genome.fa.s7.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  76  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16804288--16804606	89	3.6	88	81	6	340	39	1	24	35	1.65
16804288--16804602	59	5.3	59	79	12	283	39	1	24	34	1.65
16809499--16809598	48	2.1	48	100	0	200	38	8	4	50	1.51
16809728--16810092	182	2.0	182	87	2	518	28	18	24	28	1.98
16823896--16823937	19	2.2	19	86	0	57	21	16	21	40	1.91
16823922--16823947	12	2.2	12	100	0	52	15	15	23	46	1.83
16847127--16847180	25	2.2	25	86	6	74	50	7	5	37	1.54
16849778--16849812	19	1.9	17	88	11	52	20	2	11	65	1.37
16849778--16849818	18	2.2	19	83	12	50	21	4	9	63	1.44
16853756--16853803	22	2.2	21	78	10	51	22	20	2	54	1.55
16861049--16861096	22	2.2	21	78	10	51	22	20	2	54	1.55
16866964--16867000	18	2.1	18	100	0	74	37	21	5	35	1.77
16869762--16869814	2	26.0	2	77	11	54	47	3	1	47	1.31
16875123--16875192	28	2.5	28	88	0	95	40	25	20	14	1.90
16875411--16875527	25	4.6	25	84	1	126	34	27	17	21	1.95
16880161--16880207	17	2.8	17	93	0	76	48	14	19	17	1.81
16880802--16880826	12	2.1	12	100	0	50	16	28	0	56	1.41
16882774--16882818	21	2.1	22	91	4	74	51	31	2	15	1.56
16882852--16882903	27	1.9	27	84	0	68	19	19	21	40	1.92
16884125--16884154	6	4.8	6	92	8	51	33	0	0	66	0.92
16893914--16894073	29	5.3	29	71	13	101	32	5	16	46	1.68
16893986--16894075	31	3.0	32	80	12	109	32	4	16	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16912526--16912753	51	4.5	51	92	1	368	33	25	11	29	1.91
16912472--16912757	153	1.9	155	87	5	429	33	24	12	29	1.92
16919099--16919153	21	2.4	23	82	14	62	41	30	7	20	1.79
16923436--16923483	17	2.8	18	75	9	55	54	8	16	20	1.68
16930008--16930054	18	2.6	18	86	6	60	21	19	29	29	1.97
16937060--16937295	51	4.6	51	93	1	384	31	14	22	31	1.94
16944321--16944506	51	3.6	51	88	0	273	31	13	23	31	1.93
16948721--16948808	46	2.0	43	91	6	140	18	13	30	37	1.89
16948724--16948818	46	2.1	44	86	9	131	20	12	30	36	1.89
16953343--16953402	30	2.0	30	90	6	95	40	11	3	45	1.57
16960954--16960983	14	2.1	14	93	0	51	60	0	0	40	0.97
16962208--16962240	2	16.5	2	100	0	66	48	0	0	51	1.00
16966786--16966890	52	2.0	52	83	3	131	50	8	2	38	1.48
16967011--16967055	21	2.1	21	87	0	63	53	6	17	22	1.67
16967701--16967760	17	3.4	17	76	19	52	25	1	0	73	0.93
16967870--16967904	14	2.4	15	90	4	54	34	2	0	62	1.10
16968064--16968090	2	13.5	2	100	0	54	48	0	0	51	1.00
16969535--16969605	35	2.0	35	94	0	124	49	11	15	23	1.77
16971311--16971335	13	1.9	13	100	0	50	0	20	0	80	0.72
16972237--16972266	8	3.8	8	90	0	51	40	23	0	36	1.55
16972652--16972695	19	2.2	20	84	11	56	36	2	2	59	1.23
16973660--16973684	11	2.3	11	100	0	50	56	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16974227--16974275	20	2.6	19	84	12	66	57	10	0	32	1.32
16974227--16974278	19	2.8	20	88	8	74	57	9	0	32	1.31
16974235--16974288	19	2.8	19	86	8	74	57	5	0	37	1.22
16974246--16974304	19	3.0	21	80	11	63	57	5	0	37	1.21
16974295--16974331	18	2.1	18	90	10	58	51	0	0	48	1.00
16985414--16985495	36	2.3	37	87	6	132	40	7	17	35	1.77
16988967--16989005	11	3.5	11	86	13	62	74	0	15	10	1.07
16988967--16989008	22	1.9	22	100	0	84	73	0	16	9	1.08
16990957--16991337	52	7.3	52	86	2	489	36	22	13	28	1.92
16994336--16994428	23	4.1	23	91	1	143	44	17	5	33	1.71
16994766--16994927	36	4.5	36	86	3	236	36	21	11	30	1.88
16994756--16994927	72	2.4	72	92	0	272	36	21	10	31	1.87
16998061--16998143	36	2.4	33	78	11	87	12	24	1	62	1.36
17005078--17005189	60	1.9	59	90	5	181	24	16	13	45	1.83
17005412--17005488	31	2.5	31	80	2	84	48	9	15	27	1.75
17005476--17005528	28	1.9	27	85	11	72	50	7	15	26	1.70
