genome.fa.s7.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  52  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10408851--10409018	62	2.7	60	84	5	210	26	15	18	39	1.90
10407382--10413020	953	5.8	951	71	14	3367	28	17	14	39	1.88
10408508--10409581	338	3.2	336	88	3	1559	27	17	14	40	1.88
10409186--10409374	62	3.0	61	83	6	229	26	16	16	40	1.89
10409310--10409801	215	2.3	212	83	5	627	31	17	12	38	1.87
10409740--10409987	62	4.0	62	93	0	406	27	19	15	37	1.92
10410142--10410309	62	2.7	60	84	5	210	26	15	18	39	1.90
10409799--10410872	338	3.2	336	88	3	1543	27	17	14	40	1.88
10410477--10410665	62	3.0	61	83	4	236	26	16	15	40	1.89
10410601--10411092	215	2.3	212	83	5	627	31	17	12	38	1.87
10411031--10411278	62	4.0	62	93	0	406	27	19	15	37	1.92
10411433--10411600	62	2.7	60	84	5	210	26	15	18	39	1.90
10411090--10412166	338	3.2	337	89	2	1595	27	17	14	40	1.89
10411768--10411956	62	3.0	61	83	6	238	26	16	16	40	1.90
10411892--10412386	215	2.3	215	84	5	653	31	17	12	38	1.87
10412325--10412572	62	4.0	62	93	0	406	27	19	15	37	1.92
10412728--10412913	62	3.0	62	86	0	246	26	16	17	39	1.91
10412949--10413097	79	1.9	79	87	5	221	33	21	10	34	1.88
10413147--10413394	62	4.0	62	91	1	390	26	18	15	38	1.91
10413596--10413761	51	3.0	52	73	12	131	23	17	16	42	1.88
10413671--10413908	62	3.9	62	85	6	313	27	17	16	38	1.91
10413671--10413908	123	1.9	124	85	4	329	27	17	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10414061--10414248	62	3.0	61	89	5	272	27	18	16	38	1.92
10413156--10414169	514	2.0	514	92	2	1716	27	17	15	39	1.90
10413721--10414526	339	2.4	339	87	3	1174	28	17	14	40	1.88
10414122--10415082	278	3.5	278	86	2	1353	28	17	13	40	1.88
10414677--10414803	62	2.0	62	90	0	200	30	18	14	36	1.91
10414955--10415203	62	4.0	62	85	5	326	28	18	14	39	1.89
10414955--10415187	122	1.9	124	87	1	344	27	17	15	39	1.89
10414677--10417092	400	6.0	402	73	12	1953	27	17	14	39	1.90
10415355--10415543	62	3.0	62	87	0	279	26	16	17	38	1.92
10415577--10415727	79	1.9	79	85	8	209	34	22	10	32	1.88
10415778--10416026	62	4.0	62	89	0	363	28	18	15	38	1.91
10416185--10416479	62	4.9	62	79	9	351	25	17	17	38	1.92
10416187--10416403	113	1.9	113	93	0	371	23	17	18	40	1.91
10416631--10416817	62	3.0	60	87	4	250	28	18	15	37	1.91
10416967--10417092	61	2.0	62	83	1	155	28	19	15	36	1.92
10417244--10417370	62	2.0	62	95	0	227	29	18	14	36	1.92
10416691--10417648	278	3.5	278	87	1	1357	28	18	13	39	1.88
10417522--10417771	62	4.0	62	85	1	313	27	18	14	40	1.89
10417922--10418110	62	3.0	62	88	0	288	26	19	16	37	1.92
10418251--10418377	62	2.0	62	92	0	209	29	17	15	37	1.91
10418529--10418778	62	4.0	62	89	0	349	29	17	15	37	1.90
10418930--10419118	62	3.0	62	87	3	265	26	16	16	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10416967--10419225	340	6.7	340	71	13	1681	27	17	14	40	1.89
10419152--10419301	79	1.9	79	86	8	216	35	22	10	32	1.87
10419352--10419599	62	4.0	62	94	1	417	26	18	15	39	1.91
10419751--10419928	63	2.8	63	88	0	259	28	18	16	37	1.92
10419751--10419940	62	3.0	62	87	0	281	28	18	16	36	1.92
10419876--10420369	213	2.3	217	82	5	594	29	18	14	37	1.90
10420308--10420555	62	4.0	61	88	4	327	25	20	16	37	1.93
10420491--10420979	215	2.3	216	82	5	587	30	19	14	36	1.91
10420926--10421172	62	4.0	62	91	0	388	26	19	16	37	1.93
10419751--10421728	617	3.2	617	92	1	3252	28	18	14	37	1.91
10421108--10421604	215	2.3	215	82	6	594	29	18	14	37	1.90
10421569--10421728	62	2.6	62	89	0	230	26	19	16	38	1.92
10420982--10422211	557	2.2	556	91	2	2031	28	18	14	38	1.90
10421664--10422142	215	2.2	217	82	5	576	29	17	15	38	1.90
10422373--10422560	62	3.0	61	82	3	243	26	19	17	37	1.93
10422496--10422993	215	2.3	217	82	4	605	29	18	14	37	1.90
