genome.fa.s7.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  97  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22757812--22758004	58	3.4	57	82	4	230	40	13	18	27	1.88
22758680--22758744	30	2.1	31	83	13	82	38	6	0	55	1.25
22767787--22767958	29	5.9	29	68	11	100	60	5	1	33	1.26
22777794--22777835	17	2.7	15	82	17	50	45	14	0	40	1.45
22782474--22782537	12	5.2	12	75	9	58	42	14	14	29	1.84
22782542--22782567	4	6.5	4	100	0	52	76	23	0	0	0.78
22790472--22790507	16	2.1	16	90	10	54	55	0	0	44	0.99
22792114--22792466	174	2.0	175	95	0	636	43	11	3	41	1.58
22798731--22798772	19	2.2	20	91	4	68	40	2	4	52	1.35
22799360--22799411	14	3.6	14	70	14	52	55	11	3	28	1.53
22799355--22799413	29	2.0	30	96	3	111	55	13	3	27	1.54
22799444--22799502	23	2.5	24	75	5	57	50	6	3	38	1.45
22803153--22803208	25	2.3	24	78	6	58	37	0	0	62	0.95
22804804--22804906	16	5.8	16	70	24	73	10	21	30	37	1.87
22804801--22804964	37	4.5	37	89	0	240	11	20	28	39	1.87
22804821--22804895	21	3.8	21	74	18	70	12	20	29	38	1.88
22814768--22815114	42	8.5	40	72	9	168	41	17	22	18	1.90
22814768--22814851	39	2.1	39	82	2	105	42	23	16	16	1.88
22814877--22815076	42	4.8	42	77	8	169	42	14	25	18	1.88
22814889--22815114	122	1.8	123	81	5	278	41	16	23	18	1.90
22823426--22823458	15	2.2	15	94	0	57	24	0	27	48	1.51
22823550--22823791	42	5.8	40	81	8	261	28	19	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22823543--22823786	126	1.9	126	85	5	332	30	19	24	25	1.98
22823554--22823791	84	2.8	83	85	1	305	29	18	25	27	1.98
22828403--22828521	40	3.0	40	79	0	139	31	21	26	21	1.98
22828469--22828597	65	2.0	65	82	8	156	29	19	24	26	1.98
22831643--22831681	19	2.1	19	85	9	53	71	7	0	20	1.10
22833996--22834026	3	10.3	3	100	0	62	64	0	0	35	0.94
22835714--22835752	15	2.6	16	88	8	55	0	33	0	66	0.92
22844220--22844259	20	2.1	19	85	4	53	70	2	12	15	1.28
22849154--22849789	233	2.7	235	75	10	612	42	20	12	24	1.86
22851987--22852023	13	2.5	15	87	12	51	45	0	2	51	1.15
22852646--22852683	15	2.5	15	84	12	51	31	10	0	57	1.32
22854892--22854948	30	1.9	30	89	7	89	56	8	22	12	1.63
22872886--22872952	30	2.3	31	82	12	79	32	5	4	56	1.43
22873103--22873163	30	2.0	30	84	9	79	52	11	11	24	1.70
22873143--22873200	31	1.9	31	85	3	82	39	12	13	34	1.82
22873449--22873490	16	2.5	17	88	3	59	73	0	0	26	0.83
22879686--22879719	17	2.0	17	100	0	68	58	0	0	41	0.98
22882854--22882910	28	2.2	24	82	17	62	49	8	1	40	1.44
22884195--22884294	28	3.5	28	73	11	85	35	0	35	30	1.58
22884167--22884303	58	2.3	58	88	1	202	34	0	32	32	1.64
22884211--22884301	30	3.1	30	72	12	89	32	0	31	35	1.58
22884165--22884300	29	4.7	28	71	13	96	33	0	33	31	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22884338--22884600	30	8.8	30	85	6	291	37	2	21	38	1.68
22884329--22884610	90	3.1	89	84	5	372	37	2	21	38	1.68
22884338--22884600	60	4.4	60	85	4	325	37	2	21	38	1.68
22885683--22885733	22	2.3	22	86	0	66	15	27	43	13	1.85
22886551--22886599	6	7.5	6	84	15	62	28	0	4	67	1.09
22886572--22886654	6	14.2	6	77	18	59	49	0	2	48	1.14
22886604--22886654	16	3.2	16	89	10	79	56	0	1	41	1.10
22886595--22886672	27	3.0	27	81	3	79	53	5	2	38	1.37
22886951--22887740	76	10.8	76	84	10	977	32	18	15	32	1.93
22886957--22887651	141	4.8	145	84	8	804	33	18	15	32	1.92
22887098--22887704	145	4.2	144	81	9	657	32	18	15	32	1.93
22886951--22887740	362	2.2	362	96	1	1447	32	18	15	32	1.93
22887518--22887704	38	5.1	35	67	22	118	31	20	14	33	1.92
22899451--22899578	58	2.2	59	88	1	186	32	2	34	30	1.71
22899560--22899853	30	9.9	30	83	5	332	36	3	22	37	1.71
22899568--22899857	60	4.9	60	85	4	367	37	3	21	37	1.71
