genome.fa.s7.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  42  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10109296--10109422	62	2.0	62	89	0	191	35	18	18	27	1.94
10109574--10109700	62	2.0	62	89	0	191	35	18	18	27	1.94
10109851--10110099	62	4.0	62	90	1	349	37	15	18	28	1.91
10110244--10110490	62	4.0	62	93	0	388	38	15	18	27	1.91
10110429--10110924	215	2.3	216	85	3	651	38	14	17	29	1.89
10110860--10110986	62	2.0	62	89	0	191	35	18	18	26	1.95
10111137--10111382	62	4.0	62	90	1	352	38	15	17	27	1.91
10110860--10111614	399	1.9	397	83	4	975	39	15	17	27	1.90
10111321--10111816	215	2.3	216	84	3	642	39	13	17	29	1.88
10111752--10111878	62	2.0	62	89	0	191	35	18	18	26	1.95
10112029--10112274	62	4.0	62	90	1	352	38	15	17	27	1.91
10111752--10112506	399	1.9	397	83	4	975	39	15	17	28	1.90
10112213--10112708	215	2.3	216	83	3	624	39	13	17	29	1.88
10112644--10112770	62	2.0	62	89	0	191	35	18	18	27	1.94
10112921--10113166	62	4.0	62	90	1	352	38	15	17	27	1.91
10112644--10113398	399	1.9	397	83	4	975	39	14	17	28	1.89
10113105--10113600	215	2.3	216	83	3	624	39	13	17	29	1.88
10113536--10113662	62	2.0	62	89	0	191	35	18	18	26	1.95
10113813--10114058	62	4.0	62	89	1	343	38	15	17	28	1.90
10113536--10114290	399	1.9	397	83	4	957	39	15	17	28	1.90
10113997--10114492	215	2.3	216	84	3	624	39	13	17	29	1.88
10114428--10114554	62	2.0	62	89	0	191	35	17	19	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10114705--10114950	62	4.0	62	90	1	352	38	15	17	27	1.91
10114428--10115182	399	1.9	397	83	3	964	39	14	17	28	1.90
10114889--10115384	215	2.3	216	83	3	633	39	13	17	29	1.88
10115320--10115446	62	2.0	62	89	0	191	35	18	18	26	1.95
10115597--10115842	62	4.0	62	89	1	343	38	15	17	28	1.90
10115320--10116074	399	1.9	397	83	4	966	39	15	17	28	1.90
10115781--10116276	215	2.3	216	84	3	642	39	13	17	29	1.88
10116212--10116337	62	2.0	61	89	1	189	35	18	19	26	1.94
10116488--10116733	62	4.0	62	90	1	352	38	15	17	27	1.91
10116672--10117167	215	2.3	216	84	3	642	39	13	17	29	1.88
10102109--10129218	892	30.2	891	92	4	44448	39	14	17	28	1.89
10117103--10117229	62	2.0	62	89	0	191	35	18	18	26	1.95
10117380--10117625	62	4.0	62	90	1	352	38	15	17	27	1.91
10117103--10117857	399	1.9	397	83	4	975	39	15	17	27	1.90
10117564--10118059	215	2.3	216	84	3	642	39	13	17	29	1.88
10118275--10118520	62	4.0	62	90	1	352	38	15	17	27	1.91
10118459--10118954	215	2.3	216	84	3	642	39	13	17	29	1.88
10118890--10119015	62	2.0	61	89	1	189	35	18	19	26	1.94
10119166--10119411	62	4.0	62	89	1	343	38	15	17	28	1.90
10119350--10119845	215	2.3	216	84	3	642	39	13	17	29	1.88
10119781--10119906	62	2.0	61	89	1	189	35	18	19	26	1.94
10120057--10120302	62	4.0	62	89	1	343	38	15	17	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10120241--10120736	215	2.3	216	83	3	615	39	13	17	29	1.88
10120672--10120798	62	2.0	62	90	0	200	34	18	19	27	1.95
10120949--10121194	62	4.0	62	89	1	343	38	15	17	28	1.90
10121133--10121627	215	2.3	215	84	3	640	39	13	17	29	1.88
10121563--10121689	62	2.0	62	89	0	191	35	18	18	26	1.95
10121840--10122085	62	4.0	62	90	1	352	38	15	17	27	1.91
10121563--10122317	399	1.9	397	83	4	984	39	15	17	28	1.90
10122024--10122519	215	2.3	216	84	3	633	38	13	17	29	1.88
10122455--10122581	62	2.0	62	89	0	191	35	17	19	27	1.94
10122732--10122977	62	4.0	62	89	1	343	38	15	17	28	1.90
10122455--10123209	399	1.9	397	82	4	948	39	14	17	28	1.90
10122916--10123410	215	2.3	216	84	3	640	39	13	17	29	1.88
10123346--10123472	62	2.0	62	89	0	191	35	18	18	27	1.94
10123623--10123868	62	4.0	62	89	1	343	38	15	17	28	1.90
10123346--10124100	399	1.9	397	83	3	973	39	14	17	28	1.90
10123807--10124302	215	2.3	216	83	3	624	39	13	17	29	1.88
