genome.fa.s7.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  53  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10487989--10488023	3	11.7	3	87	0	52	34	5	0	60	1.21
10487989--10488023	15	2.3	15	100	0	70	34	5	0	60	1.21
10488187--10489084	43	20.9	43	69	13	431	20	26	35	17	1.95
10488457--10488957	172	2.9	172	93	0	867	21	26	34	16	1.95
10488457--10488957	86	5.8	85	88	2	720	21	26	34	16	1.95
10488414--10488989	172	3.3	172	88	4	747	21	27	34	17	1.95
10489721--10490889	43	27.4	43	76	13	921	16	28	35	19	1.94
10489721--10490889	86	13.7	85	83	6	1025	16	28	35	19	1.94
10490531--10490606	35	2.2	35	85	0	107	15	31	31	21	1.94
10498394--10498430	3	12.3	3	100	0	74	35	0	0	64	0.94
10498497--10498531	3	11.7	3	87	0	52	34	5	0	60	1.21
10498497--10498531	15	2.3	15	100	0	70	34	5	0	60	1.21
10498695--10499592	43	20.9	43	69	13	431	20	26	35	17	1.95
10498965--10499465	172	2.9	172	93	0	867	21	26	34	16	1.95
10498965--10499465	86	5.8	85	88	2	720	21	26	34	16	1.95
10498922--10499497	172	3.3	172	88	4	747	21	27	34	17	1.95
10500229--10501398	43	27.4	43	76	13	930	16	28	35	19	1.94
10500229--10501398	86	13.7	86	83	6	1041	16	28	35	19	1.94
10501040--10501115	35	2.2	35	85	0	107	15	31	31	21	1.94
10507583--10507834	43	5.8	43	69	15	160	19	36	26	18	1.94
10507566--10507751	89	2.1	85	81	10	216	18	36	25	19	1.95
10515148--10515445	43	7.0	43	90	7	466	18	34	32	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10515143--10515445	128	2.4	128	89	6	465	18	34	32	14	1.92
10515292--10515491	84	2.5	79	84	7	239	20	33	31	15	1.93
10515539--10515857	83	4.0	81	81	14	330	18	37	25	18	1.93
10515698--10515830	43	3.2	43	66	20	109	16	39	24	19	1.92
10515539--10515857	164	2.0	153	81	11	365	18	37	25	18	1.93
10515528--10515821	83	3.6	83	85	8	360	18	37	25	19	1.94
10516717--10517614	43	20.9	43	69	12	452	17	35	26	20	1.95
10516724--10517614	86	10.3	86	82	6	532	17	35	26	20	1.95
10516844--10517344	172	2.9	172	93	0	867	16	34	26	21	1.95
10517778--10517812	3	11.7	3	87	0	52	60	0	5	34	1.21
10517778--10517812	15	2.3	15	100	0	70	60	0	5	34	1.21
10517879--10517915	3	12.3	3	100	0	74	64	0	0	35	0.94
10525420--10526589	43	27.4	43	77	11	1020	19	35	28	16	1.94
10525660--10525778	35	3.2	35	82	9	112	21	33	30	15	1.94
10525660--10525817	78	2.0	78	86	2	219	20	35	27	16	1.94
10527226--10528123	43	20.9	43	69	12	452	17	35	26	20	1.95
10527233--10528123	86	10.3	86	82	6	532	17	35	26	20	1.95
10527353--10527853	172	2.9	172	93	0	867	16	34	26	21	1.95
10528287--10528321	3	11.7	3	87	0	52	60	0	5	34	1.21
10528287--10528321	15	2.3	15	100	0	70	60	0	5	34	1.21
10528388--10528424	3	12.3	3	100	0	74	64	0	0	35	0.94
10535929--10537098	43	27.4	43	77	11	1020	19	35	28	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10536169--10536287	35	3.2	35	82	9	112	21	33	30	15	1.94
10536169--10536326	78	2.0	78	86	2	219	20	35	27	16	1.94
10537735--10538632	43	20.9	43	69	12	452	17	35	26	20	1.95
10537742--10538632	86	10.3	86	82	6	532	17	35	26	20	1.95
10537862--10538362	172	2.9	172	93	0	867	16	34	26	21	1.95
10538796--10538830	3	11.7	3	87	0	52	60	0	5	34	1.21
10538796--10538830	15	2.3	15	100	0	70	60	0	5	34	1.21
10538897--10538933	3	12.3	3	100	0	74	64	0	0	35	0.94
10550981--10552363	86	15.9	86	74	12	665	21	25	34	19	1.96
10551184--10551297	42	2.7	41	81	9	124	21	22	32	23	1.98
10551314--10552447	43	26.1	43	67	15	179	21	24	35	18	1.96
10550988--10551458	260	1.8	256	88	3	667	21	24	34	18	1.96
10551431--10551694	129	2.1	128	88	2	388	21	24	33	20	1.97
10551460--10551736	129	2.1	129	82	2	306	21	24	34	19	1.97
10551558--10551867	171	1.8	173	90	2	500	21	24	34	19	1.96
10551723--10551996	130	2.1	129	90	2	426	20	24	35	19	1.96
