genome.fa.s7.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  39  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9988378--9988428	20	2.5	21	87	12	79	56	13	1	27	1.48
9989615--9989705	32	3.1	29	73	20	80	63	1	0	35	1.02
9990674--9990711	3	12.7	3	94	0	67	0	28	0	71	0.87
9992689--9992787	40	2.5	41	88	6	150	29	21	20	29	1.98
10001007--10001282	26	10.6	26	85	4	258	33	18	21	26	1.96
10000980--10001102	52	2.4	52	83	0	147	33	17	18	30	1.95
10003160--10003328	41	4.1	41	75	13	159	31	28	18	21	1.97
10008588--10008676	18	4.9	18	72	4	63	28	21	19	31	1.97
10009671--10009699	3	9.7	3	100	0	58	34	34	0	31	1.58
10011301--10011329	14	2.1	14	100	0	58	48	17	0	34	1.47
10011275--10011355	40	2.0	40	100	0	162	51	20	2	24	1.59
10011315--10011372	26	2.2	26	100	0	116	55	22	3	18	1.58
10011070--10011462	138	2.8	142	85	6	541	55	16	4	23	1.60
10011070--10011462	72	5.6	72	84	7	527	55	16	4	23	1.60
10017389--10017622	61	3.9	61	89	4	350	26	20	14	38	1.91
10017776--10017938	60	2.7	60	85	5	206	26	15	17	40	1.89
10018101--10018288	62	3.0	61	80	6	209	26	16	14	42	1.87
10017440--10018496	332	3.2	333	85	6	1355	27	17	13	41	1.87
10018225--10018713	214	2.3	210	81	8	573	30	17	12	39	1.87
10018652--10018899	62	4.0	62	93	0	406	27	19	15	37	1.92
10019055--10019199	63	2.3	62	86	1	200	27	15	17	39	1.90
10019388--10019575	62	3.0	62	83	5	238	26	16	16	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10018711--10019781	336	3.2	337	86	4	1473	27	17	14	40	1.88
10019511--10020001	212	2.3	214	81	7	579	30	17	12	39	1.87
10019940--10020186	62	4.0	62	93	0	397	27	19	15	37	1.92
10020341--10020525	61	3.0	61	85	1	244	26	16	17	38	1.91
10020561--10020709	80	1.9	80	84	8	205	32	22	10	34	1.87
10020760--10021007	62	4.0	62	91	1	390	26	18	15	38	1.91
10021209--10021429	61	3.9	52	77	10	133	25	17	16	41	1.89
10021284--10021521	62	3.9	62	86	4	320	27	17	15	39	1.90
10021284--10021521	123	1.9	124	86	2	336	27	17	15	39	1.90
10021674--10021861	62	3.0	61	89	5	272	27	18	16	38	1.92
10020769--10021782	514	2.0	514	92	2	1700	27	17	15	39	1.90
10021735--10022682	278	3.4	276	87	2	1324	28	17	13	40	1.88
10022286--10022412	62	2.0	62	90	0	200	30	18	14	36	1.91
10022564--10022810	61	4.0	61	84	5	311	28	17	14	39	1.89
10022286--10024698	398	6.0	401	72	12	1902	27	17	14	39	1.90
10022962--10023150	62	3.0	62	87	0	279	26	16	17	38	1.92
10023184--10023333	78	1.9	78	85	9	207	34	22	10	32	1.88
10023384--10023632	62	4.0	62	88	0	354	27	18	15	38	1.91
10023790--10024084	62	4.9	62	79	9	351	25	17	17	38	1.92
10023792--10024008	113	1.9	113	93	0	371	23	17	18	40	1.91
10023452--10024345	452	2.0	452	89	2	1395	27	17	15	39	1.90
10024236--10024423	62	3.0	60	88	3	259	28	18	15	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10024573--10024698	61	2.0	62	83	1	155	28	19	15	36	1.92
10023905--10024698	337	2.3	338	86	2	1119	27	17	15	39	1.90
10024850--10024976	62	2.0	62	95	0	227	29	18	14	36	1.92
10024297--10025253	277	3.5	277	86	1	1346	28	18	13	39	1.89
10025127--10025376	62	4.0	62	85	1	313	27	18	14	40	1.89
10024850--10025715	400	2.2	401	88	2	1330	27	18	14	39	1.89
10025527--10025715	62	3.0	62	88	0	288	26	19	16	37	1.92
10025855--10025981	62	2.0	62	92	0	209	29	17	15	37	1.91
10025589--10026259	278	2.5	266	84	4	860	27	17	15	39	1.90
10026133--10026383	62	4.0	62	89	0	349	29	17	15	37	1.91
10025855--10027544	402	4.2	403	82	5	2137	28	17	14	39	1.89
10026535--10026723	62	3.0	62	87	3	265	26	16	16	39	1.90
10024573--10026830	340	6.7	340	71	13	1685	27	17	14	40	1.89
10026757--10026906	79	1.9	79	86	8	216	35	22	10	32	1.87
10026957--10027204	62	4.0	62	94	1	417	26	18	15	39	1.91
10027356--10027544	62	3.0	62	88	0	288	28	18	16	36	1.93