10124238--10124364	62	2.0	62	90	0	200	34	18	19	27	1.95
10124515--10124760	62	4.0	62	89	1	343	38	15	17	28	1.90
10124238--10124992	399	1.9	397	83	3	964	39	14	17	28	1.90
10124699--10125193	215	2.3	216	83	3	631	39	13	16	29	1.88
10125129--10125255	62	2.0	62	89	0	191	35	18	18	26	1.95
10125406--10125651	62	4.0	62	90	1	352	38	15	17	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10125129--10125883	399	1.9	397	83	4	959	38	15	17	28	1.90
10125590--10126085	215	2.3	216	83	4	617	38	13	17	30	1.89
10126021--10126147	62	2.0	62	90	0	200	34	18	19	27	1.95
10126298--10126543	62	4.0	62	89	1	343	38	15	17	28	1.90
10126021--10126775	399	1.9	397	83	4	957	39	14	17	28	1.90
10126482--10126976	215	2.3	216	84	3	640	39	13	17	29	1.88
10126912--10127038	62	2.0	62	89	0	191	35	18	18	27	1.94
10127189--10127434	62	4.0	62	89	1	334	38	15	17	28	1.90
10126912--10127666	399	1.9	397	83	3	964	39	14	17	28	1.89
10127373--10127868	215	2.3	216	82	3	606	39	13	17	29	1.88
10127804--10127930	62	2.0	62	89	0	191	35	17	19	27	1.94
10128081--10128326	62	4.0	62	89	1	334	38	15	17	28	1.90
10127804--10128558	399	1.9	397	82	3	946	39	14	17	28	1.89
10128265--10128760	215	2.3	216	83	3	615	39	13	16	29	1.88
10128696--10128822	62	2.0	62	89	0	191	35	18	18	27	1.94
10129005--10129397	62	6.3	62	89	0	588	38	14	18	28	1.90
10129363--10129840	215	2.2	217	83	6	587	38	13	17	30	1.89
10129792--10129902	54	2.1	54	87	0	159	38	15	19	26	1.91
10130108--10130409	62	4.9	62	88	0	426	37	15	19	27	1.92
10129573--10130295	332	2.2	324	80	9	790	39	15	18	26	1.91
10130108--10130409	123	2.4	124	87	1	417	37	15	19	27	1.92
10130778--10130884	54	2.0	54	88	0	160	41	18	17	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10131092--10131339	62	4.0	61	93	2	379	39	16	17	26	1.91
10130623--10131280	340	2.0	331	83	5	838	39	16	18	25	1.91
10130776--10131542	404	1.9	393	81	6	909	38	17	17	25	1.92
10131708--10131892	62	3.0	63	80	3	214	40	16	19	24	1.91
10131626--10132223	327	1.8	324	85	2	840	38	15	19	26	1.91
10132035--10132282	62	4.0	62	90	0	379	38	15	17	28	1.91
10132657--10132842	62	3.0	62	81	2	221	40	15	18	24	1.90
10132649--10132836	63	3.0	63	81	2	227	40	15	19	23	1.91
10132993--10133240	62	4.0	62	90	0	379	38	15	17	28	1.91
10133199--10133674	215	2.2	217	83	5	579	38	14	17	29	1.90
10133630--10133736	54	2.0	54	85	3	144	39	18	18	23	1.92
10133944--10134191	62	4.0	61	91	4	374	38	16	18	26	1.92
10130615--10139851	957	9.7	951	92	2	15052	38	15	18	27	1.91
10134130--10134620	215	2.3	212	79	7	508	38	14	17	28	1.90
10134566--10134749	62	3.0	62	79	2	199	39	16	18	25	1.91
10134560--10134745	63	3.0	63	79	2	205	39	16	18	24	1.91
10134901--10135148	62	4.0	62	91	0	388	37	15	18	28	1.91
10135107--10135582	215	2.2	217	83	5	590	38	14	17	29	1.89
10135538--10135644	54	2.0	54	87	3	153	40	18	18	22	1.92
10135852--10136099	62	4.0	61	91	4	374	38	16	18	26	1.92
10136038--10136528	215	2.3	212	79	7	508	38	14	17	28	1.90
10136474--10136657	62	3.0	62	79	2	199	39	16	18	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10136468--10136653	63	3.0	63	79	2	205	39	16	18	24	1.91
10136809--10137056	62	4.0	62	89	0	370	36	15	18	28	1.92
10137015--10137490	215	2.2	216	83	5	579	38	14	17	29	1.90
10137446--10137552	54	2.0	54	85	3	144	39	19	18	22	1.93
10137759--10138006	62	4.0	62	93	2	401	37	16	18	27	1.92
10137945--10138435	215	2.3	212	79	6	515	38	14	18	29	1.90
10138375--10138560	63	3.0	62	79	5	205	39	16	19	24	1.92
10138716--10138963	62	4.0	62	89	0	370	36	15	18	28	1.92
10138922--10139397	215	2.2	216	83	5	579	38	14	17	29	1.90
10139353--10139459	54	2.0	54	85	3	144	39	19	18	22	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144