genome.fa.s7.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  109  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25362654--25363061	49	8.2	49	75	8	288	39	22	25	12	1.89
25362755--25363090	147	2.2	149	76	9	326	37	22	26	13	1.91
25363324--25363469	78	1.9	78	85	5	206	23	28	21	26	1.99
25363321--25363461	39	3.6	39	74	9	126	21	28	22	26	1.99
25363527--25364044	201	2.5	200	89	2	757	33	20	24	21	1.97
25364395--25364451	26	2.2	26	87	6	80	33	0	8	57	1.29
25364416--25364469	17	3.4	16	80	16	67	40	0	5	53	1.24
25364416--25364502	30	2.7	33	81	10	92	41	1	8	49	1.40
25365141--25365197	3	18.7	3	78	10	62	61	0	1	36	1.07
25365144--25365194	24	2.2	23	92	3	84	60	0	1	37	1.08
25365147--25365198	13	4.2	13	82	7	63	63	0	1	34	1.06
25366331--25366715	30	13.1	30	78	5	286	38	22	4	34	1.74
25366361--25366648	59	4.9	59	81	5	316	38	20	3	37	1.71
25366361--25366669	89	3.5	88	80	5	322	39	20	3	36	1.70
25366689--25366832	59	2.4	59	79	2	155	29	22	5	42	1.76
25366807--25366880	28	2.6	28	84	2	85	28	28	10	32	1.91
25369395--25369454	28	2.1	28	82	11	70	28	10	25	36	1.88
25369495--25369633	60	2.3	59	81	7	154	38	5	22	33	1.76
25369530--25369637	29	3.7	30	75	16	109	37	4	24	34	1.76
25369528--25369642	60	1.9	61	87	5	171	35	5	23	35	1.77
25369615--25369744	29	4.4	30	87	5	176	38	1	26	33	1.66
25369620--25369744	59	2.1	59	86	5	173	39	1	24	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25370732--25370799	12	5.3	12	74	19	50	39	7	2	50	1.46
25371589--25371638	11	4.6	11	76	11	50	54	6	2	38	1.37
25372261--25372305	21	2.4	19	82	17	58	66	4	17	11	1.38
25372725--25372788	17	3.8	17	81	8	85	37	0	4	57	1.19
25372752--25372814	6	10.2	6	77	13	65	44	0	1	53	1.10
25372724--25372804	34	2.3	35	87	2	119	39	0	3	56	1.17
25372742--25372797	12	4.9	11	75	16	51	39	0	3	57	1.16
25373514--25373544	6	5.2	6	100	0	62	51	0	0	48	1.00
25373552--25373592	16	2.5	16	88	4	55	58	2	0	39	1.11
25374163--25374293	69	1.9	69	90	3	210	35	14	21	28	1.93
25374170--25374606	106	4.1	105	75	13	387	35	15	19	29	1.93
25374269--25374688	68	6.1	68	85	6	558	35	16	18	29	1.93
25374276--25374739	68	6.5	75	84	8	439	34	16	18	29	1.93
25374480--25374609	38	3.4	38	72	16	115	36	13	17	32	1.88
25374276--25374739	145	3.3	143	87	5	606	34	16	18	29	1.93
25375018--25375072	27	2.0	27	89	0	83	40	0	5	54	1.23
25375036--25375135	6	16.8	6	75	13	82	47	2	1	50	1.19
25375036--25375109	17	4.6	17	85	11	93	40	1	1	56	1.16
25375026--25375103	11	7.9	10	71	25	51	39	1	2	56	1.21
25376780--25377259	161	3.0	161	94	0	825	25	18	14	41	1.88
25377349--25377421	29	2.5	28	79	12	76	38	23	2	35	1.69
25377379--25377635	117	2.2	118	92	2	430	32	29	3	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25377379--25377671	117	2.5	117	89	3	394	31	30	4	33	1.78
25377379--25377635	59	4.4	59	89	1	401	32	29	3	34	1.76
25379448--25379740	29	9.9	30	72	16	202	33	28	2	35	1.72
25379452--25379743	58	5.0	57	81	12	290	34	28	2	34	1.72
25379580--25379769	59	3.3	55	78	11	168	31	25	6	36	1.81
25379998--25380197	97	2.0	99	86	5	282	28	17	15	39	1.89
25392736--25392760	3	8.3	3	100	0	50	32	0	0	68	0.90
25396986--25397014	8	3.6	8	100	0	58	79	0	0	20	0.74
25398020--25398072	16	3.3	16	81	0	61	30	3	9	56	1.49
25399010--25399081	16	4.5	16	89	0	117	37	5	29	27	1.79
25399063--25399156	44	2.1	44	86	7	127	30	5	26	37	1.79
25399249--25399394	58	2.5	55	81	13	168	50	1	2	45	1.24
25404541--25404616	38	2.1	37	87	7	111	40	23	9	26	1.84
25408758--25408817	6	10.5	6	71	10	54	43	3	1	51	1.28
25408758--25408817	17	3.5	17	83	0	75	43	3	1	51	1.28
25409661--25409691	12	2.6	12	94	0	53	48	0	0	51	1.00
