genome.fa.s7.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  12  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2894797--2894881	30	2.9	29	85	7	109	55	1	2	41	1.20
2894829--2894872	23	1.9	23	90	0	70	59	0	2	38	1.10
2894829--2894872	11	3.9	11	88	5	61	59	0	2	38	1.10
2894809--2894881	29	2.4	30	86	6	94	57	1	2	38	1.22
2895209--2895395	76	2.5	76	94	1	322	32	18	14	34	1.91
2895351--2895440	45	2.0	45	95	0	162	36	14	15	33	1.88
2895275--2895516	121	2.0	121	95	0	430	34	16	15	34	1.90
2895396--2895714	76	4.2	76	95	0	566	32	15	15	35	1.90
2895228--2895592	197	1.9	197	98	0	703	33	16	15	34	1.90
2907898--2908152	58	4.4	58	85	6	329	34	3	30	32	1.73
2907941--2908149	29	7.2	28	66	12	102	33	2	30	33	1.71
2908695--2908729	18	1.9	18	88	0	52	31	14	11	42	1.81
2909726--2909769	11	3.9	11	82	5	52	56	0	2	40	1.11
2931925--2932037	61	2.0	61	82	10	148	24	4	15	55	1.58
2934411--2934493	21	3.8	21	74	13	78	68	18	4	8	1.33
2938859--2938946	43	2.0	43	100	0	176	47	2	2	47	1.27
2944157--2944203	24	2.0	24	83	8	60	55	29	6	8	1.55
2945864--2945980	49	2.4	49	82	5	146	41	16	20	21	1.90
2945901--2946008	49	2.2	49	81	3	119	42	15	21	20	1.89
2947768--2947843	31	2.6	30	81	8	84	34	25	3	36	1.74
2951972--2952083	59	1.9	59	88	3	172	25	16	14	42	1.86
2951975--2952126	59	2.5	60	79	4	155	25	16	13	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2952276--2952469	31	6.4	31	69	17	140	46	13	16	23	1.82
2952394--2952448	28	2.0	28	86	13	78	50	9	18	21	1.74
2952276--2952469	91	2.1	90	82	4	221	46	13	16	23	1.82
2954057--2954155	44	2.2	44	82	10	130	41	31	4	23	1.73
2956725--2956852	62	2.1	62	100	0	256	57	8	4	29	1.49
2971058--2971502	195	2.3	192	79	10	449	25	25	20	28	1.99
2974860--2974891	16	2.0	16	93	0	55	40	0	12	46	1.42
2980667--2980724	25	2.3	27	80	19	63	15	20	36	27	1.93
2981804--2981856	3	17.7	3	88	0	79	0	37	0	62	0.96
2986738--2986781	19	2.4	20	85	14	60	36	2	0	61	1.09
2998057--2998112	2	28.0	2	100	0	112	50	0	0	50	1.00
3001610--3001685	31	2.5	32	78	8	86	46	11	7	34	1.70
3005086--3005153	31	2.3	30	82	5	84	41	10	10	38	1.73
3009035--3009066	3	10.7	3	100	0	64	34	0	0	65	0.93
3011709--3011760	18	3.1	17	77	5	52	34	0	1	63	1.06
3015903--3016128	29	7.6	30	76	7	115	38	5	22	34	1.78
3015993--3016321	30	11.1	29	80	9	267	38	2	21	37	1.67
3015965--3016322	29	12.2	30	79	11	264	37	2	22	37	1.69
3015964--3016322	59	6.1	58	78	8	325	38	2	22	37	1.69
3017417--3017482	13	5.2	13	80	5	55	30	1	3	65	1.17
3017417--3017482	3	21.0	3	72	9	51	30	1	3	65	1.17
3018113--3018177	17	3.8	17	78	8	78	52	4	1	41	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3018099--3018176	6	13.8	6	70	22	53	53	3	1	41	1.27
3018099--3018174	23	3.4	22	75	21	77	55	3	1	39	1.27
3018455--3019333	209	4.2	209	90	1	1271	22	22	18	36	1.95
3027932--3028162	30	7.8	31	73	13	141	37	6	22	33	1.79
3027998--3028309	30	10.6	29	75	7	202	35	2	23	38	1.69
3027998--3028309	59	5.3	58	75	6	227	35	2	23	38	1.69
3027998--3028217	58	3.8	58	77	4	201	37	3	21	37	1.71
3027998--3028226	118	1.9	117	81	6	275	37	3	21	37	1.71
3029404--3029443	13	3.1	13	85	0	53	27	2	5	65	1.27
3030073--3030130	10	5.8	10	77	22	68	55	1	0	43	1.10
3030087--3030150	17	3.8	17	79	8	76	51	4	1	42	1.32
3030075--3030150	40	1.9	40	83	5	100	51	3	1	43	1.28
3032157--3032199	18	2.4	18	88	0	59	32	32	13	20	1.92
3032280--3032388	15	7.3	15	90	0	155	23	10	25	40	1.86
3032278--3032389	45	2.5	45	92	0	197	24	9	25	41	1.85
