genome.fa.s7.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  62  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13137122--13137593	228	2.1	228	85	3	637	40	11	16	30	1.85
13136336--13138490	836	2.5	838	86	7	2824	40	11	17	30	1.85
13137852--13138769	241	3.7	244	83	6	945	40	11	17	31	1.85
13138690--13138738	22	2.2	22	78	7	55	46	4	24	24	1.69
13144346--13144377	16	1.9	17	93	6	57	9	15	0	75	1.05
13150154--13150188	17	2.1	17	89	10	54	57	0	31	11	1.34
13151755--13151788	17	1.9	18	88	5	52	70	0	17	11	1.16
13154788--13154888	29	3.4	30	80	4	100	51	0	0	46	1.14
13155695--13155739	20	2.1	22	88	8	67	44	2	2	51	1.26
13155711--13155779	29	2.4	30	78	7	88	52	1	0	46	1.09
13155916--13155960	22	2.0	22	100	0	90	53	17	8	20	1.70
13169178--13169286	43	2.5	43	79	2	112	35	11	17	35	1.85
13172465--13172510	18	2.5	19	82	13	60	67	4	4	23	1.27
13172504--13172569	13	5.2	12	72	16	53	74	6	1	18	1.10
13172480--13172667	100	1.8	100	84	7	252	65	7	5	20	1.39
13173363--13173848	45	10.7	45	79	4	471	26	16	24	32	1.96
13173909--13174416	49	10.4	49	73	5	283	18	22	16	42	1.89
13173922--13174416	98	5.1	98	73	5	392	18	21	17	42	1.89
13173881--13174416	196	2.7	193	81	5	569	19	21	16	41	1.90
13179533--13179603	26	2.7	26	80	4	72	61	9	8	19	1.52
13184686--13184838	52	2.9	52	91	0	261	26	15	22	35	1.93
13184811--13184865	27	2.0	27	100	0	110	25	14	21	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13184766--13184917	79	1.9	79	94	0	268	25	14	22	37	1.92
13184838--13184957	52	2.3	52	91	0	186	26	11	24	37	1.90
13184707--13184957	131	1.9	131	91	0	412	26	13	23	37	1.91
13189381--13189423	22	2.0	22	85	0	59	51	11	11	25	1.72
13193923--13194004	43	1.9	43	89	0	128	35	9	18	36	1.84
13199427--13199620	98	2.0	98	83	4	248	32	26	10	30	1.90
13204504--13204566	9	6.7	9	74	16	56	0	26	1	71	0.95
13204502--13204565	12	5.3	12	80	12	60	0	26	1	71	0.94
13204502--13204562	21	2.9	20	78	9	68	0	26	1	72	0.94
13213607--13213638	15	2.0	17	88	11	50	50	6	15	28	1.68
13241379--13241655	140	2.0	140	92	0	464	28	20	20	29	1.98
13242482--13242541	25	2.6	23	78	14	61	65	0	33	1	1.03
13242477--13242542	33	2.0	34	82	14	84	65	0	33	1	1.02
13249486--13249518	16	2.1	16	88	11	50	9	18	0	72	1.10
13254452--13254490	17	2.2	19	86	9	55	69	0	28	2	1.02
13261223--13261280	24	2.5	23	82	2	71	48	10	12	29	1.73
13264311--13264369	24	2.5	24	82	0	73	50	8	11	28	1.68
13265034--13265072	17	2.3	17	86	8	53	66	23	2	7	1.30
13265346--13265391	22	2.1	22	84	8	58	13	10	2	73	1.17
13268065--13268248	51	3.6	50	86	4	226	30	12	26	30	1.93
13269182--13269211	15	2.0	15	93	0	51	36	6	6	50	1.55
13275221--13275404	51	3.6	50	82	4	217	32	15	23	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13280242--13280287	23	2.0	23	91	0	74	23	19	21	34	1.96
13281019--13281056	10	3.8	10	83	10	51	0	21	0	78	0.74
13281019--13281058	19	2.1	19	90	4	62	0	22	0	77	0.77
13281128--13281157	11	2.7	11	94	0	51	6	16	0	76	0.99
13289518--13289551	17	2.0	17	88	0	50	64	5	5	23	1.38
13292363--13292387	6	4.2	6	100	0	50	84	0	16	0	0.63
13305407--13305446	21	1.9	21	90	10	64	7	17	0	75	1.03
13305417--13305458	13	3.3	13	76	6	50	9	14	0	76	1.02
13307484--13307522	18	2.2	18	86	9	53	43	0	0	56	0.99
13309117--13309170	27	2.0	27	100	0	108	29	7	7	55	1.55
13314723--13315380	251	2.6	251	86	1	883	41	10	18	29	1.83
13316669--13316722	27	2.0	28	82	10	67	64	1	25	7	1.30
13320662--13320710	21	2.2	22	82	7	55	53	8	8	30	1.60
13320662--13320705	21	2.0	23	82	8	56	47	9	9	34	1.67
13323650--13323711	22	2.8	22	80	0	79	32	12	24	30	1.93
13323625--13323802	91	2.0	91	87	2	259	37	14	21	26	1.91
