genome.fa.s7.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  6  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1544321--1544406	26	3.2	26	73	9	91	38	16	8	37	1.78
1544321--1544426	29	3.9	28	73	10	94	39	14	9	36	1.78
1544310--1544449	55	2.6	55	91	1	228	45	14	7	33	1.72
1544347--1544436	29	3.2	28	69	10	85	42	13	8	35	1.75
1544573--1544709	20	6.9	20	68	27	80	47	0	0	51	1.05
1544581--1544700	30	3.7	29	79	21	132	48	0	0	51	1.00
1544573--1544678	40	2.7	39	91	7	171	46	0	0	53	1.00
1544625--1544700	30	2.6	29	97	2	143	46	0	0	53	1.00
1544661--1544703	22	2.0	22	90	4	70	51	0	0	48	1.00
1545578--1545635	25	2.4	23	91	5	89	12	12	13	62	1.56
1547165--1547226	30	2.1	30	87	6	90	40	17	11	30	1.85
1548840--1548890	15	3.5	15	81	2	59	49	1	0	49	1.12
1550460--1550587	63	2.0	64	83	1	159	42	10	11	35	1.75
1554902--1555057	60	2.6	60	80	8	165	42	17	16	23	1.89
1558015--1558050	3	11.7	3	94	5	63	66	0	0	33	0.92
1559077--1559128	20	2.6	20	87	0	68	40	23	15	21	1.91
1573774--1573807	15	2.3	15	100	0	68	26	29	0	44	1.55
1580049--1580088	18	2.2	19	90	4	64	22	17	22	37	1.94
1590997--1591039	3	14.3	3	100	0	86	32	0	0	67	0.91
1592757--1593017	131	2.0	131	95	0	468	26	26	13	32	1.94
1596826--1596864	18	2.2	18	85	0	51	30	5	12	51	1.62
1598270--1598302	11	2.8	12	86	9	50	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1605127--1605371	122	2.0	122	97	0	463	26	22	21	29	1.99
1608232--1608322	34	2.6	35	82	5	96	29	29	18	21	1.97
1608299--1608505	80	2.6	80	82	3	272	33	27	17	20	1.96
1612335--1612405	36	2.0	36	97	0	133	33	21	12	32	1.91
1612371--1612473	51	2.0	51	96	0	188	28	22	16	33	1.95
1614668--1614703	18	1.9	18	94	5	63	11	11	0	77	0.99
1619841--1619883	12	3.7	12	75	6	52	41	16	13	27	1.86
1619797--1619899	23	4.4	23	91	3	129	39	14	11	33	1.82
1621724--1621762	19	2.1	19	100	0	78	41	5	10	43	1.61
1626754--1626833	32	2.5	33	82	10	103	18	20	20	41	1.91
1633711--1633938	118	2.0	112	90	7	361	35	18	4	41	1.72
1658341--1658389	24	2.0	24	84	8	62	57	4	4	34	1.37
1658974--1659144	80	2.1	80	98	0	333	28	23	10	37	1.88
1660964--1660993	15	2.0	15	93	0	51	33	6	30	30	1.83
1661013--1661144	39	3.2	39	66	15	113	42	3	36	18	1.66
1660979--1661158	84	2.1	84	96	0	333	43	3	34	18	1.68
1668062--1668128	17	3.9	17	76	3	62	34	1	1	62	1.13
1668059--1668139	35	2.4	35	77	6	87	35	2	1	60	1.18
1669579--1669603	3	8.3	3	100	0	50	68	32	0	0	0.90
1675355--1675411	24	2.4	24	75	18	57	75	1	12	10	1.12
1677730--1677754	11	2.3	11	100	0	50	20	0	0	80	0.72
1681061--1681086	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1684948--1684987	17	2.4	17	83	8	55	65	0	5	30	1.14
1688826--1688941	44	2.7	43	80	11	139	32	9	6	50	1.61
1688980--1689021	22	1.9	22	85	9	59	52	0	0	47	1.00
1690743--1690794	13	4.2	13	78	7	54	25	0	0	75	0.81
1690737--1690796	25	2.6	22	80	12	75	25	0	0	75	0.81
1690737--1690794	27	2.2	26	87	9	82	24	0	0	75	0.80
1692067--1692264	90	2.2	89	81	2	236	31	16	22	29	1.96
1692460--1692637	86	2.1	86	94	0	311	41	15	14	28	1.86
1696181--1696264	31	2.7	31	88	3	125	41	22	10	25	1.86
1698996--1699162	43	3.9	42	80	3	172	43	22	15	19	1.88
1701053--1701091	21	1.9	20	85	15	53	30	17	2	48	1.61
1701692--1701738	5	9.0	5	81	9	58	38	17	21	23	1.93
1702763--1702801	18	2.1	19	85	4	53	56	0	2	41	1.13
1704532--1704581	23	2.3	22	80	12	59	68	2	2	28	1.12
1705677--1705763	24	3.6	24	87	0	120	26	10	10	52	1.67
1707683--1707745	24	2.6	24	89	0	99	25	12	11	50	1.73