3041541--3041621	42	1.9	42	92	0	135	12	27	34	25	1.92
3044683--3044759	21	3.7	21	77	6	68	27	12	27	32	1.93
3045831--3045881	21	2.3	22	86	10	68	54	1	1	41	1.22
3046947--3046975	2	14.5	2	100	0	58	48	0	0	51	1.00
3058645--3058952	144	2.1	144	82	5	365	31	16	25	26	1.97
3065723--3065823	52	1.9	52	82	4	123	30	13	10	44	1.79
3065981--3066024	21	2.0	22	91	4	72	20	6	0	72	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3066126--3066208	17	4.9	17	87	0	103	44	0	2	53	1.13
3066120--3066195	28	2.7	28	80	8	75	42	0	3	53	1.19
3066140--3066194	11	4.9	11	86	8	76	43	0	1	54	1.10
3066133--3066195	6	11.0	6	81	10	78	46	0	1	52	1.10
3076700--3076754	27	2.0	27	89	6	85	34	10	12	41	1.78
3084936--3085085	72	2.1	72	88	0	219	30	12	28	28	1.93
3087648--3087725	30	2.6	29	79	4	84	66	3	3	25	1.26
3088116--3088173	27	2.1	28	90	6	93	56	0	0	43	0.99
3088459--3088499	22	1.9	22	85	14	59	31	7	2	58	1.38
3099464--3099493	12	2.5	12	100	0	60	6	20	16	56	1.62
3101115--3101182	15	4.5	15	90	0	100	10	13	17	58	1.62
3101682--3101724	15	3.1	13	84	15	59	79	2	0	18	0.85
3106477--3106507	9	3.4	9	90	0	53	41	22	12	22	1.88
3112324--3112440	62	1.9	61	82	5	148	51	4	2	41	1.35
3112425--3112489	25	2.6	25	76	13	62	50	4	1	43	1.32
3117451--3117498	25	1.9	25	86	0	69	10	18	43	27	1.82
3118676--3118743	15	4.5	15	90	0	100	58	17	13	10	1.62
3134442--3134485	20	2.2	20	95	0	79	43	4	11	40	1.61
3139142--3139166	13	1.9	13	100	0	50	32	32	4	32	1.76
3143399--3143517	49	2.4	49	87	6	161	50	1	0	47	1.17
3143400--3143512	11	10.4	11	71	21	62	50	0	0	47	1.13
3143406--3143485	22	3.4	22	75	21	74	46	1	0	52	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3143564--3143594	16	1.9	16	100	0	62	6	32	3	58	1.40
3144905--3144947	21	2.0	21	82	13	52	44	2	4	48	1.36
3147446--3147480	18	1.9	18	94	0	61	48	2	0	48	1.16
3148267--3148313	2	23.5	2	100	0	94	51	0	0	48	1.00
3148837--3148862	13	2.0	13	100	0	52	30	0	0	69	0.89
3149936--3150176	30	8.2	30	82	4	267	33	1	26	38	1.67
3149937--3150176	90	2.7	89	85	3	299	33	1	26	38	1.67
3151964--3152268	39	7.8	39	75	10	182	24	20	30	24	1.99
3151964--3152270	78	3.9	76	75	9	253	24	20	30	24	1.99
3151984--3152266	155	1.8	156	83	3	374	25	19	31	24	1.98
3152255--3152345	41	2.2	42	88	3	132	32	16	19	30	1.94
3153253--3153302	26	1.9	26	95	0	91	34	18	8	40	1.79
3157279--3157591	30	10.7	30	77	6	257	30	2	27	38	1.71
3157279--3157589	29	10.6	28	76	11	166	30	2	27	38	1.71
3157279--3157568	58	5.0	57	81	8	271	30	2	27	38	1.71
3157278--3157589	59	5.3	57	77	10	258	31	2	27	38	1.71
3161453--3161495	22	1.9	23	85	4	61	51	0	0	48	1.00
3163483--3163550	11	5.6	12	73	13	50	45	0	1	52	1.09
3166102--3166151	16	3.0	16	76	5	55	24	0	8	68	1.16
3166945--3166979	18	1.9	18	94	0	61	48	0	0	51	1.00
3181796--3181862	30	2.1	30	81	8	71	28	8	22	40	1.84
3187721--3187905	86	2.2	86	98	0	361	25	32	10	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3188506--3188593	44	2.0	44	90	0	140	47	11	13	27	1.77
3189536--3189567	13	2.5	13	100	0	64	12	18	15	53	1.73
3200981--3201037	25	2.3	25	78	6	62	50	0	3	45	1.18
3204536--3204586	24	2.1	24	92	0	84	25	9	7	56	1.58
3204536--3204598	24	2.6	24	87	0	72	26	12	9	50	1.71
3206759--3206992	52	4.5	52	91	2	346	23	14	25	36	1.92
3208724--3208774	24	2.1	24	92	0	84	25	9	5	58	1.52
3210182--3210215	5	7.0	5	86	6	52	20	2	0	76	0.92
3210182--3210214	14	2.3	15	89	5	50	21	3	0	75	0.93
3210694--3210746	17	3.1	17	83	0	61	37	7	3	50	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144