	22	2.5	20	81	18	59	73	4	2	20	1.10
14150800--14150846	13	3.8	13	88	5	71	21	40	23	14	1.90
14168159--14168490	49	6.8	49	72	9	248	39	20	23	16	1.92
14168159--14168490	98	3.4	98	85	5	449	39	20	23	16	1.92
14168955--14169008	7	7.4	7	81	6	54	75	1	1	20	0.98
14169086--14169133	19	2.5	19	93	0	78	54	33	6	6	1.51
14169181--14169228	11	4.2	11	87	10	60	27	43	14	14	1.84
14173088--14173133	22	2.0	23	83	4	58	54	0	4	41	1.20
14174871--14174924	25	2.2	25	78	21	62	61	0	5	33	1.19
14175853--14175886	15	2.2	16	89	5	52	32	0	0	67	0.91
14176373--14176410	20	1.9	20	88	0	58	50	21	5	23	1.69
14185332--14185392	28	2.2	28	84	0	77	44	18	4	32	1.71
14192248--14192306	10	6.1	10	71	15	52	64	0	0	35	0.94
14192320--14192380	21	2.9	21	80	7	70	50	21	0	27	1.49
14192320--14192381	22	2.9	22	80	9	74	51	20	0	27	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14192356--14192385	14	2.1	15	93	6	53	60	20	0	20	1.37
14192427--14192487	29	2.0	30	90	6	97	36	0	14	49	1.44
14192636--14192685	25	2.0	26	88	11	77	60	22	0	18	1.37
14192947--14192974	3	9.3	3	100	0	56	67	0	0	32	0.91
14199713--14199760	24	2.1	22	84	7	60	37	0	2	60	1.09
14204827--14204851	4	6.2	4	100	0	50	52	24	0	24	1.48
14206006--14206214	103	2.0	103	96	0	382	31	18	17	33	1.94
14207263--14207307	23	2.0	23	82	8	56	51	2	4	42	1.34
14209764--14209866	51	2.0	51	94	0	179	28	22	8	40	1.83
14211518--14211563	24	1.9	23	86	8	65	56	6	4	32	1.45
14216610--14216670	30	2.0	30	90	0	95	29	13	18	39	1.88
14219445--14219603	50	3.2	50	87	5	234	35	15	24	25	1.94
14220435--14220608	90	1.9	91	94	1	305	40	28	6	24	1.79
14221756--14221794	14	2.8	13	81	11	51	20	2	0	76	0.90
14222062--14222086	9	2.8	9	100	0	50	32	0	0	68	0.90
14224958--14225018	29	2.1	30	90	3	97	31	9	18	40	1.83
14241056--14241116	30	2.0	30	100	0	122	27	26	13	32	1.93
14244606--14244650	22	2.1	22	87	4	65	17	0	26	55	1.42
14245539--14245581	20	2.2	20	95	0	77	39	32	11	16	1.84
14246914--14247006	30	3.1	30	85	3	116	39	24	2	33	1.67
14250233--14250264	16	2.1	15	94	5	55	31	9	0	59	1.29
14250799--14250829	13	2.4	13	94	0	53	83	0	16	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14251706--14251760	12	4.8	11	80	10	58	74	0	25	0	0.82
14251701--14251741	13	3.3	13	86	10	59	78	0	21	0	0.76
14251699--14251757	24	2.5	24	83	8	75	76	0	23	0	0.79
14251670--14251752	30	2.7	30	85	5	96	77	0	20	2	0.89
14252067--14252287	111	2.0	112	88	0	327	28	20	12	38	1.89
14252687--14253074	98	4.0	97	84	4	424	36	16	27	19	1.93
14252990--14253271	92	3.0	95	86	4	365	35	16	27	20	1.94
14252891--14253242	190	1.9	190	81	4	442	36	15	28	19	1.93
14252846--14253215	141	2.6	144	82	6	405	35	16	27	20	1.94
14252777--14253313	239	2.2	242	83	5	660	35	16	27	20	1.94
14252680--14253313	49	13.1	48	72	8	367	35	16	27	20	1.94
14253584--14254251	38	16.9	38	70	13	228	33	23	17	25	1.96
14253584--14253733	78	1.9	78	93	0	255	32	24	18	24	1.97
14253609--14254166	116	4.7	114	76	11	475	34	21	17	25	1.96
14253621--14254208	78	7.5	79	75	10	415	34	22	17	26	1.96
14253618--14254146	40	13.4	41	70	14	238	34	22	16	26	1.95
14253715--14254208	161	3.1	158	77	10	375	34	21	18	25	1.96
14254129--14254258	42	3.1	41	81	9	149	30	29	16	24	1.96
14259124--14259172	23	2.1	23	92	0	80	4	32	8	55	1.48
14259459--14259598	49	2.8	49	78	2	145	45	10	9	35	1.70
14261709--14261747	3	12.7	3	94	5	69	33	0	0	66	0.92
14264195--14264228	13	2.7	13	90	4	52	11	8	0	79	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14264734--14264768	13	2.8	13	86	4	54	11	11	0	77	1.00
14279940--14280043	17	6.0	17	80	4	118	36	2	3	56	1.32
14279941--14280043	35	3.0	34	78	5	116	36	2	3	56	1.33
14279941--14280044	6	17.8	6	68	9	54	37	2	3	55	1.33
14279938--14280041	53	2.0	52	88	1	154	36	2	3	56	1.32
14281785--14282134	30	11.9	29	71	13	180	34	26	4	33	1.77
14281794--14282014	59	3.7	61	79	8	199	35	24	3	36	1.73
14281854--14282106	59	4.4	57	79	8	230	34	26	4	33	1.78
14281854--14282131	58	4.8	59	76	12	191	34	26	4	34	1.77
14281789--14282162	116	3.2	114	77	10	312	33	26	5	33	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144