1708208--1708248	19	2.2	19	91	4	66	39	4	7	48	1.52
1709978--1710031	20	2.7	20	79	0	63	33	11	25	29	1.91
1710357--1710417	21	2.9	20	76	14	52	50	3	1	44	1.28
1711546--1711589	14	2.8	16	80	16	56	47	0	0	52	1.00
1715002--1715129	60	2.1	62	88	2	188	21	19	11	46	1.81
1715276--1715468	31	6.4	30	68	16	107	46	11	16	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1715280--1715409	31	4.3	31	74	11	110	46	12	15	26	1.81
1715284--1715456	89	1.9	91	82	6	203	47	10	16	25	1.78
1717086--1717184	39	2.5	40	91	3	164	29	20	19	31	1.97
1722361--1722450	40	2.3	40	92	1	155	26	21	16	35	1.94
1724265--1724330	32	2.0	33	85	8	91	36	19	7	36	1.81
1725562--1725621	30	2.0	30	86	0	84	26	25	11	36	1.90
1737650--1737692	20	2.2	20	82	0	50	76	4	0	18	0.95
1737770--1737966	9	21.3	9	65	19	68	59	5	3	31	1.35
1737772--1737843	19	3.8	19	77	18	64	63	5	2	27	1.30
1737770--1737826	29	2.0	29	86	6	80	61	5	1	31	1.28
1737793--1737997	100	2.0	100	83	5	254	60	5	3	30	1.37
1738014--1738109	31	3.3	29	75	14	76	56	5	0	38	1.22
1738213--1738276	27	2.4	27	77	15	69	62	1	3	32	1.20
1738236--1738270	16	2.1	18	89	10	56	65	0	0	34	0.93
1738244--1738285	21	2.0	21	86	9	59	61	0	0	38	0.96
1741861--1741996	68	2.0	69	86	1	193	51	3	3	41	1.37
1744012--1744076	17	3.9	17	81	4	78	38	0	6	55	1.25
1744013--1744085	33	2.2	33	82	0	83	41	1	4	53	1.28
1744019--1744092	27	2.7	27	78	0	76	41	1	4	52	1.28
1744032--1744085	16	3.3	16	79	5	54	42	1	1	53	1.22
1744778--1744851	20	3.5	20	73	8	58	52	8	5	33	1.54
1744837--1744874	13	2.8	13	92	4	58	55	2	0	42	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1748750--1748845	39	2.4	39	89	3	156	33	18	19	28	1.96
1759308--1759336	9	3.3	9	95	4	51	24	0	0	75	0.80
1759957--1759990	17	2.0	17	94	0	59	29	32	0	38	1.58
1761239--1761272	12	2.8	12	90	0	50	8	29	41	20	1.82
1764091--1764134	18	2.4	18	84	3	61	47	13	15	22	1.81
1765540--1765573	17	2.0	17	94	0	59	32	32	0	35	1.58
1766474--1766598	19	6.5	19	67	16	53	60	4	4	31	1.33
1766504--1766565	31	2.0	32	84	6	83	61	6	1	30	1.31
1766406--1766575	39	4.4	39	71	10	118	58	5	1	34	1.31
1767142--1767176	18	1.9	18	88	0	52	74	0	2	22	0.95
1767412--1767471	22	2.7	23	78	2	68	50	0	3	46	1.18
1767445--1767502	30	1.9	30	85	0	80	39	1	8	50	1.43
1769650--1769696	24	1.9	24	83	12	60	46	0	0	53	1.00
1769728--1769806	36	2.2	36	100	0	158	50	2	10	36	1.50
1776091--1776145	16	3.2	16	79	7	56	67	3	1	27	1.17
1777135--1777176	20	2.0	21	86	13	61	33	4	4	57	1.41
1777134--1777177	19	2.2	20	80	11	56	36	4	4	54	1.41
1785306--1785370	26	2.4	27	78	14	64	49	0	4	46	1.22
1789354--1789402	22	2.2	22	100	0	98	20	4	24	51	1.65
1791293--1791335	18	2.5	17	76	3	50	34	0	2	62	1.08
1800078--1800175	22	4.8	20	75	17	94	4	8	20	67	1.34
1800133--1800165	17	1.9	17	100	0	66	6	6	15	72	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1800208--1800264	15	3.7	15	81	9	60	12	7	15	64	1.47
1800211--1800287	32	2.4	32	84	4	93	10	5	20	63	1.45
1800431--1800474	21	2.1	21	83	8	54	25	0	6	68	1.14
1801204--1801249	19	2.3	19	85	7	56	52	13	0	34	1.40
1802500--1802559	27	2.2	28	81	3	68	31	0	3	65	1.09
1806454--1806495	21	2.0	21	86	9	59	33	11	21	33	1.90
1816385--1816438	24	2.2	24	100	0	108	12	14	31	40	1.84
1817441--1817498	23	2.5	23	88	0	89	22	46	18	12	1.82
1817513--1817537	13	1.9	13	100	0	50	24	24	16	36	1.94
1824844--1825080	124	1.9	126	84	4	318	40	23	10	24	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144