genome.fa.s7.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  82  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18458117--18458142	8	3.2	8	100	0	52	61	0	0	38	0.96
18458117--18458223	34	2.7	41	75	23	129	43	2	6	46	1.44
18458125--18458211	34	2.6	34	96	0	156	41	3	8	47	1.50
18458200--18458271	10	6.8	10	72	17	56	51	1	1	45	1.18
18458201--18458297	22	4.3	22	66	26	60	49	1	1	48	1.14
18457910--18458221	148	2.1	146	80	8	348	45	3	5	44	1.45
18458209--18458312	32	3.1	32	78	15	129	46	2	1	49	1.28
18461490--18461537	20	2.3	21	82	3	62	39	10	43	6	1.64
18461926--18461998	29	2.4	30	77	11	78	43	0	2	53	1.15
18461942--18462035	23	4.2	23	88	6	124	44	0	2	53	1.12
18461926--18462028	52	2.0	52	83	7	129	43	0	1	54	1.11
18462059--18462110	12	4.0	12	74	16	50	28	3	0	67	1.08
18462195--18462528	170	2.0	168	89	2	517	31	23	14	29	1.94
18463058--18463145	41	2.1	41	85	0	113	26	27	23	22	2.00
18463157--18463245	41	2.2	41	89	4	135	24	25	26	22	2.00
18463188--18463307	64	1.9	62	86	6	170	25	29	25	20	1.99
18463157--18463348	103	1.8	105	85	4	273	25	27	25	22	2.00
18463252--18463366	39	2.8	40	88	7	171	21	29	24	24	1.99
18463351--18463490	40	3.5	40	81	3	165	17	25	19	37	1.94
18463374--18463487	40	2.8	40	86	2	167	19	24	20	35	1.95
18464723--18464774	14	3.6	14	82	12	61	63	5	9	21	1.45
18464925--18465165	58	4.2	58	82	4	265	36	2	26	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18464889--18465165	29	9.6	29	80	7	226	36	3	25	34	1.73
18466617--18466668	17	3.0	17	91	2	86	57	1	0	40	1.10
18466616--18466663	6	8.3	6	77	9	55	54	2	0	43	1.12
18469745--18469803	29	2.0	29	100	0	118	37	20	13	28	1.91
18477327--18477355	14	2.1	14	93	6	51	13	0	31	55	1.39
18478806--18478881	36	2.2	35	81	13	86	36	6	17	39	1.75
18480062--18480096	16	2.1	17	89	5	54	40	17	0	42	1.49
18480092--18480145	19	2.8	20	71	23	53	59	0	7	33	1.25
18481162--18481205	21	2.1	21	86	0	61	56	9	2	31	1.43
18481288--18481330	20	2.0	21	86	8	61	67	2	0	30	1.03
18481323--18481375	9	5.7	9	73	8	52	58	0	9	32	1.30
18481310--18481410	10	10.3	10	68	13	59	62	0	5	31	1.19
18481303--18481384	19	4.3	19	78	10	87	62	0	6	31	1.20
18486573--18486607	10	3.5	10	88	0	52	34	2	0	62	1.10
18487129--18487158	2	15.0	2	100	0	60	0	50	0	50	1.00
18505657--18505791	29	4.6	30	77	12	138	34	25	6	34	1.82
18505663--18505799	58	2.4	59	80	11	158	33	23	6	36	1.81
18509694--18509736	17	2.6	17	85	7	54	76	0	23	0	0.78
18509782--18509829	5	9.0	5	86	8	60	77	2	20	0	0.88
18509782--18509836	10	5.9	9	78	18	51	74	1	23	0	0.91
18510702--18510749	14	3.5	14	78	16	64	81	0	18	0	0.70
18510705--18510748	6	6.8	6	80	14	52	81	0	18	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18510695--18510749	27	2.2	26	90	9	87	80	0	20	0	0.72
18511585--18511876	49	6.0	49	74	4	243	36	16	26	20	1.93
18511604--18511868	146	1.8	146	85	3	372	36	18	25	20	1.94
18511604--18511876	97	2.8	96	76	9	266	36	17	25	20	1.94
18512194--18512286	48	1.9	48	82	0	114	39	19	21	19	1.92
18512159--18512403	133	1.8	133	88	0	373	37	19	22	20	1.94
18512326--18512449	48	2.6	48	84	0	158	35	16	21	25	1.95
18512370--18512462	48	1.9	48	86	0	132	38	16	22	22	1.92
18514342--18514430	29	3.1	28	78	10	81	32	25	6	34	1.82
18514341--18514417	29	2.6	29	81	6	84	35	28	6	29	1.82
18521884--18522764	440	2.0	440	89	0	1334	22	18	28	30	1.97
18528135--18528169	16	2.1	17	89	5	54	42	2	0	54	1.15
18537690--18537721	15	2.1	15	100	0	64	62	6	12	18	1.50
18537983--18538032	19	2.6	19	81	9	57	40	0	2	58	1.10
18538288--18539010	361	2.0	362	90	1	1146	35	15	14	34	1.88
18540444--18540550	46	2.3	44	78	13	108	23	14	26	36	1.92
