genome.fa.s7.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Length:  38743931

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  66  of  144  ( 17169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14286870--14286913	17	2.6	17	81	0	52	47	4	0	47	1.22
14287666--14287695	16	1.9	15	93	6	51	60	0	0	40	0.97
14288771--14289082	30	10.7	29	76	12	216	38	24	1	35	1.67
14288769--14289153	117	3.3	117	79	9	308	37	25	2	34	1.69
14288771--14289183	59	7.1	58	79	8	310	36	25	2	34	1.70
14288814--14289183	29	12.7	29	75	15	168	36	25	2	35	1.70
14293582--14293622	13	3.4	12	83	9	57	12	9	0	78	0.98
14295158--14295313	71	2.2	71	83	0	186	30	26	12	29	1.93
14295880--14296056	24	7.4	24	84	0	201	17	25	17	38	1.92
14302022--14302115	43	2.2	43	90	0	143	32	21	13	31	1.92
14302024--14302096	22	3.4	22	71	17	71	30	20	15	34	1.93
14302180--14302337	71	2.2	71	83	4	185	31	25	13	29	1.94
14302897--14303076	24	7.5	24	78	5	157	23	24	12	39	1.90
14302897--14303076	48	3.8	48	80	4	193	23	24	12	39	1.90
14302897--14303078	72	2.5	71	81	7	215	23	24	12	39	1.89
14310871--14310917	12	4.0	11	81	13	58	48	19	17	14	1.81
14310872--14310919	24	2.0	24	95	0	87	45	18	16	18	1.85
14322506--14322532	13	2.1	13	100	0	54	40	0	0	59	0.98
14322824--14322859	14	2.6	14	91	8	56	63	0	0	36	0.94
14324882--14325008	27	4.5	27	69	14	85	31	26	15	25	1.96
14324818--14325070	87	2.9	87	89	2	384	30	25	16	27	1.97
14338740--14338777	11	3.6	11	86	6	53	34	5	7	52	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14341431--14341520	43	2.1	43	87	0	126	30	13	11	45	1.78
14343289--14343329	21	1.9	22	90	5	66	68	12	7	12	1.39
14353872--14353912	16	2.7	16	85	14	52	29	2	0	68	1.03
14353835--14353972	56	2.4	61	82	15	159	25	4	6	63	1.37
14362872--14362909	17	2.2	17	90	9	60	10	13	13	63	1.53
14377612--14377654	3	14.3	3	100	0	86	65	0	34	0	0.93
14382298--14382349	13	4.0	13	75	9	52	75	0	23	1	0.91
14382744--14382781	17	2.2	17	90	9	60	15	10	10	63	1.52
14387532--14387718	93	2.0	93	95	2	340	35	8	34	21	1.84
14393804--14393927	48	2.6	48	92	1	194	24	8	13	53	1.68
14395192--14395442	62	4.0	62	92	0	394	27	19	15	37	1.92
14394977--14395782	402	2.0	401	88	2	1181	28	18	15	37	1.91
14395594--14395774	62	2.9	62	89	0	263	27	19	16	37	1.93
14395254--14395997	340	2.2	339	87	0	1067	28	18	14	38	1.90
14395718--14396212	215	2.3	215	84	3	656	30	17	14	37	1.89
14396151--14396336	62	3.0	62	92	0	318	26	18	16	38	1.92
14395378--14396552	554	2.1	554	87	2	1667	28	17	15	39	1.90
14396488--14396676	62	3.0	62	91	0	297	26	17	16	39	1.90
14395934--14396892	340	2.8	338	88	3	1374	28	17	14	39	1.89
14396612--14397109	216	2.3	216	86	4	689	31	17	13	37	1.88
14397045--14397171	62	2.0	62	93	0	218	29	18	17	34	1.94
14396210--14397449	278	4.5	277	71	12	1093	28	17	14	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14397323--14397510	62	3.0	61	88	3	270	27	17	16	38	1.91
14398527--14398589	32	2.0	32	90	0	99	41	15	9	33	1.80
14398635--14398733	39	2.5	39	96	0	180	53	15	5	26	1.62
14401803--14401926	50	2.4	50	84	5	151	36	12	15	36	1.84
14402136--14402168	17	1.9	17	88	11	50	66	6	0	27	1.15
14403552--14403596	18	2.4	18	85	10	56	11	22	4	62	1.46
14403642--14403694	21	2.5	20	76	8	52	11	22	0	66	1.24
14404586--14404657	27	2.6	28	82	8	94	15	9	4	70	1.28
14405842--14405983	50	2.8	51	76	10	148	36	12	14	36	1.84
14406193--14406225	17	1.9	17	88	11	50	66	6	0	27	1.15
14407557--14407614	11	5.1	11	76	13	55	3	27	0	68	1.05
14407557--14407677	22	5.2	24	70	18	71	5	24	0	69	1.10
14407581--14407634	29	1.9	27	82	14	65	3	29	0	66	1.09
14407575--14407658	11	7.7	11	71	10	57	4	23	0	71	1.05
14409895--14409936	22	2.0	21	86	13	59	28	11	2	57	1.47
14410301--14410328	11	2.5	11	100	0	56	25	0	53	21	1.46