22900692--22900733	16	2.9	15	79	13	52	2	11	2	83	0.84
22900691--22900733	12	3.3	13	77	9	52	2	13	2	81	0.89
22900928--22900978	22	2.3	22	86	0	66	15	27	43	13	1.85
22901813--22901901	6	15.2	6	79	17	89	51	0	2	46	1.13
22901815--22901911	11	8.5	11	75	13	70	51	1	2	45	1.19
22901815--22901901	17	5.4	16	82	12	97	51	0	2	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22901824--22901894	37	1.9	37	86	11	101	54	0	2	42	1.14
22901828--22901901	17	4.6	16	85	11	107	55	0	2	41	1.14
22901865--22901919	27	2.0	27	82	0	65	52	7	1	38	1.40
22909780--22909929	22	6.2	25	84	9	156	36	24	28	12	1.91
22909845--22909908	26	2.5	25	97	0	101	34	25	31	9	1.87
22909780--22909929	48	3.1	47	78	14	171	36	24	28	12	1.91
22920245--22920298	18	3.0	18	78	10	65	53	5	33	7	1.52
22920403--22920507	28	3.8	28	84	0	129	29	13	19	38	1.89
22920383--22920506	14	8.9	14	69	3	70	30	14	20	34	1.92
22920402--22920508	56	1.9	56	88	0	160	28	13	18	39	1.88
22924221--22924351	26	5.0	26	87	0	190	36	16	22	24	1.94
22924224--22924374	52	2.9	52	87	2	205	35	17	23	23	1.95
22924233--22924374	26	5.5	26	77	9	139	34	17	23	23	1.96
22929672--22929960	52	5.6	52	87	3	406	24	14	24	35	1.94
22929672--22929960	102	2.8	102	86	5	386	24	14	24	35	1.94
22931969--22932026	18	3.2	18	76	11	64	56	3	31	8	1.46
22938190--22938440	131	1.9	129	88	1	376	23	13	10	52	1.70
22938533--22938562	16	1.9	15	93	6	51	13	0	13	73	1.10
22941900--22941924	12	2.1	12	100	0	50	32	8	24	36	1.84
22944749--22944884	23	6.0	22	81	7	130	11	21	25	41	1.87
22950491--22950532	16	2.6	16	82	14	50	50	2	9	38	1.48
22950789--22950823	16	2.2	16	90	5	54	57	5	5	31	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22950840--22950882	16	2.8	15	80	13	52	60	18	4	16	1.52
22955998--22956112	9	11.8	9	67	14	59	34	2	0	61	1.16
22955997--22956110	10	11.5	10	66	15	58	34	2	0	62	1.15
22955997--22956083	39	2.2	39	82	12	106	32	3	1	63	1.19
22956032--22956110	32	2.6	30	79	16	99	36	2	0	60	1.10
22983477--22983513	12	3.1	12	92	0	56	51	0	27	21	1.48
22983483--22983517	6	5.8	6	93	0	61	51	0	31	17	1.45
22984151--22984210	18	3.4	18	79	2	59	35	33	18	13	1.89
22988570--22988867	59	5.1	59	90	1	429	35	2	29	32	1.70
22988628--22988789	30	5.5	30	70	19	135	35	2	27	34	1.71
22988594--22988891	29	10.1	29	67	21	120	35	2	29	32	1.70
22988622--22988838	30	7.3	30	64	18	105	34	2	30	32	1.71
22989933--22989980	23	2.2	21	82	10	53	43	4	0	52	1.20
22990837--22991038	43	4.7	43	94	0	325	17	31	25	26	1.97
22991356--22991512	65	2.4	66	82	3	201	16	24	15	43	1.87
22997010--22997295	18	17.1	18	69	19	136	47	3	0	48	1.20
22997008--22997054	22	2.1	22	84	0	58	53	0	0	46	1.00
22997013--22997266	48	5.2	48	93	2	420	46	3	0	49	1.20
22997159--22997299	8	17.5	8	67	19	55	48	2	0	48	1.13
22998812--22998939	44	2.9	43	86	4	166	27	7	50	14	1.69
22998812--22998880	22	3.1	22	66	29	56	26	7	52	14	1.67
22998828--22998958	44	3.0	44	82	2	147	31	6	46	15	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22998946--22999015	26	2.8	25	82	4	86	24	5	40	30	1.78
22998946--22999022	25	3.0	24	83	10	91	23	5	42	28	1.75
22999133--22999486	41	8.4	42	72	13	237	22	27	25	24	2.00
22999260--22999442	93	2.0	94	84	5	246	19	28	27	25	1.98
22999221--22999482	134	2.0	134	84	3	348	19	27	27	24	1.99
22999353--22999564	81	2.6	83	82	7	229	19	26	26	26	1.99
22999743--22999805	27	2.3	27	97	0	117	49	3	3	44	1.34
22999786--22999828	11	3.9	11	82	8	52	53	4	0	41	1.21
23001259--23001283	12	2.1	12	100	0	50	40	8	8	44	1.63
23001701--23001725	11	2.3	11	100	0	50	28	8	0	64	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144