18540465--18540586	46	2.7	46	82	0	136	25	13	25	36	1.92
18542188--18542239	25	2.1	25	92	0	86	59	9	9	21	1.57
18543869--18543941	30	2.4	31	81	9	78	39	0	2	57	1.13
18550379--18550595	107	2.0	107	99	0	425	47	15	10	26	1.78
18551140--18551171	16	2.0	16	93	0	55	59	9	0	31	1.29
18554300--18554388	30	3.0	30	78	6	90	42	5	17	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18562941--18563025	43	2.0	43	100	0	170	38	16	23	21	1.92
18563573--18563657	28	3.0	28	84	0	107	40	22	11	25	1.88
18563811--18563843	17	1.9	17	93	0	57	30	12	27	30	1.92
18565965--18566005	18	2.3	18	95	0	73	48	9	31	9	1.69
18570955--18571011	19	3.0	19	89	0	69	31	19	28	21	1.97
18577121--18577221	36	2.8	36	95	0	184	26	25	14	32	1.95
18579282--18579386	19	5.5	19	89	0	138	41	16	23	18	1.89
18598257--18598284	4	7.0	4	100	0	56	75	0	0	25	0.81
18599719--18599801	39	2.1	40	95	4	150	54	9	2	33	1.46
18600558--18600600	16	2.8	16	85	3	61	46	6	0	46	1.30
18601981--18602146	69	2.4	70	84	6	196	33	16	7	42	1.75
18601593--18602234	349	1.8	348	84	3	880	35	16	6	41	1.75
18607123--18607163	16	2.5	17	80	11	59	31	2	0	65	1.05
18611489--18611537	21	2.3	21	96	0	89	14	38	16	30	1.88
18632988--18633036	18	2.7	18	80	0	62	65	0	4	30	1.11
18634183--18634541	188	1.9	187	85	5	501	35	22	8	33	1.84
18637165--18637193	1	29.0	1	100	0	58	0	0	100	0	0.00
18639052--18639331	146	1.9	145	80	7	323	26	2	20	50	1.62
18647141--18647181	21	1.9	22	85	5	57	29	26	26	17	1.97
18653557--18653682	26	4.8	26	81	6	148	25	23	23	27	2.00
18653557--18653683	51	2.4	51	84	8	166	25	23	23	27	2.00
18664248--18664279	15	2.0	17	88	11	50	12	34	9	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18664555--18664584	15	2.0	15	100	0	60	26	13	20	40	1.89
18669936--18669998	23	2.7	24	87	5	92	26	26	22	23	2.00
18674370--18674423	23	2.3	24	96	3	101	25	25	25	22	2.00
18677895--18677942	19	2.5	20	80	12	66	54	2	0	43	1.12
18679375--18679436	6	9.8	6	77	10	52	20	0	4	74	1.00
18679381--18679436	14	4.2	13	76	17	53	21	0	5	73	1.03
18679376--18679436	26	2.4	25	83	5	77	21	0	4	73	1.01
18684879--18684912	8	4.1	8	85	7	50	82	0	2	14	0.79
18684881--18684912	17	1.9	16	93	6	55	81	0	3	15	0.82
18685792--18685864	5	14.4	5	78	21	73	20	5	0	73	1.02
18685777--18685872	28	3.4	26	72	23	72	19	7	1	71	1.15
18685792--18685872	12	7.3	11	75	19	62	20	4	0	74	1.01
18685796--18685907	18	6.1	18	71	16	52	24	4	1	69	1.16
18685841--18685887	15	3.2	14	85	8	58	25	2	0	72	0.96
18687066--18687113	25	2.0	24	88	12	71	18	4	4	72	1.17
18688113--18688145	13	2.5	13	90	9	50	84	0	15	0	0.61
18688379--18688417	19	2.1	19	100	0	78	20	0	30	48	1.50
18696234--18696547	80	3.9	80	82	0	378	34	24	19	22	1.97
18699307--18699358	22	2.5	20	76	17	52	55	1	1	40	1.22
18699381--18699435	25	2.2	25	81	12	60	47	5	1	45	1.36
18699389--18699482	37	2.5	35	77	17	91	53	3	2	41	1.29
18699933--18699974	9	4.7	9	90	0	57	19	40	0	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18714215--18714400	11	17.8	11	64	27	68	53	1	1	43	1.20
18714216--18714383	17	9.6	16	65	24	65	53	1	1	43	1.18
18714219--18714336	38	2.9	38	73	16	105	51	1	1	44	1.21
18721084--18721193	54	2.0	54	98	0	211	32	21	21	23	1.98
18726408--18726482	12	6.2	12	73	17	75	61	0	37	1	1.05
18741180--18741278	24	4.1	24	86	0	135	25	23	23	28	2.00
18749381--18749497	62	1.9	61	86	5	166	52	5	2	40	1.37
18749476--18749565	6	14.8	6	71	20	55	53	3	0	43	1.17
18749476--18749574	20	5.3	18	71	15	69	53	4	0	42	1.19
18749488--18749565	25	3.2	25	78	12	81	52	3	0	43	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144