14411828--14412012	62	3.0	62	88	0	264	28	18	15	37	1.92
14412164--14412352	62	3.0	62	87	0	261	28	17	15	38	1.91
14411611--14412563	340	2.8	339	86	2	1258	28	17	14	39	1.89
14412288--14412783	215	2.3	216	84	4	653	29	16	13	39	1.88
14412722--14412969	62	4.0	62	90	0	361	27	18	16	37	1.92
14413156--14413315	62	2.6	62	86	0	239	27	17	15	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14412504--14413310	402	2.0	401	86	2	1136	28	17	15	39	1.90
14413675--14413801	62	2.0	62	92	0	209	27	18	18	35	1.94
14413467--14414062	278	2.2	278	86	4	830	27	16	16	39	1.90
14413953--14414326	62	6.0	62	83	3	466	27	17	15	39	1.90
14414478--14414598	62	2.0	62	93	0	206	27	17	16	38	1.91
14414219--14414865	277	2.3	278	90	1	994	27	16	15	40	1.89
14414755--14415067	62	5.0	62	86	0	410	27	17	15	38	1.91
14413458--14416240	803	3.4	803	79	9	2857	28	16	15	39	1.89
14415219--14415407	62	3.0	62	88	0	270	27	16	16	38	1.91
14414879--14415622	340	2.2	340	86	2	1039	28	17	15	38	1.90
14415343--14415817	215	2.2	216	83	4	602	30	17	13	38	1.88
14415777--14415962	62	3.0	62	95	1	320	26	18	17	37	1.93
14415003--14416170	555	2.1	554	87	2	1662	28	17	15	39	1.90
14415559--14416517	340	2.8	339	85	4	1222	29	17	14	38	1.89
14416114--14416302	62	3.0	61	84	7	222	29	17	14	38	1.89
14415898--14417412	555	2.7	552	88	2	2202	28	17	14	39	1.89
14414879--14417072	895	2.5	892	90	2	3343	28	17	14	39	1.89
14416238--14416733	215	2.3	215	84	4	633	30	17	13	38	1.88
14416669--14416857	62	3.0	62	86	0	261	25	15	17	40	1.90
14416793--14417288	215	2.3	215	83	6	594	29	16	14	40	1.87
14417171--14417210	20	2.0	21	90	5	64	32	10	12	45	1.75
14417227--14417474	62	4.0	62	88	2	347	28	19	15	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14417410--14418118	216	3.3	216	80	3	768	29	17	14	38	1.89
14416669--14417888	617	2.0	613	83	4	1571	28	17	14	40	1.89
14416793--14418305	830	1.8	832	89	1	2419	28	17	14	39	1.89
14418057--14418366	62	5.0	60	88	2	395	27	20	15	37	1.92
14418064--14418366	124	2.4	124	88	1	437	27	20	15	37	1.92
14418518--14418706	62	3.0	61	85	3	243	26	18	15	39	1.91
14418178--14418921	340	2.2	340	87	1	1073	27	18	14	38	1.90
14418642--14419062	215	2.0	216	85	4	573	29	18	13	38	1.89
14419087--14419318	62	3.8	62	89	2	339	27	18	15	37	1.92
14418858--14419638	396	2.0	390	81	6	933	28	17	15	38	1.91
14419819--14419978	62	2.6	62	89	0	230	25	20	16	37	1.93
14419914--14420409	215	2.3	215	84	5	635	28	17	15	38	1.90
14420359--14420533	62	2.8	62	88	0	269	25	20	17	36	1.94
14419591--14421703	555	3.7	553	85	6	2240	28	18	14	38	1.90
14420469--14420964	215	2.3	216	81	4	590	30	16	13	38	1.88
14420903--14421150	62	4.0	62	89	2	365	27	19	15	37	1.92
14420910--14421150	124	1.9	124	92	1	403	26	19	15	37	1.92
14420359--14421769	619	2.3	617	95	0	2484	29	17	14	38	1.90
14421522--14421831	62	5.0	61	86	2	422	27	18	15	38	1.91
14421983--14422169	62	3.0	61	86	3	241	26	17	17	38	1.92
14421643--14422384	338	2.2	339	87	2	1071	28	16	15	38	1.90
14422107--14422600	215	2.3	214	85	4	665	29	17	14	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14421034--14423157	495	4.2	493	73	11	2140	28	17	14	38	1.90
14423034--14423343	62	5.0	61	85	2	404	27	18	16	38	1.92
14423495--14423681	62	3.0	61	86	3	241	26	17	17	38	1.92
14423155--14423833	338	2.0	340	85	3	931	28	16	15	40	1.89
14423830--14423885	20	2.8	20	75	0	67	46	16	3	33	1.64
14424688--14424972	62	4.6	62	89	0	426	26	18	16	39	1.91
14424688--14424998	125	2.5	124	87	2	426	27	18	16	37	1.92
14425150--14425338	62	3.0	62	86	1	254	26	18	15	38	1.91
14424809--14425553	340	2.2	340	87	1	1046	27	17	15	39	1.90
14425274--14425769	215	2.3	214	84	4	622	29	17	14	38	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144