genome.fa.s7.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  138  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35853257--35853290	17	2.0	17	100	0	68	41	5	0	52	1.25
35854181--35854223	18	2.3	18	88	4	59	30	4	2	62	1.28
35861461--35861564	11	9.5	11	71	8	59	25	5	2	66	1.28
35861499--35861548	22	2.3	22	92	0	82	32	6	0	62	1.20
35863439--35863464	2	13.0	2	100	0	52	50	0	0	50	1.00
35871778--35871850	29	2.6	28	79	10	71	54	0	2	42	1.14
35872174--35872212	19	2.1	19	85	9	53	71	2	0	25	0.98
35878965--35879034	33	2.1	33	100	0	140	34	17	20	28	1.95
35880698--35880764	33	2.0	33	100	0	134	38	14	14	31	1.87
35893045--35893103	29	2.0	29	90	6	91	59	11	0	28	1.33
35893428--35893466	2	19.5	2	83	0	51	58	0	0	41	0.98
35893428--35893466	12	3.2	12	92	0	60	58	0	0	41	0.98
35893425--35893462	6	6.3	6	96	0	58	60	0	0	39	0.97
35893612--35893668	29	1.9	30	85	3	80	57	12	1	28	1.44
35897263--35897382	60	2.0	60	98	0	231	26	15	7	50	1.71
35898553--35898579	6	4.5	6	100	0	54	85	0	0	14	0.61
35908417--35908551	49	2.7	49	83	3	164	31	14	8	45	1.75
35913691--35913737	24	2.0	25	84	16	64	44	2	10	42	1.51
35925013--35925908	48	18.7	48	84	3	937	20	3	50	26	1.63
35925465--35925596	21	5.7	21	67	25	79	16	3	53	25	1.59
35925904--35926023	36	3.5	35	70	17	117	21	7	41	29	1.80
35925886--35926028	66	2.2	66	89	2	216	23	6	39	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35927152--35927597	48	9.3	48	79	4	461	21	3	49	26	1.65
35927149--35927597	96	4.7	95	81	3	517	21	3	49	26	1.65
35927270--35927354	21	3.8	21	75	17	89	18	0	52	28	1.45
35927152--35927597	192	2.3	192	96	0	804	21	3	49	26	1.65
35927462--35927546	21	3.8	21	75	17	89	18	0	52	28	1.45
35927416--35927714	165	1.8	165	85	1	429	20	3	50	25	1.64
35927602--35927885	96	3.0	96	88	1	417	22	3	51	22	1.62
35927416--35927758	165	2.1	166	83	2	420	20	3	51	23	1.63
35927601--35927864	144	1.8	144	84	3	361	23	3	50	22	1.63
35927601--35927885	48	5.9	48	79	0	302	22	3	51	22	1.62
35939926--35939970	14	3.3	13	82	11	54	8	15	0	75	1.03
35948353--35948414	23	2.7	23	85	2	81	14	27	19	38	1.90
35948395--35948451	23	2.5	23	94	2	98	12	21	29	36	1.90
35949272--35949352	41	2.0	41	85	4	110	33	0	20	45	1.52
35949341--35949434	28	3.4	28	74	12	86	41	0	12	45	1.42
35950097--35950146	24	2.1	24	81	7	57	52	6	0	42	1.26
35951908--35951948	18	2.3	19	79	12	50	39	2	0	58	1.11
35956772--35957213	218	2.0	218	94	0	767	27	18	14	39	1.89
35978310--35978334	9	2.8	9	100	0	50	24	0	8	68	1.16
35979410--35979460	19	2.6	19	81	12	59	70	3	1	23	1.14
35980610--35980640	3	10.3	3	100	0	62	0	0	67	32	0.91
35985002--35985073	30	2.4	30	78	19	78	45	0	2	51	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35985097--35985139	14	3.1	14	78	15	54	51	2	0	46	1.13
35987245--35987303	28	2.2	27	80	14	70	40	0	1	57	1.09
35989232--35989302	30	2.5	28	82	8	74	46	2	0	50	1.16
35989788--35989832	22	2.0	22	82	0	54	71	6	0	22	1.09
35992117--35992156	19	2.1	19	85	0	53	25	0	2	72	0.97
35994576--35994625	19	2.5	19	87	6	73	48	4	2	46	1.32
35997085--35997126	22	2.0	21	85	4	57	59	0	14	26	1.35
35997224--35997267	15	2.9	15	93	0	70	34	15	0	50	1.45
35997408--35997441	18	1.9	18	88	5	52	35	2	5	55	1.39
35997670--35997733	31	2.1	31	91	2	103	54	0	3	42	1.16
35998219--35998270	16	3.4	16	78	5	54	28	0	1	69	0.99
36002039--36002077	3	13.0	3	94	0	69	0	30	0	69	0.89
36002493--36002548	29	1.9	29	88	0	85	51	12	12	23	1.73
36002501--36002564	29	2.2	29	83	5	76	53	10	12	23	1.70
36008990--36009024	3	11.3	3	87	6	52	31	0	0	68	0.90
36017499--36017543	15	3.1	15	79	17	51	22	0	2	75	0.91
