genome.fa.s7.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  4  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
911104--911297	30	6.4	30	79	5	187	37	5	18	38	1.74
911092--911293	90	2.2	91	80	5	230	35	5	19	39	1.75
911104--911311	60	3.4	61	83	4	217	37	5	19	38	1.74
918337--918499	68	2.4	68	83	0	209	27	22	14	34	1.94
926040--926117	39	2.0	39	87	5	113	21	35	11	30	1.89
930727--930809	30	2.7	31	83	3	105	28	3	6	61	1.37
930825--930866	6	6.8	6	91	5	57	16	0	9	73	1.08
930825--930866	19	2.3	19	87	4	59	16	0	9	73	1.08
933114--933148	17	2.1	17	100	0	70	42	5	0	51	1.25
933171--933196	13	2.0	13	100	0	52	61	0	0	38	0.96
934563--934587	2	12.5	2	100	0	50	0	0	48	52	1.00
939673--939738	25	2.6	25	88	11	100	59	4	4	31	1.38
949838--949868	15	2.1	15	100	0	62	25	41	0	32	1.56
952200--952238	15	2.3	18	83	16	57	28	2	0	69	1.02
959353--959555	101	2.0	100	85	3	273	30	17	16	34	1.93
959458--959601	59	2.4	61	80	8	177	31	20	15	32	1.93
963335--963382	12	3.7	12	77	20	51	47	0	10	41	1.37
963465--963504	11	3.7	11	86	3	55	47	5	5	42	1.47
963513--963790	82	3.3	83	85	6	348	37	5	3	52	1.43
963952--964000	20	2.5	20	82	0	62	14	36	22	26	1.92
965667--965720	24	2.2	24	83	0	63	24	33	33	9	1.87
966193--966284	30	3.1	30	82	6	89	26	6	6	60	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
967079--967213	40	3.4	38	73	12	96	30	28	20	21	1.98
967111--967214	37	2.7	38	76	5	93	31	26	19	22	1.97
967298--967365	6	11.5	6	78	9	50	26	25	0	48	1.51
967317--967365	18	2.7	18	87	6	73	22	28	0	48	1.50
967319--967361	12	3.5	13	87	9	56	23	30	0	46	1.52
984634--984670	3	13.0	3	83	11	51	32	2	0	64	1.07
987815--987861	25	2.0	24	83	8	60	57	2	6	34	1.36
990226--990278	27	2.0	27	96	0	97	28	11	15	45	1.80
991144--991175	15	2.1	15	94	0	55	18	6	9	65	1.42
991160--991211	26	2.0	26	85	7	70	26	15	11	46	1.80
992476--992507	15	2.1	15	94	0	55	21	6	6	65	1.38
995361--995419	30	2.0	30	83	12	77	49	0	5	45	1.24
1000472--1000513	6	7.0	6	100	0	84	0	0	50	50	1.00
1004410--1004459	24	2.1	23	82	10	57	36	6	0	58	1.23
1004463--1004512	15	3.1	17	75	13	52	52	0	0	48	1.00
1004511--1004587	16	5.2	16	65	23	51	49	0	1	49	1.09
1004429--1004587	58	2.7	57	84	10	178	46	1	0	51	1.13
1004506--1004587	32	2.9	26	69	19	74	48	0	1	50	1.08
1007922--1008229	59	5.2	59	88	3	444	34	3	29	33	1.74
1007917--1008229	117	2.7	117	90	2	484	33	3	30	32	1.74
1008270--1008641	162	2.3	161	88	0	530	40	14	19	25	1.89
1010340--1010400	11	5.5	11	78	7	52	50	1	1	45	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1010342--1010400	27	2.2	26	82	8	73	50	1	1	45	1.21
1010350--1010390	17	2.5	17	96	4	75	56	0	2	41	1.13
1010354--1010408	27	2.0	27	82	0	65	52	7	1	38	1.40
1010535--1010564	2	15.0	2	100	0	60	50	0	0	50	1.00
1013657--1013736	30	2.7	29	74	14	74	38	5	22	33	1.76
1013681--1013958	29	9.5	29	75	15	198	38	2	23	35	1.70
1013623--1013941	59	5.4	59	79	9	273	37	3	23	35	1.72
1013682--1013958	30	9.5	29	78	10	199	38	2	23	35	1.70
1013715--1013955	88	2.8	88	80	8	269	39	2	22	35	1.69
1015099--1015156	13	4.6	13	79	12	59	41	5	0	53	1.23
1015170--1015218	24	2.0	24	84	0	62	46	2	0	51	1.12
1015896--1015944	17	2.9	16	91	8	80	59	2	0	38	1.09
1016178--1016207	15	2.0	15	93	0	51	60	23	6	10	1.52
1024090--1024181	31	3.2	28	81	13	107	64	15	9	10	1.50
1024090--1024150	28	2.2	28	93	0	104	62	13	9	14	1.55
1028181--1028209	13	2.1	14	93	6	51	31	10	0	58	1.31
1035894--1035923	15	1.9	16	93	6	53	66	10	6	16	1.41