10422932--10423179	62	4.0	61	88	3	343	25	20	16	37	1.93
10423469--10423665	62	3.2	62	87	4	290	27	19	15	37	1.92
10422975--10423956	486	2.0	486	95	1	1747	29	19	13	37	1.91
10423601--10424096	215	2.3	217	82	5	596	30	18	14	37	1.90
10424036--10424198	60	2.7	62	90	2	251	23	18	16	41	1.90
10424911--10425097	61	3.0	60	82	3	239	25	19	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10425034--10425525	214	2.3	213	80	6	557	29	18	14	38	1.90
10424094--10425587	827	1.8	813	90	4	2406	27	18	15	38	1.91
10425465--10425704	61	4.0	61	87	6	287	25	20	15	39	1.92
10425477--10425704	123	1.9	117	84	8	298	24	20	15	39	1.91
10433167--10433191	3	8.3	3	100	0	50	36	0	0	64	0.94
10433249--10433277	3	9.7	3	100	0	58	34	0	0	65	0.93
10433497--10434407	43	21.0	43	72	13	516	19	26	35	18	1.95
10433693--10434416	86	8.3	85	77	12	641	19	26	35	17	1.95
10433659--10433922	130	2.0	129	81	5	309	20	27	34	17	1.95
10433488--10434153	302	2.2	301	90	2	1032	20	26	34	17	1.95
10433497--10434320	129	6.3	130	76	11	572	19	26	35	17	1.95
10434084--10434205	53	2.3	53	91	2	194	24	27	34	13	1.93
10433693--10434416	172	4.2	173	82	9	744	19	26	35	17	1.95
10435053--10436211	43	27.4	43	75	13	856	16	28	35	19	1.94
10435054--10436211	129	9.1	129	75	11	982	16	28	35	19	1.94
10435590--10435822	75	2.9	76	81	8	236	18	24	36	20	1.95
10443622--10443646	3	8.3	3	100	0	50	36	0	0	64	0.94
10443706--10443731	3	8.7	3	100	0	52	34	0	0	65	0.93
10443951--10444861	43	21.0	43	72	13	516	19	26	35	18	1.95
10444147--10444870	86	8.3	85	77	12	641	19	26	35	17	1.95
10444113--10444376	130	2.0	129	81	5	309	20	27	34	17	1.95
10443942--10444607	302	2.2	301	90	2	1032	20	26	34	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10443951--10444774	129	6.3	130	76	11	572	19	26	35	17	1.95
10444538--10444659	53	2.3	53	91	2	194	24	27	34	13	1.93
10444147--10444870	172	4.2	173	82	9	744	19	26	35	17	1.95
10445507--10446665	43	27.4	43	75	13	856	16	28	35	19	1.94
10445508--10446665	129	9.1	129	75	11	982	16	28	35	19	1.94
10446044--10446276	75	2.9	76	81	8	236	18	24	36	20	1.95
10460429--10460453	3	8.3	3	100	0	50	36	0	0	64	0.94
10460514--10460542	3	9.7	3	100	0	58	34	0	0	65	0.93
10460762--10461672	43	21.0	43	72	13	516	19	26	35	18	1.95
10460958--10461681	86	8.3	85	77	12	641	19	26	35	17	1.95
10460924--10461187	130	2.0	129	81	5	309	20	27	34	17	1.95
10460753--10461418	302	2.2	301	90	2	1032	20	26	34	17	1.95
10460762--10461585	129	6.3	130	76	11	572	19	26	35	17	1.95
10461349--10461470	53	2.3	53	91	2	194	24	27	34	13	1.93
10460958--10461681	172	4.2	173	82	9	744	19	26	35	17	1.95
10462317--10463475	43	27.4	43	75	13	847	16	28	35	19	1.94
10462318--10463475	129	9.1	129	75	11	973	16	28	35	19	1.94
10462854--10463086	75	2.9	76	80	8	218	18	24	36	20	1.95
10472048--10472940	43	21.2	43	69	15	412	19	27	35	17	1.94
10472159--10472931	130	6.1	130	74	13	431	19	26	35	17	1.94
10472289--10472603	86	3.7	86	86	5	467	20	26	35	17	1.94
10472289--10472604	171	1.9	170	93	0	542	20	26	36	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10472646--10472813	85	2.0	87	89	7	263	20	27	35	17	1.95
10473577--10474737	43	27.4	43	75	14	863	16	27	35	19	1.94
10473577--10474737	86	13.7	86	81	7	989	16	27	35	19	1.94
10473577--10474737	129	9.1	129	75	11	1013	16	27	35	19	1.94
10474114--10474357	76	3.1	76	79	12	292	18	25	37	19	1.94
10473880--10474357	162	2.9	162	88	4	679	18	25	37	18	1.94
10473880--10474357	248	1.9	253	87	6	702	18	25	37	18	1.94
10474378--10474453	35	2.2	35	85	0	107	15	31	31	21	1.94
10474417--10474737	173	1.9	172	92	2	545	14	29	36	19	1.91
10487886--10487922	3	12.3	3	100	0	74	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144