genome.fa.s7.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  45  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10200459--10202341	770	2.4	770	87	3	2652	28	17	14	39	1.89
10202218--10202463	62	4.0	62	93	1	406	28	19	15	37	1.91
10202218--10202463	122	2.0	124	92	1	415	28	19	15	37	1.91
10202075--10202799	399	1.8	397	86	1	1049	28	17	14	39	1.90
10202614--10202799	62	3.0	62	84	2	225	27	17	16	38	1.91
10202953--10203139	62	3.0	61	82	1	214	29	17	15	37	1.91
10203290--10203478	62	3.0	62	88	0	261	26	18	15	39	1.90
10202277--10203753	676	2.2	675	87	2	2121	28	17	15	39	1.90
10202277--10203753	337	4.4	340	87	3	2018	28	17	15	39	1.90
10203627--10203753	62	2.0	62	89	0	191	29	18	14	37	1.91
10203352--10204800	278	5.2	277	93	1	2237	28	17	14	39	1.89
10203905--10204031	62	2.0	62	90	0	200	29	18	15	37	1.92
10204183--10204309	62	2.0	62	89	0	191	29	18	14	37	1.91
10204461--10204587	62	2.0	62	87	0	182	29	17	14	38	1.90
10204523--10205021	216	2.3	217	83	5	634	30	16	14	38	1.88
10204960--10205207	62	4.0	62	88	0	361	26	19	16	37	1.92
10205081--10205697	276	2.2	275	81	4	706	26	17	15	41	1.88
10205852--10206161	62	5.0	62	94	0	530	27	18	15	38	1.91
10206313--10206501	62	3.0	61	85	3	243	28	17	15	38	1.91
10205973--10207458	340	4.4	340	87	1	2052	28	17	15	39	1.89
10206655--10206842	62	3.0	62	84	0	243	29	17	15	37	1.91
10206994--10207182	62	3.0	62	86	3	238	27	18	15	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10207333--10207458	62	2.0	61	86	4	173	30	15	15	38	1.88
10207056--10208226	278	4.2	277	91	1	1690	28	17	14	39	1.88
10207610--10207736	62	2.0	62	90	0	200	29	18	15	37	1.92
10207888--10208011	63	2.0	62	88	1	185	27	17	16	38	1.91
10207950--10208890	215	4.3	216	70	14	636	29	17	13	39	1.88
10208386--10208607	62	3.6	60	79	8	232	25	18	15	40	1.90
10208833--10209018	62	3.0	61	91	1	282	26	16	18	38	1.91
10209169--10209356	61	3.0	62	89	3	272	27	18	15	37	1.92
10208507--10209627	338	3.4	334	86	5	1416	29	16	14	39	1.88
10209507--10209627	62	2.0	62	91	0	197	32	18	14	34	1.91
10209231--10209791	277	2.0	276	87	1	793	29	16	14	39	1.89
10209805--10209960	62	2.5	62	86	1	206	26	20	16	37	1.93
10210328--10210507	62	2.9	62	89	0	288	23	20	17	38	1.93
10210663--10210907	62	4.0	62	86	1	348	26	20	16	37	1.93
10210347--10211246	401	2.2	400	92	0	1469	25	20	16	38	1.93
10211099--10211246	62	2.4	62	84	0	179	25	20	16	37	1.93
10210754--10211467	339	2.1	340	84	3	911	27	19	15	37	1.92
10211188--10211683	215	2.3	216	82	3	615	30	17	14	37	1.90
10211629--10211801	62	2.8	62	95	0	301	25	19	16	38	1.92
10210849--10212016	555	2.1	555	83	4	1446	27	18	15	37	1.91
10211417--10212485	340	3.2	338	82	4	1244	27	19	14	38	1.91
10212258--10212908	62	10.6	62	91	1	1042	25	19	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10212258--10212908	122	5.3	123	91	3	1024	25	19	15	39	1.91
10212270--10212908	245	2.6	245	94	0	1098	26	19	15	39	1.91
10213095--10213253	62	2.6	62	83	1	176	25	22	15	36	1.94
10213191--10213683	214	2.3	215	83	4	602	29	18	14	37	1.90
10213629--10213801	62	2.8	62	94	0	301	27	19	15	37	1.92
10213959--10214202	62	3.9	62	84	3	321	26	18	16	38	1.91
10213405--10214146	339	2.2	341	84	3	962	28	18	15	37	1.91
10214024--10214763	340	2.2	339	83	4	943	26	18	15	39	1.91
10214391--10214548	62	2.5	62	85	0	208	25	18	16	39	1.91
10214485--10214978	215	2.3	216	81	5	545	30	17	14	38	1.89
10214918--10215281	62	5.9	62	90	1	507	26	19	16	38	1.92
10215439--10215628	63	3.0	62	82	2	229	27	18	16	37	1.92
10215099--10215881	341	2.3	340	84	5	1076	27	18	14	39	1.89
10216140--10216274	61	2.2	60	82	5	164	29	17	16	36	1.92
10216424--10216608	60	3.1	59	87	4	246	29	16	15	38	1.89
10216757--10216882	62	2.0	62	87	3	182	28	17	15	38	1.91