17005612--17005674	9	7.1	9	75	12	51	31	1	1	65	1.12
17005760--17005882	60	2.0	60	96	0	228	41	8	12	37	1.74
17006984--17007028	2	22.5	2	100	0	90	51	0	0	48	1.00
17007425--17007482	29	2.0	29	83	6	73	53	0	5	41	1.23
17009501--17009579	31	2.6	30	82	6	79	41	10	7	40	1.67
17010815--17010873	24	2.5	24	94	0	100	40	16	23	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17011570--17011619	22	2.3	22	86	3	66	30	10	30	30	1.90
17016311--17016382	24	2.9	27	75	18	68	38	2	2	55	1.29
17017289--17017347	29	2.0	30	90	3	93	50	13	5	30	1.63
17017803--17017849	21	2.2	21	88	0	76	53	12	6	27	1.63
17018998--17019058	25	2.3	25	83	8	77	24	9	32	32	1.88
17020764--17020865	51	2.0	51	92	0	168	35	19	25	19	1.95
17022840--17023078	52	4.6	52	86	2	318	25	12	23	38	1.90
17025653--17025836	52	3.5	52	86	1	253	36	22	13	27	1.91
17030723--17030772	21	2.6	18	77	20	55	36	22	16	26	1.94
17031397--17031461	26	2.5	26	87	0	85	23	21	21	33	1.97
17036160--17036212	26	1.9	27	85	11	72	24	9	0	66	1.21
17036717--17036924	109	1.9	109	89	0	326	31	13	14	40	1.85
17041215--17041314	29	3.3	29	76	8	94	62	1	3	34	1.17
17041759--17041788	12	2.5	12	100	0	60	50	0	0	50	1.00
17042161--17042190	4	7.5	4	92	0	51	26	0	0	73	0.84
17045071--17045127	17	3.5	17	76	9	64	49	0	0	50	1.00
17045099--17045189	20	4.7	20	67	13	64	42	0	2	54	1.12
17045070--17045210	57	2.4	58	87	5	205	46	0	2	50	1.18
17045372--17045426	16	3.4	16	77	7	58	30	25	3	40	1.73
17048900--17048991	30	3.0	30	75	10	87	39	1	5	54	1.31
17056430--17056490	29	2.2	28	88	5	88	65	3	6	24	1.32
17056424--17056498	29	2.5	30	79	14	84	64	2	8	25	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17056467--17056618	82	1.9	81	91	4	252	55	1	11	30	1.46
17056612--17056649	17	2.2	17	90	9	60	68	0	10	21	1.19
17060334--17060550	49	4.4	49	85	0	263	39	17	23	19	1.92
17060339--17060574	98	2.4	96	80	7	258	38	16	25	19	1.92
17060334--17060576	49	4.9	47	81	7	200	39	16	24	18	1.92
17060554--17060668	42	2.7	43	80	12	132	39	17	26	17	1.91
17060752--17061357	189	3.2	189	84	0	775	32	16	25	25	1.96
17060752--17061254	94	5.3	94	66	11	274	32	17	25	25	1.97
17063105--17063181	32	2.4	30	83	10	91	29	10	1	58	1.39
17063224--17063260	16	2.3	16	95	0	65	24	13	0	62	1.31
17077184--17077244	27	2.3	27	85	0	77	27	9	29	32	1.89
17077972--17078002	12	2.6	12	94	0	53	51	41	0	6	1.27
17085985--17086040	21	2.7	21	82	0	67	35	21	16	26	1.94
17088644--17088693	21	2.3	23	79	6	59	46	0	2	52	1.12
17092270--17092340	31	2.3	30	78	7	79	50	4	11	33	1.57
17100891--17100924	15	2.3	15	89	0	50	11	32	5	50	1.63
17101193--17101227	4	8.8	4	100	0	70	25	22	0	51	1.48
17104433--17104465	2	16.5	2	100	0	66	48	0	0	51	1.00
17104474--17104547	18	4.1	18	76	15	73	29	6	0	63	1.20
17104495--17104550	17	3.2	17	71	14	51	32	5	0	62	1.18
17104475--17104550	35	2.2	35	90	2	118	30	6	0	63	1.20
17119250--17119419	25	6.7	25	74	13	93	29	23	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17119292--17119419	25	5.1	25	79	3	132	29	23	17	28	1.97
17119280--17119419	50	2.8	50	85	1	172	28	23	18	29	1.98
17119254--17119422	75	2.2	76	81	8	184	30	24	17	28	1.97
17124153--17124197	18	2.5	18	92	0	72	42	20	13	24	1.87
17125274--17125325	27	1.9	27	88	0	77	46	21	7	25	1.77
17126634--17126682	25	2.0	25	84	11	66	61	2	2	34	1.19
17126647--17126684	16	2.3	17	81	4	51	71	0	2	26	1.00
17126832--17126907	9	8.7	9	73	11	52	30	2	1	65	1.14
17126832--17126914	8	9.8	8	70	14	51	28	2	1	67	1.11
17127399--17127432	15	2.2	16	89	5	52	32	2	0	64	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144