13323743--13323803	21	2.8	22	82	5	79	26	14	27	31	1.95
13323811--13323846	18	2.0	18	100	0	72	44	5	11	38	1.63
13324019--13324066	14	3.4	14	85	0	69	43	4	4	47	1.41
13324056--13324099	22	2.0	22	95	0	79	36	9	2	52	1.46
13324240--13324859	235	2.6	235	83	7	711	41	10	16	30	1.83
13325634--13325689	24	2.3	24	84	0	67	50	10	12	26	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13325646--13325696	24	2.1	24	88	0	75	54	7	11	25	1.63
13327527--13327555	13	2.2	13	100	0	58	24	6	27	41	1.80
13327524--13327561	13	2.6	14	84	16	51	26	7	23	42	1.81
13327954--13343938	610	26.0	609	78	10	14150	39	11	17	31	1.86
13338494--13339062	253	2.2	253	86	2	802	43	11	17	28	1.83
13337858--13339671	862	2.1	861	86	2	2473	40	11	17	30	1.85
13338710--13343938	609	8.7	609	91	3	7535	39	11	17	31	1.85
13344489--13344584	41	2.3	41	90	0	147	37	25	6	31	1.81
13344576--13344612	17	2.2	17	90	0	56	45	24	13	16	1.83
13347683--13347721	18	2.2	17	86	13	53	64	23	2	10	1.37
13349996--13350606	251	2.5	247	84	2	755	40	11	16	31	1.85
13350569--13350611	22	2.0	22	95	0	77	44	0	32	23	1.54
13351304--13351332	2	14.5	2	100	0	58	51	0	0	48	1.00
13350850--13352001	263	4.6	252	83	6	1284	40	10	17	31	1.83
13351321--13352001	255	2.7	246	82	6	777	40	10	17	31	1.84
13352268--13353105	247	3.4	245	88	2	1155	42	9	18	29	1.81
13353371--13353405	17	1.9	19	88	11	56	60	0	31	8	1.27
13353325--13354400	242	4.5	241	79	8	1108	42	10	17	29	1.82
13353764--13354208	225	2.0	224	88	2	655	42	10	17	29	1.83
13354633--13355756	245	4.6	241	86	3	1466	40	10	18	31	1.83
13354633--13355750	488	2.3	484	85	3	1537	40	10	17	31	1.83
13355969--13356603	245	2.6	239	83	3	775	40	10	17	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13355138--13357431	848	2.7	849	87	2	3161	40	10	17	31	1.84
13356822--13357460	250	2.5	250	84	3	791	42	10	16	29	1.82
13357282--13357648	198	1.9	197	81	0	455	41	12	15	30	1.85
13357886--13358461	245	2.4	245	88	3	867	40	10	17	31	1.83
13358224--13358679	219	2.1	221	87	1	657	40	11	15	31	1.84
13360865--13361423	243	2.3	243	92	0	929	38	11	17	32	1.85
13367294--13367414	49	2.5	49	98	0	233	46	16	5	31	1.71
13368921--13369004	19	4.2	20	74	10	82	48	15	5	29	1.68
13368929--13368975	20	2.4	19	86	6	67	51	14	4	29	1.62
13371097--13371137	21	2.0	21	90	0	64	43	7	12	36	1.70
13390932--13390976	6	7.5	6	89	0	63	22	31	0	46	1.52
13396476--13396583	54	2.0	54	100	0	216	33	24	12	29	1.92
13396589--13396633	6	7.5	6	89	0	63	22	31	0	46	1.52
13400750--13400798	23	2.2	23	81	3	55	48	6	10	34	1.62
13400881--13400981	20	4.9	20	79	15	100	50	10	5	32	1.62
13403801--13403848	17	2.7	17	90	6	69	18	37	16	27	1.92
13404094--13404120	7	3.9	7	100	0	54	0	55	0	44	0.99
13409404--13409439	6	6.0	6	93	0	63	16	0	47	36	1.47
13410286--13410424	68	2.0	68	97	0	260	41	17	14	26	1.87
13414743--13414855	59	1.9	58	82	8	140	36	6	14	43	1.70
13420020--13420064	3	15.0	3	100	0	90	66	0	0	33	0.92
13420063--13420124	3	20.7	3	89	0	97	35	1	27	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13421475--13421507	5	6.4	5	93	6	57	81	0	0	18	0.68
13421626--13421658	17	1.9	17	93	0	57	42	12	9	36	1.74
13427784--13427831	16	2.8	17	84	6	62	2	20	2	75	1.02
13429639--13429693	24	2.3	24	96	0	101	23	21	25	29	1.99
13432586--13432625	20	2.0	20	90	0	62	22	12	32	32	1.91
13446366--13446426	23	2.7	23	78	0	68	16	8	42	32	1.78
13447372--13447419	24	2.0	24	91	0	78	27	18	22	31	1.97
13454971--13455060	21	4.3	21	91	1	128	11	24	10	54	1.66
13465930--13465987	22	2.6	22	88	0	89	37	17	13	31	1.89
13481019--13481057	20	2.0	20	89	0	60	25	35	23	15	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144