10216818--10217316	215	2.3	217	83	5	634	30	16	14	39	1.88
10217255--10217502	62	4.0	62	87	3	347	27	18	16	37	1.92
10217376--10217987	276	2.2	276	80	5	668	26	17	14	40	1.89
10218145--10218332	62	3.0	62	92	3	313	28	18	15	37	1.92
10216424--10218332	892	2.1	891	86	4	2688	28	17	14	39	1.89
10218145--10218332	64	3.0	64	94	1	317	28	18	15	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10218204--10218893	284	2.5	278	87	5	989	27	18	15	38	1.91
10218767--10218954	62	3.0	60	81	9	220	26	19	16	37	1.92
10218515--10219232	339	2.1	341	85	5	934	27	18	14	38	1.90
10219111--10219232	62	2.0	62	93	0	208	24	18	18	39	1.92
10217929--10219446	625	2.5	619	82	5	1775	28	18	14	39	1.90
10218834--10219446	277	2.2	276	87	2	856	28	18	14	39	1.89
10218891--10219938	492	2.1	491	85	4	1405	28	17	14	38	1.90
10219904--10220062	62	2.6	62	86	2	203	25	19	16	38	1.92
10220217--10220340	62	2.0	62	95	3	223	26	19	16	37	1.92
10220709--10220832	62	2.0	62	90	0	194	27	19	16	36	1.93
10220993--10221149	62	2.5	62	87	0	206	24	19	16	38	1.92
10221531--10221764	62	3.8	62	93	0	371	26	20	14	38	1.92
10221943--10222102	62	2.6	62	87	4	232	27	17	15	39	1.90
10221301--10222102	401	2.0	401	83	5	1007	28	17	15	38	1.91
10221579--10222316	338	2.2	337	88	3	1099	27	17	15	40	1.89
10222039--10222518	214	2.2	215	83	1	604	28	17	15	39	1.89
10222471--10222718	62	4.0	62	83	4	302	26	19	14	39	1.90
10222471--10222718	124	2.0	124	87	3	356	26	19	14	39	1.90
10222899--10223058	62	2.6	62	84	4	205	27	16	16	39	1.90
10222254--10223058	402	2.0	401	82	4	987	28	17	15	38	1.90
10222532--10223272	340	2.2	339	87	3	1044	27	17	15	40	1.89
10220709--10223779	956	3.2	953	94	1	5274	28	17	15	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10222995--10223488	214	2.3	214	82	3	580	29	17	15	38	1.90
10223427--10223672	62	4.0	62	91	4	365	28	18	14	38	1.90
10223610--10223960	181	1.9	179	83	3	445	29	17	13	39	1.88
10223785--10224284	215	2.3	215	80	5	546	30	17	14	37	1.90
10224230--10224391	62	2.6	62	84	5	220	27	14	19	38	1.91
10224560--10224748	62	3.0	62	85	0	252	28	16	16	38	1.91
10224013--10225303	340	3.8	341	89	2	1820	28	16	15	39	1.90
10224900--10225088	62	3.0	62	91	0	297	26	17	16	39	1.91
10225024--10225518	215	2.3	214	86	5	660	29	16	14	39	1.88
10225454--10225580	62	2.0	62	87	0	182	29	17	14	38	1.90
10224622--10225858	278	4.5	276	72	12	1123	27	16	15	40	1.89
10225732--10225920	62	3.0	61	86	3	270	26	17	17	38	1.92
10225454--10226133	340	2.0	338	88	3	999	27	16	15	40	1.89
10225856--10226351	215	2.3	216	83	4	637	29	17	14	38	1.89
10225516--10227246	555	3.1	554	89	2	2510	28	17	14	39	1.89
10226290--10226475	62	3.0	63	89	3	297	25	18	17	38	1.93
10225454--10227926	895	2.8	889	74	12	2471	28	16	14	39	1.89
10226411--10226906	215	2.3	216	87	2	712	30	17	13	38	1.88
10226845--10227030	62	3.0	62	91	0	291	26	16	18	38	1.92
10227182--10227370	62	3.0	62	90	1	281	27	18	16	37	1.92
10226627--10228049	340	4.2	340	88	3	1920	29	17	14	39	1.89
10227522--10227710	62	3.0	62	90	1	281	27	17	15	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10227865--10228105	63	3.9	61	83	6	306	25	18	15	40	1.90
10227522--10228388	401	2.2	402	83	5	1056	28	18	15	38	1.91
10227984--10228603	277	2.2	277	82	4	766	27	18	15	38	1.91
10228358--10228819	215	2.1	216	86	3	655	29	18	14	37	1.91
10228758--10228943	62	3.0	63	89	3	297	25	18	17	38	1.93
10229190--10229407	62	3.5	62	87	2	323	24	18	16	40	1.90
10229666--10230131	215	2.2	216	84	2	616	28	18	14	38	1.90
10230078--10230249	62	2.8	62	95	0	299	26	19	16	38	1.92
10230430--10230581	62	2.5	62	85	3	200	24	21	17	37	1.94
10229604--10232357	888	3.1	889	92	1	4623	27	18	15	38	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144