10026008--10027632	821	2.0	821	91	1	2630	28	17	14	39	1.89
10027016--10028159	340	3.4	339	90	1	1740	27	17	15	39	1.90
10027695--10027882	62	3.0	61	90	3	272	27	18	17	37	1.93
10028034--10028159	62	2.0	62	84	1	164	26	20	18	34	1.96
10027756--10028696	277	3.4	278	87	1	1350	27	17	14	40	1.89
10028310--10028436	62	2.0	62	92	0	209	29	17	15	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10026840--10028436	678	2.3	677	73	11	1637	27	17	14	39	1.89
10028588--10028839	62	4.0	62	83	4	292	28	17	14	39	1.89
10028588--10028819	123	1.9	126	87	4	346	28	17	14	40	1.88
10028774--10029256	215	2.2	217	82	3	580	28	18	15	38	1.90
10029211--10029457	62	4.0	61	89	1	350	26	19	16	37	1.93
10029220--10029457	123	1.9	124	89	2	372	26	20	16	36	1.93
10029394--10029890	215	2.3	216	82	6	578	29	18	14	37	1.90
10029855--10030014	62	2.6	62	89	0	230	26	19	16	38	1.92
10028372--10030014	618	2.7	618	87	2	2338	28	18	14	38	1.90
10029268--10030509	557	2.2	555	89	3	1976	28	18	14	38	1.90
10030688--10030847	62	2.6	62	88	0	230	25	20	17	36	1.94
10030783--10031280	215	2.3	217	82	4	603	30	18	14	37	1.90
10031219--10031466	62	4.0	61	88	4	336	25	20	16	37	1.93
10030659--10032642	619	3.2	619	93	0	3251	28	18	14	37	1.91
10031402--10031892	215	2.3	217	83	4	607	29	19	14	36	1.91
10031838--10032085	62	4.0	62	92	0	388	26	19	16	37	1.93
10032021--10032518	215	2.3	216	82	6	589	29	18	14	37	1.90
10032483--10032642	62	2.6	62	89	0	230	26	19	16	38	1.92
10032578--10033057	216	2.2	217	82	5	569	28	17	15	38	1.90
10031895--10033126	557	2.2	557	91	2	2035	28	18	14	38	1.90
10032795--10033415	276	2.2	280	81	5	697	27	18	16	37	1.92
10033318--10033477	62	2.6	62	87	0	221	25	21	16	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10033413--10033910	215	2.3	217	82	4	612	30	18	14	37	1.90
10033849--10034096	62	4.0	61	88	3	343	25	20	16	37	1.93
10032559--10036533	838	4.7	823	72	15	2820	28	18	14	37	1.91
10034381--10034581	62	3.2	62	87	2	305	27	20	14	36	1.92
10033892--10034872	485	2.0	485	94	0	1730	29	20	13	37	1.91
10034517--10035014	215	2.3	217	82	4	612	30	18	14	36	1.90
10034953--10035200	62	4.0	61	88	4	336	25	20	15	37	1.92
10035136--10035614	215	2.2	217	82	5	576	29	18	14	37	1.91
10034375--10035696	619	2.1	620	94	0	2328	28	19	14	37	1.91
10035352--10035976	279	2.2	279	79	6	640	27	18	16	37	1.92
10035875--10036038	66	2.6	62	86	3	211	25	20	17	37	1.93
10035846--10036038	62	3.0	62	79	7	235	25	19	17	37	1.93
10035974--10036471	215	2.3	217	82	4	614	29	18	14	37	1.91
10036410--10036657	62	4.0	61	88	3	343	25	20	16	37	1.93
10035846--10037153	619	2.1	622	92	1	2169	28	18	14	37	1.91
10036593--10037071	215	2.2	217	82	5	567	29	18	14	37	1.91
10036809--10037433	279	2.2	279	80	6	649	27	18	16	37	1.92
10037332--10037495	66	2.6	62	86	3	211	25	20	17	37	1.93
10037303--10037495	62	3.0	62	79	7	235	25	19	17	37	1.93
10036469--10040551	838	4.8	835	72	15	3616	28	18	14	37	1.91
10037431--10037928	215	2.3	217	82	4	605	29	18	14	37	1.90
10037867--10038114	62	4.0	61	88	3	343	25	20	16	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10038399--10038599	62	3.2	62	87	2	305	27	20	14	36	1.92
10037910--10038890	485	2.0	485	94	0	1739	29	19	13	37	1.91
10038535--10039032	215	2.3	217	83	4	621	30	18	14	37	1.90
10038971--10039218	62	4.0	61	88	4	336	25	20	15	37	1.92
10039154--10039632	215	2.2	217	82	5	576	29	18	14	37	1.91
10038393--10039714	619	2.1	620	94	0	2337	28	19	14	37	1.91
10039893--10040056	66	2.6	62	86	3	211	25	20	17	37	1.93
10039864--10040056	62	3.0	62	79	7	235	25	19	17	37	1.93
10039992--10040489	215	2.3	217	82	4	596	29	18	14	37	1.90
10040428--10040675	62	4.0	62	89	3	338	25	19	16	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144