36018293--36018344	11	4.6	11	80	4	59	69	11	1	17	1.27
36023717--36023848	58	2.3	58	89	0	201	34	22	12	29	1.92
36023818--36024007	32	6.0	32	92	1	301	38	18	10	32	1.84
36023818--36024007	96	2.0	95	94	1	335	38	18	10	32	1.84
36023974--36024285	58	5.4	58	93	3	538	32	23	11	33	1.90
36037828--36038046	91	2.4	91	96	0	393	40	25	9	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36039569--36039612	21	2.0	23	86	8	65	38	2	0	59	1.10
36051328--36051422	46	2.1	46	97	0	181	43	2	8	46	1.46
36056645--36056675	12	2.6	12	100	0	62	25	6	51	16	1.68
36060891--36060930	21	1.9	21	100	0	80	25	10	27	37	1.88
36064985--36065026	19	2.1	21	83	16	54	35	9	7	47	1.64
36077743--36077784	18	2.3	18	84	8	50	59	7	2	30	1.37
36082688--36082784	41	2.3	41	98	1	185	47	24	16	11	1.79
36097038--36097085	21	2.3	20	79	10	51	43	0	0	56	0.99
36105585--36105687	51	2.0	51	88	5	152	26	17	28	28	1.98
36107408--36107464	9	6.4	9	75	16	57	22	1	0	75	0.90
36107401--36107467	16	3.8	17	76	11	73	25	1	1	71	1.03
36111056--36111113	30	2.0	29	86	6	82	41	1	5	51	1.34
36119656--36119704	2	25.5	2	84	15	68	48	2	0	48	1.12
36122187--36122233	15	3.1	15	87	0	58	8	31	27	31	1.87
36122300--36122340	15	2.7	15	96	0	73	19	29	19	31	1.96
36125862--36125924	30	2.1	31	87	3	92	42	1	4	50	1.32
36126121--36126154	13	2.7	13	90	4	52	32	0	0	67	0.91
36126590--36126638	26	1.9	25	84	12	64	18	20	12	48	1.79
36160231--36160275	23	2.0	23	82	8	56	28	8	2	60	1.39
36184236--36184292	27	2.1	27	83	9	71	38	17	24	19	1.93
36184454--36184506	23	2.3	23	81	9	63	62	1	33	1	1.17
36184701--36184765	30	2.1	32	83	13	82	21	0	10	67	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36184841--36184880	21	1.9	21	89	0	62	32	0	12	55	1.38
36187654--36187711	27	2.1	28	90	3	91	13	29	24	32	1.94
36188256--36188328	29	2.4	29	82	13	78	36	5	6	50	1.52
36188505--36188568	31	2.1	31	81	0	74	50	6	4	39	1.49
36208433--36208477	3	15.3	3	95	4	83	31	0	0	68	0.89
36227646--36227682	17	2.2	17	90	0	56	70	13	0	16	1.17
36227798--36227842	20	2.2	20	84	8	54	60	4	6	28	1.42
36230583--36230645	29	2.2	29	100	0	126	26	11	9	52	1.67
36232667--36232704	18	2.2	18	85	4	51	39	2	5	52	1.38
36236343--36236387	23	2.0	23	82	8	56	15	22	31	31	1.95
36237172--36237230	29	2.0	29	100	0	118	16	49	3	30	1.63
36247305--36247330	3	8.7	3	100	0	52	30	69	0	0	0.89
36262494--36262534	20	2.0	20	85	4	55	12	12	7	68	1.39
36266889--36266913	10	2.5	10	100	0	50	40	0	0	60	0.97
36266942--36266989	23	2.1	23	88	7	71	60	4	4	31	1.35
36274729--36274791	29	2.2	29	83	11	76	30	11	1	57	1.43
36279008--36279036	10	2.7	11	89	10	51	65	0	0	34	0.93
36279761--36279787	2	13.5	2	100	0	54	0	48	0	51	1.00
36279787--36279817	2	15.5	2	100	0	62	48	0	0	51	1.00
36287255--36287296	14	2.8	15	83	16	52	38	2	0	59	1.10
36301886--36301941	19	2.8	21	82	15	73	51	1	3	42	1.29
36302211--36302262	21	2.5	20	76	17	52	51	1	1	44	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36312632--36312657	12	2.2	12	100	0	52	23	7	23	46	1.78
36322768--36322824	19	2.8	19	76	19	53	70	3	1	24	1.13
36323568--36323603	6	6.2	6	90	6	56	27	0	72	0	0.85
36323544--36323603	23	2.6	22	75	10	57	26	5	66	1	1.21
36324319--36324351	15	2.2	15	94	0	57	69	6	24	0	1.10
36329837--36329910	28	2.6	28	74	6	69	24	6	6	62	1.45
36343701--36343763	31	2.1	29	88	5	90	33	6	6	53	1.51
36343862--36343943	31	2.7	30	77	17	89	31	10	15	41	1.82
36344086--36344144	29	2.0	30	86	3	84	49	13	6	30	1.68
36344363--36344412	15	3.4	15	68	15	50	32	4	8	56	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144