25409635--25409693	15	4.1	15	74	12	61	52	0	1	45	1.10
25410524--25410626	30	3.5	29	78	5	100	42	22	0	33	1.60
25410556--25410627	29	2.5	30	80	13	87	43	25	0	31	1.55
25410585--25410860	58	4.7	57	80	7	279	34	27	2	35	1.71
25410585--25410897	116	2.7	116	80	5	346	33	27	3	36	1.74
25410580--25410890	29	10.6	29	65	16	106	34	26	2	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25410583--25410890	58	5.3	57	79	5	271	34	26	2	36	1.72
25423027--25423868	200	4.2	200	91	0	1274	36	20	22	19	1.95
25424234--25424293	17	3.5	17	79	0	66	40	3	5	51	1.40
25425117--25425159	15	2.9	15	82	0	50	58	0	2	39	1.11
25426093--25426264	60	2.9	58	77	10	152	38	22	5	34	1.76
25426164--25426239	31	2.6	29	80	4	89	40	23	5	30	1.77
25426155--25426515	59	6.2	59	79	11	297	35	25	3	35	1.74
25426243--25426346	30	3.5	29	72	17	88	33	23	4	38	1.76
25433466--25433540	39	1.9	38	94	2	132	13	10	8	68	1.40
25436417--25436464	24	2.1	23	88	7	71	47	8	0	43	1.33
25437556--25437726	29	5.8	29	71	10	139	35	5	23	34	1.79
25437625--25437726	30	3.4	29	74	11	107	31	4	26	37	1.78
25437555--25437727	59	2.9	60	85	5	226	35	6	23	34	1.81
25439584--25439650	17	3.8	17	79	11	71	49	7	2	40	1.46
25440620--25440841	39	5.7	39	70	2	142	27	20	28	23	1.99
25440597--25440852	78	3.3	78	86	1	298	26	17	30	25	1.98
25441200--25441304	48	2.1	49	91	3	167	10	29	22	37	1.88
25442218--25442316	20	5.1	20	77	13	109	1	16	0	82	0.72
25442216--25442316	46	2.2	46	84	11	129	0	16	0	82	0.73
25442213--25442314	17	5.7	18	75	20	81	0	16	0	82	0.73
25447296--25447549	58	4.4	58	81	7	209	34	6	27	31	1.83
25447401--25447628	59	3.9	56	82	5	226	35	4	24	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25447367--25447632	29	9.1	28	72	13	189	34	4	25	34	1.78
25449456--25449492	19	1.9	20	88	5	58	21	8	16	54	1.68
25449501--25449533	17	2.0	16	94	5	57	45	6	0	48	1.27
25449506--25449568	17	3.5	17	77	12	63	50	9	3	36	1.51
25458135--25458320	72	2.6	72	86	1	248	21	26	29	22	1.99
25459917--25460398	159	3.0	159	84	1	617	24	24	13	37	1.92
25461492--25461530	4	9.8	4	100	0	78	51	25	0	23	1.49
25464885--25465016	31	4.5	30	70	11	96	52	0	3	43	1.22
25468961--25468998	21	1.9	21	89	10	62	26	10	2	60	1.43
25474895--25474928	15	2.3	15	89	0	50	17	23	17	41	1.90
25478645--25478746	34	3.1	34	72	21	115	27	11	6	53	1.62
25478817--25478841	4	6.2	4	100	0	50	24	0	0	76	0.80
25482731--25482816	31	2.8	30	74	20	88	34	2	1	61	1.16
25482956--25483014	21	2.8	21	80	16	68	52	1	3	42	1.28
25483300--25483367	30	2.2	32	82	10	88	42	2	2	51	1.32
25485344--25485390	16	3.1	15	87	6	60	53	0	0	46	1.00
25486726--25486757	12	2.7	12	100	0	64	46	0	18	34	1.49
25488706--25488730	3	8.3	3	100	0	50	32	0	0	68	0.90
25493726--25493760	16	2.1	17	94	5	63	80	5	11	2	1.00
25498601--25498637	18	2.1	18	89	0	56	24	27	0	48	1.51
25503019--25503048	14	2.1	15	93	6	53	46	0	3	50	1.18
25507144--25507197	25	2.2	25	78	15	60	51	1	0	46	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25511847--25511888	23	1.9	23	85	9	61	38	2	14	45	1.58
25512386--25512433	23	2.1	23	88	3	71	47	2	0	50	1.12
25517801--25517868	6	11.5	6	78	9	50	26	25	0	48	1.51
25517820--25517868	18	2.7	18	87	6	73	22	28	0	48	1.50
25517822--25517864	12	3.5	13	87	9	56	23	30	0	46	1.52
25523287--25523354	6	11.5	6	78	9	50	26	25	0	48	1.51
25523306--25523354	18	2.7	18	87	6	73	22	28	0	48	1.50
25523308--25523350	12	3.5	13	87	9	56	23	30	0	46	1.52
25525766--25525803	12	3.2	12	85	11	51	86	0	0	13	0.56
25525766--25525798	9	3.6	9	95	4	57	87	0	0	12	0.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144