genome.fa.s7.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  78  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17348276--17348338	32	1.9	33	87	3	92	41	14	7	36	1.75
17348321--17348373	27	2.0	27	92	3	90	52	15	7	24	1.68
17357771--17357845	32	2.2	33	88	6	107	37	6	5	50	1.51
17360377--17360419	13	3.6	13	76	23	58	34	0	0	65	0.93
17360375--17360418	22	2.0	22	100	0	88	36	0	0	63	0.95
17364525--17364603	30	2.6	30	92	4	124	32	25	15	26	1.95
17366249--17366291	15	2.9	15	89	0	68	53	0	16	30	1.43
17372085--17372119	18	1.9	18	88	0	52	60	14	8	17	1.58
17372890--17372920	16	1.9	16	93	0	53	29	6	3	61	1.37
17376197--17376228	16	2.1	15	94	5	55	62	0	18	18	1.33
17382031--17382094	2	32.0	2	100	0	128	50	0	0	50	1.00
17394798--17394860	23	2.8	22	90	4	74	47	11	11	30	1.74
17394806--17394860	23	2.4	23	96	0	101	45	12	10	30	1.77
17398020--17398277	76	3.4	75	74	11	229	44	14	10	31	1.78
17398588--17398645	28	2.1	27	83	3	71	58	13	6	20	1.58
17399001--17399090	32	2.8	32	96	0	162	48	12	10	28	1.73
17402129--17402167	15	2.5	16	83	8	53	23	5	0	71	1.05
17402138--17402194	19	3.1	18	80	12	53	24	8	1	64	1.31
17402158--17402197	19	2.1	19	86	9	55	30	12	2	55	1.50
17403181--17403214	15	2.3	15	89	0	50	35	23	2	38	1.70
17411346--17411385	14	2.6	16	88	11	57	40	0	2	57	1.12
17415129--17415313	57	3.2	56	81	7	194	27	8	10	53	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17415514--17415603	31	2.8	31	78	6	92	50	7	15	26	1.71
17415460--17415638	89	2.0	89	81	6	211	48	9	15	26	1.76
17418477--17418510	6	5.7	6	100	0	68	67	0	0	32	0.91
17422346--17422408	30	2.1	30	93	0	108	53	19	9	17	1.70
17422941--17422991	26	2.0	26	92	0	84	29	29	15	25	1.96
17424734--17425023	158	1.8	158	89	0	454	22	24	24	28	1.99
17433106--17433150	2	22.5	2	95	0	81	51	2	0	46	1.13
17433840--17434097	132	2.0	132	88	0	390	22	23	24	29	1.99
17439562--17439595	17	2.0	17	88	0	50	50	2	14	32	1.58
17446723--17446813	37	2.5	37	96	0	164	23	19	28	28	1.98
17446974--17447029	17	3.3	17	73	14	53	53	3	16	26	1.59
17447893--17447936	16	2.8	16	82	6	54	36	11	0	52	1.38
17452024--17452049	2	13.0	2	100	0	52	50	0	0	50	1.00
17454040--17454221	30	6.1	29	75	5	132	36	19	7	36	1.81
17458762--17458796	16	2.1	17	89	5	54	82	0	17	0	0.66
17459655--17459704	9	5.4	9	80	2	55	82	0	16	2	0.77
17459668--17459705	5	8.0	5	82	11	53	78	0	21	0	0.74
17462527--17462660	30	4.5	29	77	7	117	35	18	6	39	1.77
17464728--17464765	20	1.9	20	88	0	58	15	21	23	39	1.92
17470981--17471062	2	41.5	2	75	11	53	54	2	2	40	1.26
17470990--17471052	24	2.6	25	87	10	94	57	3	3	36	1.31
17472968--17473084	50	2.3	50	88	0	171	21	23	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17472968--17473104	50	2.7	50	85	2	159	20	20	21	37	1.95
17480521--17480564	21	2.2	19	84	15	54	52	0	13	34	1.41
17480521--17480564	20	2.2	21	84	15	58	52	0	13	34	1.41
17482772--17482810	20	2.0	20	100	0	78	25	23	10	41	1.86
17485890--17486013	45	2.7	45	88	1	176	25	16	25	31	1.97
17486463--17486624	49	3.3	49	84	1	211	20	28	12	38	1.89
17487498--17487536	10	4.0	10	83	6	53	0	15	0	84	0.62
17489325--17489477	74	2.1	74	96	1	281	18	24	13	43	1.86
17496703--17496740	19	2.0	20	89	5	60	36	0	0	63	0.95
17496835--17496880	19	2.4	19	96	0	83	21	19	0	58	1.39
17497313--17497352	18	2.2	18	86	0	53	30	0	2	67	1.04
17497387--17497426	17	2.3	18	86	4	55	45	2	2	50	1.28
17501603--17501646	19	2.4	18	81	7	52	47	2	15	34	1.58
17501871--17502051	57	3.1	58	80	9	183	37	1	23	37	1.65
17501879--17502052	29	6.0	29	82	7	167	37	1	24	36	1.66
17503861--17504166	160	1.9	162	82	5	388	23	18	16	41	1.90