1039324--1039458	51	2.6	51	85	1	189	27	22	16	34	1.95
1041835--1041922	23	3.8	23	86	4	97	42	18	10	29	1.83
1048584--1048625	20	2.3	19	84	12	52	30	0	0	69	0.89
1051251--1051283	17	1.9	17	93	0	57	36	0	0	63	0.95
1052202--1052249	24	2.0	24	91	0	78	12	41	10	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1063292--1063354	31	2.0	31	96	0	117	38	11	15	34	1.83
1065990--1066029	19	2.2	18	90	4	62	57	0	0	42	0.98
1068847--1069085	52	4.6	52	93	0	388	26	15	23	35	1.94
1073297--1073330	16	2.2	16	89	5	52	26	8	14	50	1.72
1076346--1076387	22	2.0	21	85	4	57	23	28	19	28	1.98
1077858--1077901	13	3.5	13	84	6	56	75	4	20	0	0.98
1079018--1079114	29	3.3	30	83	9	121	41	21	1	36	1.60
1078992--1079114	30	4.1	30	79	12	128	39	21	3	35	1.69
1078942--1079128	30	6.3	29	74	6	108	34	21	5	37	1.77
1083232--1083265	15	2.3	15	100	0	68	88	0	11	0	0.52
1084466--1084787	112	2.9	111	83	5	397	28	20	12	38	1.89
1085215--1085441	97	2.3	97	80	8	253	37	15	26	19	1.92
1085214--1085970	98	7.7	98	82	3	713	34	15	28	21	1.94
1085215--1086003	196	4.0	196	82	4	819	34	15	27	21	1.94
1085362--1085970	49	12.4	49	74	5	446	33	14	28	22	1.94
1085362--1085970	98	6.2	98	84	1	718	33	14	28	22	1.94
1086873--1086925	17	2.9	19	72	11	56	20	39	18	20	1.92
1089029--1089140	24	4.9	23	78	12	115	68	21	4	5	1.27
1089039--1089140	12	8.8	12	74	8	86	68	21	4	4	1.28
1089029--1089129	44	2.2	45	82	5	123	68	21	4	4	1.28
1089045--1089140	32	2.9	32	78	6	84	67	22	5	4	1.28
1089039--1089244	68	2.9	69	80	9	179	66	20	6	6	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1089166--1089244	22	3.8	22	82	12	87	65	18	7	7	1.42
1089137--1089205	32	2.3	31	90	7	106	63	20	8	7	1.46
1089174--1089209	18	2.0	18	94	0	63	72	13	5	8	1.27
1090640--1090679	21	1.9	21	89	0	62	35	0	2	62	1.09
1098454--1098766	24	13.0	24	85	0	383	20	26	16	36	1.93
1116048--1116080	17	2.0	17	88	5	50	66	6	0	27	1.15
1117258--1117322	24	2.7	23	83	4	67	32	0	6	61	1.21
1117866--1117927	24	2.5	25	73	7	63	50	12	8	29	1.69
1118637--1118857	30	7.4	29	77	12	191	36	26	3	33	1.73
1130986--1131466	39	12.3	39	74	6	373	24	32	18	24	1.97
1130943--1131466	78	6.7	78	82	2	480	24	32	18	24	1.97
1131025--1131500	78	6.1	78	85	1	569	24	31	19	24	1.98
1132022--1132063	20	2.1	20	86	8	59	45	2	2	50	1.27
1133244--1133295	14	3.7	14	81	0	68	21	26	42	9	1.83
1133239--1133297	28	2.1	28	93	0	100	20	28	42	8	1.81
1133930--1134240	30	10.4	29	72	12	231	36	25	0	37	1.63
1133918--1134240	59	5.4	57	79	11	303	35	25	1	37	1.64
1134357--1134385	10	2.9	10	100	0	58	0	10	0	89	0.48
1136407--1136482	38	2.0	38	82	10	93	53	1	2	42	1.23
1136428--1136494	27	2.5	27	80	4	73	52	2	2	41	1.32
1136683--1136733	16	3.3	15	76	10	50	43	3	5	47	1.46
1139466--1139523	29	2.0	29	89	0	89	62	20	3	13	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1140107--1140148	12	3.5	12	86	0	57	9	16	42	30	1.80
1160653--1160699	24	2.0	24	82	0	58	38	4	2	55	1.31
1165045--1165104	30	2.0	30	100	0	120	26	13	16	43	1.85
1166774--1166829	21	2.6	21	86	13	87	46	17	14	21	1.84
1166879--1166944	23	2.9	23	86	4	80	33	24	31	10	1.89
1180015--1180122	54	2.0	54	100	0	216	38	22	11	27	1.88
1186466--1186550	38	2.2	37	83	8	100	22	31	18	27	1.97
1190644--1190683	3	13.3	3	100	0	80	0	32	0	67	0.91
1192977--1193310	128	2.6	130	78	6	329	35	17	18	29	1.94
1196106--1196139	17	1.9	17	94	5	59	23	5	2	67	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144