10552205--10552322	53	2.2	53	89	1	175	25	26	33	15	1.95
10552070--10552447	184	2.1	182	87	3	546	20	25	35	18	1.95
10552253--10552483	86	2.7	86	79	12	217	19	24	36	18	1.94
10551988--10552490	270	1.9	267	84	7	678	20	25	35	18	1.95
10552294--10552490	43	4.6	44	74	9	167	18	25	37	19	1.94
10552253--10552490	43	5.5	43	71	12	166	19	25	36	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10553121--10554237	43	26.4	43	72	13	696	18	26	34	20	1.96
10553121--10553346	83	2.7	84	81	6	271	17	30	32	19	1.95
10553964--10554237	85	3.2	84	88	4	417	14	27	35	21	1.93
10553965--10554237	126	2.1	127	90	4	435	15	27	35	21	1.93
10566280--10566316	3	12.3	3	100	0	74	35	0	0	64	0.94
10566378--10566412	3	11.7	3	87	0	52	34	5	0	60	1.21
10566378--10566412	15	2.3	15	100	0	70	34	5	0	60	1.21
10566576--10567088	43	11.9	43	68	13	223	20	26	34	18	1.95
10566576--10566860	86	3.3	86	83	1	349	18	27	35	18	1.95
10566717--10567002	129	2.2	130	87	0	412	19	27	34	18	1.95
10566846--10567179	86	4.0	86	85	5	434	21	25	35	17	1.95
10566846--10567179	173	2.0	165	89	4	515	21	25	35	17	1.95
10566769--10567034	130	2.1	129	82	3	320	21	27	33	17	1.96
10567288--10567412	65	1.9	67	86	6	184	21	32	30	15	1.94
10567353--10567613	129	2.0	129	89	2	400	18	27	36	17	1.94
10567353--10567613	86	3.0	87	80	10	238	18	27	36	17	1.94
10567353--10567613	43	6.1	42	74	14	203	18	27	36	17	1.94
10568246--10569415	43	27.4	43	76	13	930	16	28	35	19	1.94
10568246--10569415	86	13.7	86	83	6	1041	16	28	35	19	1.94
10569057--10569132	35	2.2	35	85	0	107	15	31	31	21	1.94
10576920--10576956	3	12.3	3	100	0	74	35	0	0	64	0.94
10577023--10577057	3	11.7	3	87	0	52	34	5	0	60	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10577023--10577057	15	2.3	15	100	0	70	34	5	0	60	1.21
10577221--10578118	43	20.9	43	69	13	431	20	26	35	17	1.95
10577491--10577991	172	2.9	172	93	0	867	21	26	34	16	1.95
10577491--10577991	86	5.8	85	88	2	720	21	26	34	16	1.95
10577448--10578023	172	3.3	172	88	4	747	21	27	34	17	1.95
10578755--10579924	43	27.4	43	76	13	930	16	28	35	19	1.94
10578755--10579924	86	13.7	86	83	6	1041	16	28	35	19	1.94
10579566--10579641	35	2.2	35	85	0	107	15	31	31	21	1.94
10587429--10587465	3	12.3	3	100	0	74	35	0	0	64	0.94
10587532--10587566	3	11.7	3	87	0	52	34	5	0	60	1.21
10587532--10587566	15	2.3	15	100	0	70	34	5	0	60	1.21
10587730--10588627	43	20.9	43	69	13	431	20	26	35	17	1.95
10588000--10588500	172	2.9	172	93	0	867	21	26	34	16	1.95
10588000--10588500	86	5.8	85	88	2	720	21	26	34	16	1.95
10587957--10588532	172	3.3	172	88	4	747	21	27	34	17	1.95
10589264--10590433	43	27.4	43	76	13	930	16	28	35	19	1.94
10589264--10590433	86	13.7	86	83	6	1041	16	28	35	19	1.94
10590075--10590150	35	2.2	35	85	0	107	15	31	31	21	1.94
10597700--10597729	3	10.0	3	100	0	60	33	0	0	66	0.92
10597801--10597829	14	2.1	14	100	0	58	34	6	0	58	1.25
10598129--10598416	129	2.2	132	83	5	377	19	27	35	18	1.95
10597989--10598273	85	3.3	85	80	7	317	18	26	36	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10598129--10598416	44	6.6	43	66	18	146	19	27	35	18	1.95
10598258--10598658	87	4.6	84	79	11	450	20	26	35	17	1.94
10598262--10598658	173	2.3	175	88	6	583	20	26	35	17	1.95
10599521--10599555	3	11.7	3	100	0	70	34	0	0	65	0.93
10599624--10599657	14	2.3	15	95	5	61	35	5	0	58	1.22
10599820--10600716	43	20.9	43	69	13	422	20	26	35	17	1.95
10600090--10600589	171	2.9	172	93	0	858	21	26	35	16	1.95
10600090--10600589	86	5.8	85	88	3	711	21	26	35	16	1.95
10601355--10602438	43	25.4	43	77	12	908	16	28	35	19	1.94
10601356--10602438	129	8.5	129	78	8	1034	16	28	35	19	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144