17504023--17504293	123	2.2	123	84	2	348	22	20	16	40	1.91
17504202--17504293	48	1.9	48	88	4	141	22	25	14	38	1.92
17504221--17504378	85	1.9	85	88	5	239	23	24	15	37	1.93
17504145--17504663	207	2.5	207	86	0	707	22	22	17	37	1.94
17504871--17505148	46	6.3	44	85	5	359	26	19	22	31	1.98
17504871--17505147	84	3.2	84	85	7	349	26	19	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17505488--17505807	49	6.5	49	80	3	302	16	29	16	37	1.91
17505469--17505802	99	3.4	98	82	1	391	16	29	17	37	1.91
17512185--17512346	28	5.7	28	76	12	134	38	0	24	37	1.56
17512209--17512371	58	2.8	58	85	4	204	35	0	25	39	1.56
17512204--17512380	30	6.1	30	81	8	168	37	0	23	38	1.55
17513250--17513399	4	37.5	4	100	0	300	25	0	24	50	1.50
17515810--17515836	13	2.1	13	100	0	54	44	7	18	29	1.77
17517285--17517352	27	2.4	28	80	9	68	30	5	0	63	1.18
17517734--17517765	16	2.0	16	93	0	55	15	12	34	37	1.85
17526142--17526194	15	3.5	15	80	14	63	54	7	0	37	1.29
17526654--17526703	25	2.0	25	96	0	91	40	4	18	38	1.69
17527215--17527261	12	3.9	12	82	0	58	6	4	17	72	1.22
17527172--17527262	45	2.0	44	85	2	119	4	5	17	72	1.21
17528779--17528803	12	2.1	12	100	0	50	28	16	8	48	1.74
17546544--17546612	29	2.4	28	75	15	68	39	1	8	50	1.42
17547139--17547180	22	1.9	22	85	0	57	33	9	7	50	1.62
17552241--17552274	17	1.9	18	94	5	61	29	2	26	41	1.70
17555911--17555969	31	1.9	32	86	6	86	42	10	11	35	1.76
17556011--17556104	46	2.0	46	100	0	188	32	10	8	47	1.68
17556677--17556736	20	3.0	21	72	16	54	35	1	0	63	1.05
17557468--17557508	22	2.0	20	85	9	55	60	2	0	36	1.10
17557860--17557910	14	3.7	14	79	12	61	39	5	1	52	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17562246--17562353	29	3.8	29	80	11	107	25	10	1	62	1.37
17566776--17566811	11	3.3	11	88	0	54	80	0	19	0	0.71
17566781--17566832	15	3.6	14	82	7	59	76	0	19	3	0.93
17566775--17566825	22	2.2	24	89	6	79	78	0	19	1	0.85
17567905--17568060	50	3.1	50	82	1	188	43	18	10	27	1.82
17568210--17568848	45	15.0	44	79	9	468	33	24	15	26	1.95
17568210--17568841	124	5.0	126	75	15	412	33	24	15	26	1.95
17568369--17568591	40	5.7	37	73	18	152	33	25	14	27	1.94
17570698--17570767	31	2.3	30	85	7	95	27	5	1	65	1.23
17571018--17571068	24	2.1	24	96	0	93	21	7	9	60	1.53
17573435--17573488	28	2.0	28	85	3	74	31	14	27	25	1.95
17574858--17575134	29	9.5	27	70	21	152	37	1	25	34	1.67
17574858--17575134	57	4.8	58	85	8	341	37	1	25	34	1.67
17575134--17575278	30	4.9	29	77	8	130	33	3	22	40	1.71
17575200--17575288	30	2.9	29	81	8	97	37	3	21	38	1.70
17575134--17575288	60	2.6	59	78	5	168	33	3	22	40	1.70
17576232--17576293	15	4.3	15	71	21	51	45	4	0	50	1.23
17576234--17576264	12	2.6	12	94	0	53	51	0	0	48	1.00
17577110--17577169	17	3.5	17	79	0	57	51	5	3	40	1.40
17577535--17578364	200	4.1	200	91	1	1268	20	22	21	36	1.95
17581867--17582084	86	2.5	86	86	2	287	34	12	11	40	1.80
17583245--17583309	30	2.2	30	83	5	78	7	20	27	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17586724--17586787	29	2.2	30	82	2	76	43	3	6	46	1.44
17587130--17587196	34	2.1	29	86	13	89	55	1	1	41	1.18
17587961--17588007	24	2.0	24	88	12	71	38	0	0	61	0.96
17589203--17589267	29	2.2	30	83	8	80	44	3	4	47	1.39
17590289--17590348	21	3.0	19	81	13	59	31	1	8	58	1.38
17592888--17592913	1	26.0	1	100	0	52	100	0	0	0	0.00
17593278--17593324	24	1.9	25	91	4	78	53	14	4	27	1.60
17594487--17595054	302	1.9	298	82	5	714	38	12	9	39	1.76
17601672--17601914	88	2.8	83	82	10	285	38	18	9	32	1.84
17601981--17602026	7	6.6	7	92	7	76	84	0	0	15	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144